Rroxscaffold_7G00208040

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008742
Physical Location & Seq
Forward (+)
58044397 .. 58046422
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208040.1

Sequence Viewer

Length: 375 bp
ATGAATCCTGCTGCTGTAATCCCGGGAATCTGCCATCGTGATCCCGTGATTCCAGCTGCTATGATCCTAAGTATCGTGGTTCCAAGATTTGCTGCTGGAAAAATGGAAGAGGTATTGTTCGTGGATAGTGGTGACCCATGGAATCCCCGGCCTGCAGCGGTAACCAAGGTCATGAAGATGCTTGAGAGCATTCATAGGGTTTTGAAACCAGATGGGATAAACATTTCAATTTCTTTTGGCCAGGGAAGAAGATCACCAGATAATAAACGATCGAGTGATGAGAAGTTAGAGAGGCCATCCATAAATCTTTATCAAGATGAATTAGAGGGCGAAGACTTCATTTTCCGAACCAATTTGGATGAGCTCAGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_31

Protein Analysis

124

Amino Acids

13.8

Weight (kDa)

5.36

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 158
AclWI GGATC 2 cut(s) 35, 58
AcoI YGGCCR 1 cut(s) 238
AgsI TTSAA 2 cut(s) 205, 228
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 3 cut(s) 56, 364, 369
AluI AGCT 3 cut(s) 56, 364, 369
Alw21I GWGCWC 1 cut(s) 366
AlwI GGATC 2 cut(s) 35, 58
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 3 cut(s) 149, 238, 293
ApeKI GCWGC 4 cut(s) 11, 56, 92, 155
AsuC2I CCSGG 3 cut(s) 23, 24, 148
AsuHPI GGTGA 2 cut(s) 143, 246
AvaI CYCGRG 1 cut(s) 22
BalI TGGCCA 1 cut(s) 240
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 339
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 3 cut(s) 43, 79, 167
BccI CCATC 3 cut(s) 42, 206, 304
BciT130I CCWGG 1 cut(s) 242
BcnI CCSGG 3 cut(s) 23, 24, 148
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 4 cut(s) 12, 57, 93, 156
BlpI GCTNAGC 1 cut(s) 365
BlsI GCNGC 4 cut(s) 13, 58, 94, 157
Bme1390I CCNGG 4 cut(s) 23, 24, 148, 242
BmeT110I CYCGRG 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 4 cut(s) 23, 24, 148, 242
BmsI GCATC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 339
BplI GAGNNNNNCTC 1 cut(s) 353
Bpu1102I GCTNAGC 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 3 cut(s) 23, 24, 148
BsaJI CCNNGG 5 cut(s) 22, 137, 146, 165, 241
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 5 cut(s) 22, 137, 146, 165, 241
BseGI GGATG 2 cut(s) 296, 364
BseXI GCAGC 3 cut(s) 43, 79, 167
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 3 cut(s) 151, 240, 295
BsiEI CGRYCG 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 2 cut(s) 23, 148
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 3 cut(s) 151, 240, 295
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 4 cut(s) 40, 63, 251, 269
Bsp1720I GCTNAGC 1 cut(s) 365
Bsp19I CCATGG 1 cut(s) 137
BspACI CCGC 1 cut(s) 158
BspANI GGCC 3 cut(s) 151, 240, 295
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 81
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 2 cut(s) 35, 58
BssECI CCNNGG 5 cut(s) 22, 137, 146, 165, 241
BssMI GATC 4 cut(s) 40, 63, 251, 269
BssT1I CCWWGG 2 cut(s) 137, 165
Bst2UI CCWGG 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 68, 365, 372
BstDSI CCRYGG 1 cut(s) 137
BstEII GGTNACC 2 cut(s) 131, 160
BstF5I GGATG 2 cut(s) 296, 364
BstKTI GATC 4 cut(s) 43, 66, 254, 272
BstMBI GATC 4 cut(s) 40, 63, 251, 269
BstMCI CGRYCG 1 cut(s) 272
BstNI CCWGG 1 cut(s) 242
BstPI GGTNACC 2 cut(s) 131, 160
BstSCI CCNGG 4 cut(s) 21, 22, 146, 240
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 43, 79, 167
BstV2I GAAGAC 1 cut(s) 339
BsuRI GGCC 3 cut(s) 151, 240, 295
BtgI CCRYGG 1 cut(s) 137
BtsCI GGATG 2 cut(s) 296, 364
Cac8I GCNNGC 1 cut(s) 153
CciI TCATGA 1 cut(s) 171
Cfr9I CCCGGG 1 cut(s) 22
CviAII CATG 2 cut(s) 138, 172
CviJI RGCY 6 cut(s) 56, 151, 240, 295, 364, 369
CviKI_1 RGCY 6 cut(s) 56, 151, 240, 295, 364, 369
DdeI CTNAG 3 cut(s) 68, 365, 372
DpnI GATC 4 cut(s) 42, 65, 253, 271
DpnII GATC 4 cut(s) 40, 63, 251, 269
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 2 cut(s) 137, 165
Eco24I GRGCYC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 364
Eco88I CYCGRG 1 cut(s) 22
Eco91I GGTNACC 2 cut(s) 131, 160
EcoICRI GAGCTC 1 cut(s) 364
EcoO65I GGTNACC 2 cut(s) 131, 160
EcoRII CCWGG 1 cut(s) 240
EcoT14I CCWWGG 2 cut(s) 137, 165
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 2 cut(s) 137, 165
FaeI CATG 2 cut(s) 141, 175
FaiI YATR 5 cut(s) 62, 139, 173, 195, 302
FatI CATG 2 cut(s) 137, 171
Fnu4HI GCNGC 4 cut(s) 12, 57, 93, 156
FokI GGATG 2 cut(s) 283, 371
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 4 cut(s) 12, 57, 93, 156
GluI GCNGC 4 cut(s) 12, 57, 93, 156
HaeIII GGCC 3 cut(s) 151, 240, 295
HapII CCGG 2 cut(s) 23, 148
Hin1II CATG 2 cut(s) 141, 175
HinfI GANTC 4 cut(s) 4, 27, 49, 142
HpaII CCGG 2 cut(s) 23, 148
HphI GGTGA 2 cut(s) 143, 246
Hpy188I TCNGA 1 cut(s) 347
Hpy188III TCNNGA 3 cut(s) 38, 172, 314
HpyCH4V TGCA 1 cut(s) 155
HpyF3I CTNAG 3 cut(s) 68, 365, 372
Hsp92II CATG 2 cut(s) 141, 175
Kzo9I GATC 4 cut(s) 40, 63, 251, 269
Lsp1109I GCAGC 3 cut(s) 43, 79, 167
LweI GCATC 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 131, 160
MalI GATC 4 cut(s) 42, 65, 253, 271
MboI GATC 4 cut(s) 40, 63, 251, 269
MboII GAAGA 5 cut(s) 119, 187, 258, 261, 344
MhlI GDGCHC 1 cut(s) 366
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 3 cut(s) 228, 320, 352
MluNI TGGCCA 1 cut(s) 240
MnlI CCTC 3 cut(s) 103, 285, 319
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 56, 158
MspI CCGG 2 cut(s) 23, 148
MspR9I CCNGG 4 cut(s) 23, 24, 148, 242
Mva1269I GAATGC 1 cut(s) 189
MvaI CCWGG 1 cut(s) 242
NciI CCSGG 3 cut(s) 23, 24, 148
NcoI CCATGG 1 cut(s) 137
NdeII GATC 4 cut(s) 40, 63, 251, 269
NlaIII CATG 2 cut(s) 141, 175
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 131
PagI TCATGA 1 cut(s) 171
PctI GAATGC 1 cut(s) 189
PfeI GAWTC 4 cut(s) 4, 27, 49, 142
PkrI GCNGC 4 cut(s) 13, 58, 94, 157
Ple19I CGATCG 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 240
PspEI GGTNACC 2 cut(s) 131, 160
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 81
PstI CTGCAG 1 cut(s) 157
PvuI CGATCG 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 366
SatI GCNGC 4 cut(s) 12, 57, 93, 156
Sau3AI GATC 4 cut(s) 40, 63, 251, 269
ScrFI CCNGG 4 cut(s) 23, 24, 148, 242
SduI GDGCHC 1 cut(s) 366
SetI ASST 5 cut(s) 58, 114, 171, 366, 371
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 153
SmaI CCCGGG 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 3 cut(s) 228, 320, 352
SsiI CCGC 1 cut(s) 158
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 4 cut(s) 21, 22, 146, 240
StyI CCWWGG 2 cut(s) 137, 165
TaqI TCGA 1 cut(s) 272
TasI AATT 3 cut(s) 228, 320, 352
TfiI GAWTC 4 cut(s) 4, 27, 49, 142
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 4 cut(s) 11, 56, 92, 155
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 5 cut(s) 17, 182, 188, 328, 333
TspMI CCCGGG 1 cut(s) 22
XmaI CCCGGG 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.