Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008742

Physical Location & Seq

Genomic Coordinates Forward (+)

17599179 .. 17604810

Gene Structure 5632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGACCATGACACACTTGTTTTGGTTTTCTTTTATAGGAGCATTAATAATTGAAAACTGGAAAACAAAGCTTCATTCTGGTAGTAAATTCCAGCAGCTCAGCCCCCAGGTAAGAATGTATAGTGCAGATGCTAACTTTCTTTGTGACTTAGAATTGAGTCGGCATCCGGAAGTGTATGAGTGGCTCAGTGCGAAGATTAGGCCCAGCAAACTTCGAAGGACTGAAAATCCTAGGAAGTGTGATGTTGTGTCCCTCCAAGAAGCTCTTTTCCATGTTCACAGCAGTGAATTAGTGTGCAATTCTAGTAAAGGTTTGTATCGGTTCCAAGATTTGTTGTTGGAAAAAGGGAAGTCAAAAGAGGTATTGTTCGTGGATAGTGGTGACCCATGGAATCCCCGGCCTGCAACGGTAACCAAGGTCATGAAGATGCTTGAGGGCATTCATAGGCCACATTTCAGGCACCCTTTATCTGAGGTTCCACAGTTTACCTGGTCTGTAGAGTGGAGTACCTTTGGTGATGGATTTCACTATTTCTTCTATACATTGAAGAAGGGAAGAAGATCACCAGATAATAAACGATCGAGTGATGAGAAGTTAGAGAGGCCATCCATAAATCTTTATCAAGATGAATTAGAGGGCGAAGACTTCATTTTCCGAACCAATTTGGATGAGCTCAGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_31

Protein Analysis

227

Amino Acids

26.65

Weight (kDa)

7.77

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34360
fragaria_vesca	FvH4_2g07850 FvH4_2g07850
malus_domestica	MD10G1083300.v1.1
prunus_persica	Prupe.8G106400_v2.0.a1 Prupe.8G106400_v2.0.a1
pyrus_communis	pycom10g06540
rosa_chinensis	RchiOBHm_Chr6g0262271
rosa_laevigata	RLG00000014442
rosa_multiflora	Rmu_co8498825.1_g000001 Rmu_sc0002510.1_g000029
rosa_roxburghii	Rroxscaffold_7G00207950 Rroxscaffold_7G00208040
rosa_rugosa	Rorug05G0596100 Rorug05G0596100
rosa_samantha	Rh6AG116100 Rh6AG117600 Rh6BG110400 Rh6CG107900 Rh6DG098300 Rh7CG214200
rosa_wichuraiana	Rw6G010100 Rw6G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	459
AccIII	TCCGGA	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	1 cut(s)	508
AgsI	TTSAA	2 cut(s)	53, 547
AjnI	CCWGG	2 cut(s)	105, 488
AleI	CACNNNNGTG	1 cut(s)	282
AluBI	AGCT	5 cut(s)	70, 97, 263, 673, 678
AluI	AGCT	5 cut(s)	70, 97, 263, 673, 678
Alw21I	GWGCWC	1 cut(s)	675
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	4 cut(s)	200, 398, 446, 602
ApeKI	GCWGC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	86
AseI	ATTAAT	1 cut(s)	44
AspA2I	CCTAGG	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	201
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	3 cut(s)	392, 527, 555
AsuII	TTCGAA	1 cut(s)	214
AvrII	CCTAGG	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	675
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	675
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	512, 613
BciT130I	CCWGG	2 cut(s)	107, 490
BcnI	CCSGG	1 cut(s)	397
BfaI	CTAG	2 cut(s)	231, 303
BfmI	CTRYAG	1 cut(s)	495
BisI	GCNGC	1 cut(s)	95
BlnI	CCTAGG	1 cut(s)	230
BlpI	GCTNAGC	2 cut(s)	98, 674
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	3 cut(s)	107, 397, 490
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	3 cut(s)	323, 461, 477
BmrFI	CCNGG	3 cut(s)	107, 397, 490
BmsI	GCATC	3 cut(s)	118, 172, 417
BpiI	GAAGAC	1 cut(s)	648
BplI	GAGNNNNNCTC	1 cut(s)	662
Bpu1102I	GCTNAGC	2 cut(s)	98, 674
Bpu14I	TTCGAA	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	1 cut(s)	397
BsaJI	CCNNGG	5 cut(s)	105, 230, 386, 395, 414
BsaWI	WCCGGW	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	62
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	107, 490
BseDI	CCNNGG	5 cut(s)	105, 230, 386, 395, 414
BseGI	GGATG	3 cut(s)	163, 605, 673
BseMII	CTCAG	3 cut(s)	112, 199, 462
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	106
BseYI	CCCAGC	1 cut(s)	203
BsgI	GTGCAG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	581
BshFI	GGCC	4 cut(s)	202, 400, 448, 604
BshNI	GGYRCC	1 cut(s)	459
BsiEI	CGRYCG	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	675
BsiSI	CCGG	2 cut(s)	167, 397
BslFI	GGGAC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	438
BsnI	GGCC	4 cut(s)	202, 400, 448, 604
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	560, 578
Bsp1720I	GCTNAGC	2 cut(s)	98, 674
Bsp19I	CCATGG	1 cut(s)	386
BspANI	GGCC	4 cut(s)	202, 400, 448, 604
BspCNI	CTCAG	3 cut(s)	111, 198, 463
BspEI	TCCGGA	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	3 cut(s)	323, 461, 477
BspT104I	TTCGAA	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	5 cut(s)	105, 230, 386, 395, 414
BssMI	GATC	2 cut(s)	560, 578
BssT1I	CCWWGG	3 cut(s)	230, 386, 414
Bst2UI	CCWGG	2 cut(s)	107, 490
Bst4CI	ACNGT	2 cut(s)	409, 483
BstBI	TTCGAA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	6 cut(s)	98, 148, 185, 471, 674, 681
BstDSI	CCRYGG	1 cut(s)	386
BstEII	GGTNACC	2 cut(s)	380, 409
BstF5I	GGATG	3 cut(s)	163, 605, 673
BstKTI	GATC	2 cut(s)	563, 581
BstMBI	GATC	2 cut(s)	560, 578
BstMCI	CGRYCG	1 cut(s)	581
BstNI	CCWGG	2 cut(s)	107, 490
BstPI	GGTNACC	2 cut(s)	380, 409
BstSCI	CCNGG	3 cut(s)	105, 395, 488
BstSFI	CTRYAG	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	648
BsuRI	GGCC	4 cut(s)	202, 400, 448, 604
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	3 cut(s)	163, 605, 673
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	193, 289
Cac8I	GCNNGC	1 cut(s)	402
CciI	TCATGA	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	201
CsiI	ACCWGGT	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	507
CviAII	CATG	4 cut(s)	7, 272, 387, 421
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	6 cut(s)	98, 148, 185, 471, 674, 681
DpnI	GATC	2 cut(s)	562, 580
DpnII	GATC	2 cut(s)	560, 578
Ecl136II	GAGCTC	1 cut(s)	673
Eco130I	CCWWGG	3 cut(s)	230, 386, 414
Eco24I	GRGCYC	1 cut(s)	675
Eco53kI	GAGCTC	1 cut(s)	673
Eco91I	GGTNACC	2 cut(s)	380, 409
EcoICRI	GAGCTC	1 cut(s)	673
EcoO65I	GGTNACC	2 cut(s)	380, 409
EcoRII	CCWGG	2 cut(s)	105, 488
EcoT14I	CCWWGG	3 cut(s)	230, 386, 414
EcoT38I	GRGCYC	1 cut(s)	675
ErhI	CCWWGG	3 cut(s)	230, 386, 414
FaeI	CATG	4 cut(s)	10, 275, 390, 424
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	4 cut(s)	6, 271, 386, 420
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	3 cut(s)	150, 592, 680
FriOI	GRGCYC	1 cut(s)	675
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	2 cut(s)	231, 303
GluI	GCNGC	1 cut(s)	95
GsaI	CCCAGC	1 cut(s)	207
HaeIII	GGCC	4 cut(s)	202, 400, 448, 604
HapII	CCGG	2 cut(s)	167, 397
Hin1II	CATG	4 cut(s)	10, 275, 390, 424
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	157, 391
HpaII	CCGG	2 cut(s)	167, 397
HphI	GGTGA	3 cut(s)	392, 527, 555
Hpy166II	GTNNAC	2 cut(s)	277, 486
Hpy188I	TCNGA	2 cut(s)	472, 656
Hpy188III	TCNNGA	3 cut(s)	167, 421, 623
Hpy8I	GTNNAC	2 cut(s)	277, 486
HpyAV	CCTTC	2 cut(s)	210, 544
HpyCH4III	ACNGT	2 cut(s)	409, 483
HpyCH4V	TGCA	3 cut(s)	125, 297, 404
HpyF3I	CTNAG	6 cut(s)	98, 148, 185, 471, 674, 681
Hsp92II	CATG	4 cut(s)	10, 275, 390, 424
Kpn2I	TCCGGA	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	560, 578
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	3 cut(s)	118, 172, 417
MabI	ACCWGGT	1 cut(s)	488
MaeI	CTAG	2 cut(s)	231, 303
MaeIII	GTNAC	3 cut(s)	143, 380, 409
MalI	GATC	2 cut(s)	562, 580
MboI	GATC	2 cut(s)	560, 578
MboII	GAAGA	7 cut(s)	205, 436, 526, 559, 567, 570, 653
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	7 cut(s)	48, 86, 152, 287, 298, 629, 661
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	263, 352, 427, 466, 594, 628
MroI	TCCGGA	1 cut(s)	166
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	2 cut(s)	282, 425
MspI	CCGG	2 cut(s)	167, 397
MspR9I	CCNGG	3 cut(s)	107, 397, 490
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	2 cut(s)	107, 490
NciI	CCSGG	1 cut(s)	397
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	2 cut(s)	560, 578
NlaIII	CATG	4 cut(s)	10, 275, 390, 424
NlaIV	GGNNCC	3 cut(s)	323, 461, 477
NmuCI	GTSAC	2 cut(s)	143, 380
NspV	TTCGAA	1 cut(s)	214
OliI	CACNNNNGTG	1 cut(s)	282
PagI	TCATGA	1 cut(s)	420
PctI	GAATGC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	96
Ple19I	CGATCG	1 cut(s)	581
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
PshBI	ATTAAT	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	675
Psp6I	CCWGG	2 cut(s)	105, 488
PspEI	GGTNACC	2 cut(s)	380, 409
PspFI	CCCAGC	1 cut(s)	203
PspGI	CCWGG	2 cut(s)	105, 488
PspN4I	GGNNCC	3 cut(s)	323, 461, 477
PspPI	GGNCC	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	581
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
RseI	CAYNNNNRTG	2 cut(s)	282, 425
SacI	GAGCTC	1 cut(s)	675
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	2 cut(s)	560, 578
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	3 cut(s)	107, 397, 490
SduI	GDGCHC	1 cut(s)	675
SexAI	ACCWGGT	1 cut(s)	488
SfaNI	GCATC	3 cut(s)	118, 172, 417
SfcI	CTRYAG	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	214
SmiMI	CAYNNNNRTG	2 cut(s)	282, 425
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	7 cut(s)	48, 86, 152, 287, 298, 629, 661
SspMI	CTAG	2 cut(s)	231, 303
SstI	GAGCTC	1 cut(s)	675
StyD4I	CCNGG	3 cut(s)	105, 395, 488
StyI	CCWWGG	3 cut(s)	230, 386, 414
TaaI	ACNGT	2 cut(s)	409, 483
TaqI	TCGA	2 cut(s)	214, 581
TasI	AATT	7 cut(s)	48, 86, 152, 287, 298, 629, 661
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	2 cut(s)	193, 289
TseFI	GTSAC	2 cut(s)	143, 380
TseI	GCWGC	1 cut(s)	94
Tsp45I	GTSAC	2 cut(s)	143, 380
TspDTI	ATGAA	5 cut(s)	62, 431, 437, 637, 642
TspRI	CASTG	2 cut(s)	193, 289
VspI	ATTAAT	1 cut(s)	44
XapI	RAATTY	1 cut(s)	86
XcmI	CCANNNNNNNNNTGG	1 cut(s)	486
XmaJI	CCTAGG	1 cut(s)	230
XspI	CTAG	2 cut(s)	231, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.