AT4G34360

Methyltransferase-like protein 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008742
Physical Location & Seq
Forward (+)
16431916 .. 16434045
2130 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34360.1

Sequence Viewer

Length: 747 bp
ATGGAGAATCCAAATTCCGTTGGTCCTCCTTCTGCTTTAACCTACCTCGATCCTCACTACTGGGACGAGAGATTCTCTTCTGAAGAACACTATGAATGGTTCAAGGATTACTCTCATTTCCAGCATCTCATCATATCCAACATCAAACCCTCTTCTTCCGTATTGGAATTGGGATGTGGGAACTCTCAGTTGTGTGAAGAGTTGTATAAGGATGGGATTGTTGATATTACCTGCATTGATTTATCTTCCGTGGCGGTAGAGAAGATGCAGAGTCGGCTGCTACCAAAAGGGTACAAAGAAATAAAAGTGGTGCAAGCTGACATGCTAGACCTCCCATTTGACAGCGAGTCTTTTGATGTGGTTATTGAGAAAGGGACCATGGATGTACTGTTTGTGGATGCTGGTGATCCTTGGAATCCCCGTCCAGAAACTGTTAGCAAAGTCATGGCAACCCTTGATGGAGTTCACCGGGTTTTGAAACCAGATGGCATTTTCATTTCCATTACTTTTGGCCAGCCGCATTTCAGGCGTCCTCTGTTTAAGGATCCTAAGTTTACTTGGTCCATGGAGTACAACACTTTTGGCGATGGCTTCCATTATTTCTTCTATATCTTAAGAAAGGGAAAGAGATGTAATGATGAGAAAGAAGATGAGAAATGTAATGATCCATCAATATCCCTATATCAAGATGAACTTGAAGGCGAAGACTACCTCTTCCGAACACGCATTGATGATGGCGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_31

Protein Analysis

248

Amino Acids

28.71

Weight (kDa)

4.66

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_23 PF13489 42 - 182 6.2e-06 Methyltransferase domain
Ubie_methyltran PF01209 45 - 188 1.9e-07 ubiE/COQ5 methyltransferase family
Methyltransf_31 PF13847 49 - 171 2.7e-19 Methyltransferase domain
Methyltransf_25 PF13649 54 - 125 7.8e-14 Methyltransferase domain
Methyltransf_11 PF08241 55 - 166 6.5e-15 Methyltransferase domain
Methyltransf_12 PF08242 55 - 165 5e-09 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 239
AciI CCGC 2 cut(s) 254, 518
AclWI GGATC 5 cut(s) 44, 401, 539, 552, 659
AcoI YGGCCR 1 cut(s) 511
AcsI RAATTY 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 529
AfaI GTAC 3 cut(s) 293, 387, 572
AflII CTTAAG 1 cut(s) 613
AgsI TTSAA 3 cut(s) 103, 478, 698
AhdI GACNNNNNGTC 1 cut(s) 346
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
AlwI GGATC 5 cut(s) 44, 401, 539, 552, 659
AlwNI CAGNNNCTG 1 cut(s) 431
AoxI GGCC 1 cut(s) 511
ApeKI GCWGC 1 cut(s) 277
ApoI RAATTY 1 cut(s) 13
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AspS9I GGNCC 3 cut(s) 23, 375, 561
AsuC2I CCSGG 1 cut(s) 470
AsuHPI GGTGA 2 cut(s) 416, 458
AvaII GGWCC 3 cut(s) 23, 375, 561
BalI TGGCCA 1 cut(s) 513
BamHI GGATCC 1 cut(s) 544
BbsI GAAGAC 1 cut(s) 711
BbvI GCAGC 1 cut(s) 264
BccI CCATC 6 cut(s) 206, 452, 479, 581, 676, 728
BcnI CCSGG 1 cut(s) 470
BfaI CTAG 1 cut(s) 326
BfrI CTTAAG 1 cut(s) 613
BfuAI ACCTGC 1 cut(s) 239
BisI GCNGC 2 cut(s) 278, 518
BlsI GCNGC 2 cut(s) 279, 519
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 3 cut(s) 23, 375, 561
BmeRI GACNNNNNGTC 1 cut(s) 346
BmgT120I GGNCC 3 cut(s) 23, 375, 561
BmiI GGNNCC 2 cut(s) 376, 546
BmrFI CCNGG 1 cut(s) 470
BmrI ACTGGG 1 cut(s) 70
BmsI GCATC 3 cut(s) 133, 255, 388
BmuI ACTGGG 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 711
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BpuMI CCSGG 1 cut(s) 470
BsaHI GRCGYC 1 cut(s) 529
BsaJI CCNNGG 4 cut(s) 249, 378, 410, 564
Bse1I ACTGG 1 cut(s) 65
BseDI CCNNGG 4 cut(s) 249, 378, 410, 564
BseGI GGATG 4 cut(s) 179, 217, 388, 403
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 264
BshFI GGCC 1 cut(s) 513
BsiSI CCGG 1 cut(s) 469
BslFI GGGAC 2 cut(s) 77, 388
BsmFI GGGAC 2 cut(s) 77, 388
BsnI GGCC 1 cut(s) 513
Bsp143I GATC 4 cut(s) 49, 406, 544, 664
Bsp19I CCATGG 2 cut(s) 378, 564
BspACI CCGC 2 cut(s) 254, 518
BspANI GGCC 1 cut(s) 513
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 376, 546
BspMI ACCTGC 1 cut(s) 239
BspPI GGATC 5 cut(s) 44, 401, 539, 552, 659
BspTI CTTAAG 1 cut(s) 613
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 4 cut(s) 249, 378, 410, 564
BssMI GATC 4 cut(s) 49, 406, 544, 664
BssNI GRCGYC 1 cut(s) 529
BssT1I CCWWGG 3 cut(s) 378, 410, 564
Bst4CI ACNGT 2 cut(s) 390, 433
Bst6I CTCTTC 4 cut(s) 82, 157, 192, 719
BstACI GRCGYC 1 cut(s) 529
BstAFI CTTAAG 1 cut(s) 613
BstC8I GCNNGC 2 cut(s) 315, 515
BstDEI CTNAG 2 cut(s) 186, 549
BstDSI CCRYGG 3 cut(s) 249, 378, 564
BstF5I GGATG 4 cut(s) 179, 217, 388, 403
BstKTI GATC 4 cut(s) 52, 409, 547, 667
BstMBI GATC 4 cut(s) 49, 406, 544, 664
BstMWI GCNNNNNNNGC 2 cut(s) 274, 526
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 468
BstV1I GCAGC 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 711
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BsuRI GGCC 1 cut(s) 513
BtgI CCRYGG 3 cut(s) 249, 378, 564
BtgZI GCGATG 1 cut(s) 600
BtsCI GGATG 4 cut(s) 179, 217, 388, 403
BveI ACCTGC 1 cut(s) 239
Cac8I GCNNGC 2 cut(s) 315, 515
CaiI CAGNNNCTG 1 cut(s) 431
Cfr13I GGNCC 3 cut(s) 23, 375, 561
CseI GACGC 1 cut(s) 518
Csp6I GTAC 3 cut(s) 292, 386, 571
CviAII CATG 4 cut(s) 322, 379, 445, 565
CviJI RGCY 5 cut(s) 277, 317, 513, 517, 591
CviKI_1 RGCY 5 cut(s) 277, 317, 513, 517, 591
CviQI GTAC 3 cut(s) 292, 386, 571
DdeI CTNAG 2 cut(s) 186, 549
DpnI GATC 4 cut(s) 51, 408, 546, 666
DpnII GATC 4 cut(s) 49, 406, 544, 664
DriI GACNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 511
Eam1104I CTCTTC 4 cut(s) 82, 157, 192, 719
Eam1105I GACNNNNNGTC 1 cut(s) 346
EarI CTCTTC 4 cut(s) 82, 157, 192, 719
Eco130I CCWWGG 3 cut(s) 378, 410, 564
Eco47I GGWCC 3 cut(s) 23, 375, 561
Eco57I CTGAAG 1 cut(s) 102
EcoT14I CCWWGG 3 cut(s) 378, 410, 564
ErhI CCWWGG 3 cut(s) 378, 410, 564
FaeI CATG 4 cut(s) 325, 382, 448, 568
FaiI YATR 9 cut(s) 93, 134, 207, 323, 380, 446, 566, 609, 682
FalI AAGNNNNNCTT 2 cut(s) 678, 710
FaqI GGGAC 2 cut(s) 77, 388
FatI CATG 4 cut(s) 321, 378, 444, 564
Fnu4HI GCNGC 2 cut(s) 278, 518
FokI GGATG 4 cut(s) 186, 224, 395, 410
Fsp4HI GCNGC 2 cut(s) 278, 518
FspBI CTAG 1 cut(s) 326
GluI GCNGC 2 cut(s) 278, 518
HaeIII GGCC 1 cut(s) 513
HapII CCGG 1 cut(s) 469
HgaI GACGC 1 cut(s) 518
Hin1I GRCGYC 1 cut(s) 529
Hin1II CATG 4 cut(s) 325, 382, 448, 568
HinfI GANTC 5 cut(s) 7, 72, 271, 347, 415
HpaII CCGG 1 cut(s) 469
HphI GGTGA 2 cut(s) 416, 458
Hpy166II GTNNAC 2 cut(s) 466, 555
Hpy188I TCNGA 2 cut(s) 82, 719
Hpy188III TCNNGA 2 cut(s) 425, 686
Hpy8I GTNNAC 2 cut(s) 466, 555
HpyAV CCTTC 2 cut(s) 39, 692
HpyCH4III ACNGT 2 cut(s) 390, 433
HpyCH4V TGCA 3 cut(s) 234, 268, 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 526
HpyF3I CTNAG 2 cut(s) 186, 549
Hsp92I GRCGYC 1 cut(s) 529
Hsp92II CATG 4 cut(s) 325, 382, 448, 568
Kzo9I GATC 4 cut(s) 49, 406, 544, 664
LpnPI CCDG 9 cut(s) 46, 134, 244, 387, 438, 482, 495, 511, 527
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 3 cut(s) 133, 255, 388
MaeI CTAG 1 cut(s) 326
MalI GATC 4 cut(s) 51, 408, 546, 666
MboI GATC 4 cut(s) 49, 406, 544, 664
MflI RGATCY 1 cut(s) 544
MlsI TGGCCA 1 cut(s) 513
MluCI AATT 2 cut(s) 13, 167
MluNI TGGCCA 1 cut(s) 513
MlyI GAGTC 2 cut(s) 280, 356
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 8 cut(s) 36, 56, 63, 160, 341, 543, 722, 733
Mox20I TGGCCA 1 cut(s) 513
MscI TGGCCA 1 cut(s) 513
MseI TTAA 3 cut(s) 38, 540, 614
Msp20I TGGCCA 1 cut(s) 513
MspCI CTTAAG 1 cut(s) 613
MspI CCGG 1 cut(s) 469
MspR9I CCNGG 1 cut(s) 470
MwoI GCNNNNNNNGC 2 cut(s) 274, 526
NciI CCSGG 1 cut(s) 470
NcoI CCATGG 2 cut(s) 378, 564
NdeII GATC 4 cut(s) 49, 406, 544, 664
NlaIII CATG 4 cut(s) 325, 382, 448, 568
NlaIV GGNNCC 2 cut(s) 376, 546
NspI RCATGY 1 cut(s) 325
PfeI GAWTC 3 cut(s) 7, 72, 415
PkrI GCNGC 2 cut(s) 279, 519
PleI GAGTC 2 cut(s) 279, 355
PpsI GAGTC 2 cut(s) 279, 355
PspN4I GGNNCC 2 cut(s) 376, 546
PspPI GGNCC 3 cut(s) 23, 375, 561
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 3 cut(s) 293, 387, 572
RsaNI GTAC 3 cut(s) 292, 386, 571
SaqAI TTAA 3 cut(s) 38, 540, 614
SatI GCNGC 2 cut(s) 278, 518
Sau3AI GATC 4 cut(s) 49, 406, 544, 664
Sau96I GGNCC 3 cut(s) 23, 375, 561
SchI GAGTC 2 cut(s) 280, 356
ScrFI CCNGG 1 cut(s) 470
SetI ASST 6 cut(s) 44, 48, 233, 319, 333, 714
SfaNI GCATC 3 cut(s) 133, 255, 388
SinI GGWCC 3 cut(s) 23, 375, 561
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
Sse9I AATT 2 cut(s) 13, 167
SsiI CCGC 2 cut(s) 254, 518
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 3 cut(s) 378, 410, 564
TaaI ACNGT 2 cut(s) 390, 433
TaqI TCGA 1 cut(s) 48
TasI AATT 2 cut(s) 13, 167
TatI WGTACW 2 cut(s) 385, 570
TauI GCSGC 1 cut(s) 520
TfiI GAWTC 3 cut(s) 7, 72, 415
Tru1I TTAA 3 cut(s) 38, 540, 614
Tru9I TTAA 3 cut(s) 38, 540, 614
TseI GCWGC 1 cut(s) 277
TspDTI ATGAA 3 cut(s) 108, 484, 705
TspGWI ACGGA 3 cut(s) 7, 148, 238
Vha464I CTTAAG 1 cut(s) 613
VpaK11BI GGWCC 3 cut(s) 23, 375, 561
XapI RAATTY 1 cut(s) 13
XceI RCATGY 1 cut(s) 325
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.