Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008742

Physical Location & Seq

Genomic Coordinates Forward (+)

13763205 .. 13766482

Gene Structure 3278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G106400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGGTACAAGACAGGACCCGAACGGAACGCACAAAAATGGCGGTGGCCCATCCACTGCTCTAGCTTACCTCGACCCTAAATACTGGGATGAACGATTTTCTACTGAGGAGCATTACGAGTGGCTCAAGGACTACTCTCATTTCCGGCACCTCATTCAATCCCATATCACTCCCAATTCTTCTGTCTTGGAGCTGGGGTGTGGAAATTCACAGCTGTGTGAAGAGTTGTATAAAGATGGGGTTACTGAAATAACATGCATTGATCTGTCCGCTGTTGCAGTGGAGAACATGCAGAAGAAGTTACTGTCTAAAGGTTTTAAAGAAATAAAAGTTCTGGAAGCTGACATGCTAGACCTGCCTTTTAGCAACGAGTGTTTTGATGTTGTTATTGAGAAAGGAACCATGGAGGTACTGTTCGTTGATAGTGGTGATCCATGGCATCCACGGCCTGCAACCGTAACCAAGGTCATGAAGATGCTTGAGGGTGTTCATAGGGTTTTAAAACCAGATGGCATTTACATCTCAATTTCCTTTGGCCAGCCGCATTTCAGGCGCCCTTTGTTTGAGGCTCCACAATTTACCTGGTCTGTGGAATGGAGTACCTTTGGTGATGGATTTCACTATTTTTTCTATACATTGAAGAAGGGAAGAAGATCATTGGATGATAAAGGATCTAGTAAAGAGAAGTTAGAGATCCCATCTATTTGTCTTTTTCAAGATGAATTAGAGGGTGAGGATTATCTTTTTCGAACCAACATCGATGAGCTCAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_31

Protein Analysis

259

Amino Acids

29.62

Weight (kDa)

5.15

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34360
fragaria_vesca	FvH4_2g07850 FvH4_2g07850
malus_domestica	MD10G1083300.v1.1
prunus_persica	Prupe.8G106400_v2.0.a1 Prupe.8G106400_v2.0.a1
pyrus_communis	pycom10g06540
rosa_chinensis	RchiOBHm_Chr6g0262271
rosa_laevigata	RLG00000014442
rosa_multiflora	Rmu_co8498825.1_g000001 Rmu_sc0002510.1_g000029
rosa_roxburghii	Rroxscaffold_7G00207950 Rroxscaffold_7G00208040
rosa_rugosa	Rorug05G0596100 Rorug05G0596100
rosa_samantha	Rh6AG116100 Rh6AG117600 Rh6BG110400 Rh6CG107900 Rh6DG098300 Rh7CG214200
rosa_wichuraiana	Rw6G010100 Rw6G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	363
AccB1I	GGYRCC	2 cut(s)	147, 552
AciI	CCGC	3 cut(s)	42, 270, 542
AclWI	GGATC	3 cut(s)	425, 679, 688
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	553
AfaI	GTAC	3 cut(s)	7, 411, 601
AgsI	TTSAA	3 cut(s)	158, 640, 716
AjnI	CCWGG	1 cut(s)	581
AleI	CACNNNNGTG	1 cut(s)	214
AloI	GAACNNNNNNTCC	2 cut(s)	398, 430
AluBI	AGCT	5 cut(s)	65, 193, 214, 341, 766
AluI	AGCT	5 cut(s)	65, 193, 214, 341, 766
Alw21I	GWGCWC	1 cut(s)	768
AlwI	GGATC	3 cut(s)	425, 679, 688
AoxI	GGCC	3 cut(s)	46, 446, 535
ApoI	RAATTY	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	2 cut(s)	16, 47
AsuHPI	GGTGA	3 cut(s)	440, 620, 743
AsuII	TTCGAA	1 cut(s)	748
AvaII	GGWCC	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	537
BanI	GGYRCC	2 cut(s)	147, 552
BanII	GRGCYC	1 cut(s)	768
Bbv12I	GWGCWC	1 cut(s)	768
BccI	CCATC	5 cut(s)	58, 230, 503, 605, 706
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	583
BfaI	CTAG	3 cut(s)	62, 350, 675
BfoI	RGCGCY	1 cut(s)	556
BfuAI	ACCTGC	1 cut(s)	363
BisI	GCNGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	543
Bme1390I	CCNGG	1 cut(s)	583
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	16, 47
BmiI	GGNNCC	5 cut(s)	18, 149, 400, 554, 570
BmrFI	CCNGG	1 cut(s)	583
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	2 cut(s)	448, 465
BmuI	ACTGGG	1 cut(s)	94
Bpu14I	TTCGAA	1 cut(s)	748
BpuEI	CTTGAG	2 cut(s)	110, 500
Bsa29I	ATCGAT	1 cut(s)	759
BsaHI	GRCGYC	1 cut(s)	553
BsaJI	CCNNGG	4 cut(s)	402, 434, 443, 462
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 398, 428
Bse1I	ACTGG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	583
BseCI	ATCGAT	1 cut(s)	759
BseDI	CCNNGG	4 cut(s)	402, 434, 443, 462
BseGI	GGATG	4 cut(s)	50, 94, 439, 667
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	122
BseYI	CCCAGC	1 cut(s)	193
BshFI	GGCC	3 cut(s)	48, 448, 537
BshNI	GGYRCC	2 cut(s)	147, 552
BshVI	ATCGAT	1 cut(s)	759
BsiHKAI	GWGCWC	1 cut(s)	768
BsiSI	CCGG	1 cut(s)	145
BsnI	GGCC	3 cut(s)	48, 448, 537
Bsp119I	TTCGAA	1 cut(s)	748
Bsp1286I	GDGCHC	1 cut(s)	768
Bsp143I	GATC	5 cut(s)	262, 430, 653, 671, 693
Bsp19I	CCATGG	2 cut(s)	402, 434
BspACI	CCGC	3 cut(s)	42, 270, 542
BspANI	GGCC	3 cut(s)	48, 448, 537
BspCNI	CTCAG	1 cut(s)	97
BspDI	ATCGAT	1 cut(s)	759
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	5 cut(s)	18, 149, 400, 554, 570
BspMI	ACCTGC	1 cut(s)	363
BspPI	GGATC	3 cut(s)	425, 679, 688
BspT104I	TTCGAA	1 cut(s)	748
BspT107I	GGYRCC	2 cut(s)	147, 552
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	4 cut(s)	402, 434, 443, 462
BssMI	GATC	5 cut(s)	262, 430, 653, 671, 693
BssNI	GRCGYC	1 cut(s)	553
BssT1I	CCWWGG	3 cut(s)	402, 434, 462
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	3 cut(s)	306, 414, 457
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	553
BstBI	TTCGAA	1 cut(s)	748
BstC8I	GCNNGC	2 cut(s)	450, 539
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	3 cut(s)	402, 434, 443
BstF5I	GGATG	4 cut(s)	50, 94, 439, 667
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	5 cut(s)	265, 433, 656, 674, 696
BstMBI	GATC	5 cut(s)	262, 430, 653, 671, 693
BstMWI	GCNNNNNNNGC	3 cut(s)	355, 445, 550
BstNI	CCWGG	1 cut(s)	583
BstNSI	RCATGY	3 cut(s)	258, 292, 349
BstSCI	CCNGG	1 cut(s)	581
BstX2I	RGATCY	2 cut(s)	671, 693
BstYI	RGATCY	2 cut(s)	671, 693
Bsu15I	ATCGAT	1 cut(s)	759
BsuRI	GGCC	3 cut(s)	48, 448, 537
BsuTUI	ATCGAT	1 cut(s)	759
BtgI	CCRYGG	3 cut(s)	402, 434, 443
BtsCI	GGATG	4 cut(s)	50, 94, 439, 667
BtsI	GCAGTG	2 cut(s)	54, 285
BtsIMutI	CAGTG	2 cut(s)	54, 285
BveI	ACCTGC	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	450, 539
CciI	TCATGA	1 cut(s)	468
CfoI	GCGC	1 cut(s)	555
Cfr13I	GGNCC	2 cut(s)	16, 47
ClaI	ATCGAT	1 cut(s)	759
CsiI	ACCWGGT	1 cut(s)	581
Csp6I	GTAC	3 cut(s)	6, 410, 600
CviAII	CATG	6 cut(s)	255, 289, 346, 403, 435, 469
CviQI	GTAC	3 cut(s)	6, 410, 600
DdeI	CTNAG	1 cut(s)	105
DinI	GGCGCC	1 cut(s)	554
DpnI	GATC	5 cut(s)	264, 432, 655, 673, 695
DpnII	GATC	5 cut(s)	262, 430, 653, 671, 693
DraI	TTTAAA	2 cut(s)	319, 501
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	766
Eco130I	CCWWGG	3 cut(s)	402, 434, 462
Eco24I	GRGCYC	1 cut(s)	768
Eco47I	GGWCC	1 cut(s)	16
Eco53kI	GAGCTC	1 cut(s)	766
EcoICRI	GAGCTC	1 cut(s)	766
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	581
EcoT14I	CCWWGG	3 cut(s)	402, 434, 462
EcoT22I	ATGCAT	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	768
EgeI	GGCGCC	1 cut(s)	554
EheI	GGCGCC	1 cut(s)	554
ErhI	CCWWGG	3 cut(s)	402, 434, 462
FaeI	CATG	6 cut(s)	258, 292, 349, 406, 438, 472
FatI	CATG	6 cut(s)	254, 288, 345, 402, 434, 468
Fnu4HI	GCNGC	1 cut(s)	542
FokI	GGATG	4 cut(s)	37, 101, 426, 674
FriOI	GRGCYC	1 cut(s)	768
Fsp4HI	GCNGC	1 cut(s)	542
FspBI	CTAG	3 cut(s)	62, 350, 675
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	1 cut(s)	542
GsaI	CCCAGC	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	556
HaeIII	GGCC	3 cut(s)	48, 448, 537
HapII	CCGG	1 cut(s)	145
HhaI	GCGC	1 cut(s)	555
Hin1I	GRCGYC	1 cut(s)	553
Hin1II	CATG	6 cut(s)	258, 292, 349, 406, 438, 472
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	3 cut(s)	440, 620, 743
Hpy188III	TCNNGA	3 cut(s)	335, 469, 716
HpyAV	CCTTC	1 cut(s)	637
HpyCH4III	ACNGT	3 cut(s)	306, 414, 457
HpyCH4V	TGCA	4 cut(s)	258, 278, 292, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	355, 445, 550
HpyF3I	CTNAG	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	553
Hsp92II	CATG	6 cut(s)	258, 292, 349, 406, 438, 472
HspAI	GCGC	1 cut(s)	553
KasI	GGCGCC	1 cut(s)	552
Kzo9I	GATC	5 cut(s)	262, 430, 653, 671, 693
LmnI	GCTCC	3 cut(s)	109, 190, 574
LweI	GCATC	2 cut(s)	448, 465
MabI	ACCWGGT	1 cut(s)	581
MaeI	CTAG	3 cut(s)	62, 350, 675
MaeIII	GTNAC	3 cut(s)	241, 300, 457
MalI	GATC	5 cut(s)	264, 432, 655, 673, 695
MboI	GATC	5 cut(s)	262, 430, 653, 671, 693
MboII	GAAGA	7 cut(s)	171, 233, 307, 484, 652, 660, 663
MfeI	CAATTG	1 cut(s)	769
MflI	RGATCY	2 cut(s)	671, 693
MhlI	GDGCHC	1 cut(s)	768
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	6 cut(s)	175, 205, 525, 575, 722, 769
MluNI	TGGCCA	1 cut(s)	537
Mly113I	GGCGCC	1 cut(s)	553
MnlI	CCTC	8 cut(s)	80, 100, 161, 400, 475, 559, 721, 727
Mox20I	TGGCCA	1 cut(s)	537
Mph1103I	ATGCAT	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	2 cut(s)	318, 500
MslI	CAYNNNNRTG	3 cut(s)	36, 214, 473
Msp20I	TGGCCA	1 cut(s)	537
MspA1I	CMGCKG	2 cut(s)	214, 272
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	583
MunI	CAATTG	1 cut(s)	769
MvaI	CCWGG	1 cut(s)	583
MwoI	GCNNNNNNNGC	3 cut(s)	355, 445, 550
NarI	GGCGCC	1 cut(s)	553
NcoI	CCATGG	2 cut(s)	402, 434
NdeII	GATC	5 cut(s)	262, 430, 653, 671, 693
NlaIII	CATG	6 cut(s)	258, 292, 349, 406, 438, 472
NlaIV	GGNNCC	5 cut(s)	18, 149, 400, 554, 570
NsiI	ATGCAT	1 cut(s)	260
NspI	RCATGY	3 cut(s)	258, 292, 349
NspV	TTCGAA	1 cut(s)	748
OliI	CACNNNNGTG	1 cut(s)	214
PagI	TCATGA	1 cut(s)	468
PkrI	GCNGC	1 cut(s)	543
PluTI	GGCGCC	1 cut(s)	556
PpuMI	RGGWCCY	1 cut(s)	16
Psp124BI	GAGCTC	1 cut(s)	768
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	581
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	5 cut(s)	18, 149, 400, 554, 570
PspPI	GGNCC	2 cut(s)	16, 47
PspPPI	RGGWCCY	1 cut(s)	16
PsuI	RGATCY	2 cut(s)	671, 693
PvuII	CAGCTG	1 cut(s)	214
RsaI	GTAC	3 cut(s)	7, 411, 601
RsaNI	GTAC	3 cut(s)	6, 410, 600
RseI	CAYNNNNRTG	3 cut(s)	36, 214, 473
SacI	GAGCTC	1 cut(s)	768
SaqAI	TTAA	2 cut(s)	318, 500
SatI	GCNGC	1 cut(s)	542
Sau3AI	GATC	5 cut(s)	262, 430, 653, 671, 693
Sau96I	GGNCC	2 cut(s)	16, 47
ScrFI	CCNGG	1 cut(s)	583
SduI	GDGCHC	1 cut(s)	768
SexAI	ACCWGGT	1 cut(s)	581
SfaNI	GCATC	2 cut(s)	448, 465
SfoI	GGCGCC	1 cut(s)	554
SfuI	TTCGAA	1 cut(s)	748
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	3 cut(s)	36, 214, 473
SmlI	CTYRAG	2 cut(s)	125, 479
SmoI	CTYRAG	2 cut(s)	125, 479
Sse9I	AATT	6 cut(s)	175, 205, 525, 575, 722, 769
SsiI	CCGC	3 cut(s)	42, 270, 542
SspDI	GGCGCC	1 cut(s)	552
SspMI	CTAG	3 cut(s)	62, 350, 675
SstI	GAGCTC	1 cut(s)	768
StyD4I	CCNGG	1 cut(s)	581
StyI	CCWWGG	3 cut(s)	402, 434, 462
TaaI	ACNGT	3 cut(s)	306, 414, 457
TaqI	TCGA	3 cut(s)	72, 748, 759
TasI	AATT	6 cut(s)	175, 205, 525, 575, 722, 769
TauI	GCSGC	1 cut(s)	544
Tru1I	TTAA	2 cut(s)	318, 500
Tru9I	TTAA	2 cut(s)	318, 500
TscAI	CASTG	2 cut(s)	61, 285
TspDTI	ATGAA	4 cut(s)	105, 479, 485, 735
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	2 cut(s)	61, 285
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	3 cut(s)	258, 292, 349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	579
XspI	CTAG	3 cut(s)	62, 350, 675
Zsp2I	ATGCAT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.