Rmu_sc0002510.1_g000029

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002510.1
OG0008742
Physical Location & Seq
Reverse (-)
131908 .. 132630
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002510.1_g000029.1.cds

Sequence Viewer

Length: 426 bp
atgctagacctgccttttagcaacgagtgttttgatgttgttattgagaaaggaaccatggaggtattgttcgtggatagtggtgacccatggaatccccggcctgcgacggtaaccaaggtcatgaagatgcttgagggcattcatagagttttgaaaccagatgggatatacatttcaatttcttttggccagccacatttcaggcgccctttatttgaggctccacagtttacctggtctgtagagtggagtacctttggtgatggatttcactatttcttctatacattgaagaagggaagaagatcaacagataatagaagtgatgagaagttagagaggccatccataaatctttatcaagatgaattagagggcgaagacttcattttccgaaccaatttggatgagctcagctcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_31

Protein Analysis

141

Amino Acids

16.49

Weight (kDa)

4.94

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccB1I GGYRCC 1 cut(s) 207
AcoI YGGCCR 1 cut(s) 190
AcyI GRCGYC 1 cut(s) 208
AfaI GTAC 1 cut(s) 256
AgsI TTSAA 3 cut(s) 157, 180, 295
AjnI CCWGG 1 cut(s) 236
AloI GAACNNNNNNTCC 2 cut(s) 53, 85
AluBI AGCT 2 cut(s) 415, 420
AluI AGCT 2 cut(s) 415, 420
Alw21I GWGCWC 1 cut(s) 417
AoxI GGCC 3 cut(s) 101, 190, 344
AspLEI GCGC 1 cut(s) 210
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 95, 275
BalI TGGCCA 1 cut(s) 192
BanI GGYRCC 1 cut(s) 207
BanII GRGCYC 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 417
BccI CCATC 3 cut(s) 158, 260, 355
BciT130I CCWGG 1 cut(s) 238
BcnI CCSGG 1 cut(s) 100
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 211
BfuAI ACCTGC 1 cut(s) 18
BlpI GCTNAGC 1 cut(s) 416
Bme1390I CCNGG 2 cut(s) 100, 238
BmiI GGNNCC 3 cut(s) 55, 209, 225
BmrFI CCNGG 2 cut(s) 100, 238
BmsI GCATC 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 390
BplI GAGNNNNNCTC 1 cut(s) 404
Bpu1102I GCTNAGC 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 208
BsaJI CCNNGG 4 cut(s) 57, 89, 98, 117
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 4 cut(s) 57, 89, 98, 117
BseGI GGATG 2 cut(s) 347, 415
BshFI GGCC 3 cut(s) 103, 192, 346
BshNI GGYRCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 417
BsiSI CCGG 1 cut(s) 100
BsmI GAATGC 1 cut(s) 141
BsnI GGCC 3 cut(s) 103, 192, 346
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 1 cut(s) 308
Bsp1720I GCTNAGC 1 cut(s) 416
Bsp19I CCATGG 2 cut(s) 57, 89
BspANI GGCC 3 cut(s) 103, 192, 346
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 3 cut(s) 55, 209, 225
BspMI ACCTGC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 207
BssECI CCNNGG 4 cut(s) 57, 89, 98, 117
BssMI GATC 1 cut(s) 308
BssNI GRCGYC 1 cut(s) 208
BssT1I CCWWGG 3 cut(s) 57, 89, 117
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 2 cut(s) 112, 231
BstACI GRCGYC 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 105, 194
BstDEI CTNAG 2 cut(s) 416, 423
BstDSI CCRYGG 2 cut(s) 57, 89
BstEII GGTNACC 2 cut(s) 83, 112
BstF5I GGATG 2 cut(s) 347, 415
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 1 cut(s) 311
BstMBI GATC 1 cut(s) 308
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 238
BstPI GGTNACC 2 cut(s) 83, 112
BstSCI CCNGG 2 cut(s) 98, 236
BstSFI CTRYAG 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 390
BsuRI GGCC 3 cut(s) 103, 192, 346
BtgI CCRYGG 2 cut(s) 57, 89
BtsCI GGATG 2 cut(s) 347, 415
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 105, 194
CciI TCATGA 1 cut(s) 123
CfoI GCGC 1 cut(s) 210
CsiI ACCWGGT 1 cut(s) 236
Csp6I GTAC 1 cut(s) 255
CviAII CATG 3 cut(s) 58, 90, 124
CviJI RGCY 7 cut(s) 103, 192, 196, 224, 346, 415, 420
CviKI_1 RGCY 7 cut(s) 103, 192, 196, 224, 346, 415, 420
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 2 cut(s) 416, 423
DinI GGCGCC 1 cut(s) 209
DpnI GATC 1 cut(s) 310
DpnII GATC 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 3 cut(s) 57, 89, 117
Eco24I GRGCYC 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 415
Eco91I GGTNACC 2 cut(s) 83, 112
EcoICRI GAGCTC 1 cut(s) 415
EcoO65I GGTNACC 2 cut(s) 83, 112
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 3 cut(s) 57, 89, 117
EcoT38I GRGCYC 1 cut(s) 417
EgeI GGCGCC 1 cut(s) 209
EheI GGCGCC 1 cut(s) 209
ErhI CCWWGG 3 cut(s) 57, 89, 117
FaeI CATG 3 cut(s) 61, 93, 127
FaiI YATR 7 cut(s) 59, 91, 125, 147, 172, 288, 353
FatI CATG 3 cut(s) 57, 89, 123
FokI GGATG 2 cut(s) 334, 422
FriOI GRGCYC 1 cut(s) 417
FspBI CTAG 1 cut(s) 5
GlaI GCGC 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 3 cut(s) 103, 192, 346
HapII CCGG 1 cut(s) 100
HhaI GCGC 1 cut(s) 210
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 3 cut(s) 61, 93, 127
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 1 cut(s) 94
HpaII CCGG 1 cut(s) 100
HphI GGTGA 2 cut(s) 95, 275
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 1 cut(s) 398
Hpy188III TCNNGA 2 cut(s) 124, 365
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 112, 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 416, 423
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 3 cut(s) 61, 93, 127
HspAI GCGC 1 cut(s) 208
KasI GGCGCC 1 cut(s) 207
Kzo9I GATC 1 cut(s) 308
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 8 cut(s) 23, 113, 117, 174, 190, 206, 223, 250
LweI GCATC 1 cut(s) 120
MabI ACCWGGT 1 cut(s) 236
MaeI CTAG 1 cut(s) 5
MaeIII GTNAC 2 cut(s) 83, 112
MalI GATC 1 cut(s) 310
MboI GATC 1 cut(s) 308
MboII GAAGA 6 cut(s) 139, 274, 307, 315, 318, 395
MhlI GDGCHC 1 cut(s) 417
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 3 cut(s) 180, 371, 403
MluNI TGGCCA 1 cut(s) 192
Mly113I GGCGCC 1 cut(s) 208
MnlI CCTC 5 cut(s) 55, 130, 214, 336, 370
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 192
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 2 cut(s) 100, 238
Mva1269I GAATGC 1 cut(s) 141
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 10
NarI GGCGCC 1 cut(s) 208
NciI CCSGG 1 cut(s) 100
NcoI CCATGG 2 cut(s) 57, 89
NdeII GATC 1 cut(s) 308
NlaIII CATG 3 cut(s) 61, 93, 127
NlaIV GGNNCC 3 cut(s) 55, 209, 225
NmuCI GTSAC 1 cut(s) 83
PagI TCATGA 1 cut(s) 123
PctI GAATGC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 94
PluTI GGCGCC 1 cut(s) 211
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 236
PspEI GGTNACC 2 cut(s) 83, 112
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 3 cut(s) 55, 209, 225
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 128
SacI GAGCTC 1 cut(s) 417
Sau3AI GATC 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 100, 238
SduI GDGCHC 1 cut(s) 417
SetI ASST 7 cut(s) 12, 66, 123, 239, 260, 417, 422
SexAI ACCWGGT 1 cut(s) 236
SfaNI GCATC 1 cut(s) 120
SfcI CTRYAG 1 cut(s) 243
SfoI GGCGCC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 3 cut(s) 180, 371, 403
SspDI GGCGCC 1 cut(s) 207
SspMI CTAG 1 cut(s) 5
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 98, 236
StyI CCWWGG 3 cut(s) 57, 89, 117
TaaI ACNGT 2 cut(s) 112, 231
TasI AATT 3 cut(s) 180, 371, 403
TfiI GAWTC 1 cut(s) 94
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 4 cut(s) 134, 140, 379, 384
XcmI CCANNNNNNNNNTGG 1 cut(s) 234
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.