Rh7CG214200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0008742
Physical Location & Seq
Forward (+)
19356000 .. 19374182
18183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG214200.1

Sequence Viewer

Length: 186 bp
ATGTCTGAGCATCAAGTAAACTGTGAAGTAGACTGGTTTTCACGCAGAGAGAACCTTCGCTTGGCCAATGAGGACCTTGATCACTATAGAAGAGCATTAATAATTGAAAACTGGAAAACAAAGCTCCATTCCGCCAGTAAATTCCAGCAGCTCAGCCCCCAGGCTCATAAACCTCATGATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

7.37

Weight (kDa)

6.96

Isoelectric Point (pI)

66.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AciI CCGC 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 1 cut(s) 107
AjnI CCWGG 1 cut(s) 159
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 2 cut(s) 124, 151
AluI AGCT 2 cut(s) 124, 151
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 140
AseI ATTAAT 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 73
AvaII GGWCC 1 cut(s) 73
BalI TGGCCA 1 cut(s) 65
BbvI GCAGC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 161
BclI TGATCA 1 cut(s) 79
BfmI CTRYAG 2 cut(s) 85, 182
BisI GCNGC 1 cut(s) 149
BlpI GCTNAGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 19
Bpu1102I GCTNAGC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 3 cut(s) 38, 116, 135
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 3 cut(s) 38, 116, 135
BseXI GCAGC 1 cut(s) 160
BshFI GGCC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 61
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 79, 178
Bsp1720I GCTNAGC 1 cut(s) 152
BspACI CCGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 175
BspQI GCTCTTC 1 cut(s) 85
BsrI ACTGG 3 cut(s) 38, 116, 135
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 79, 178
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 6, 152
BstKTI GATC 2 cut(s) 82, 181
BstMBI GATC 2 cut(s) 79, 178
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 2 cut(s) 85, 182
BstV1I GCAGC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 65
CciI TCATGA 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 73
CviAII CATG 1 cut(s) 176
CviJI RGCY 5 cut(s) 65, 124, 151, 156, 164
CviKI_1 RGCY 5 cut(s) 65, 124, 151, 156, 164
DdeI CTNAG 2 cut(s) 6, 152
DpnI GATC 2 cut(s) 81, 180
DpnII GATC 2 cut(s) 79, 178
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
EciI GGCGGA 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 179
FaiI YATR 4 cut(s) 87, 168, 177, 184
FatI CATG 1 cut(s) 175
FbaI TGATCA 1 cut(s) 79
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 149
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 1 cut(s) 179
Hpy166II GTNNAC 2 cut(s) 19, 31
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 2 cut(s) 19, 31
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 6, 152
Hsp92II CATG 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 2 cut(s) 79, 178
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 6 cut(s) 19, 97, 146, 148, 158, 173
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 19
MalI GATC 2 cut(s) 81, 180
MboI GATC 2 cut(s) 79, 178
MboII GAAGA 1 cut(s) 102
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 2 cut(s) 102, 140
MluNI TGGCCA 1 cut(s) 65
MnlI CCTC 2 cut(s) 64, 183
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MseI TTAA 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
NdeII GATC 2 cut(s) 79, 178
NlaIII CATG 1 cut(s) 179
PagI TCATGA 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 150
PpuMI RGGWCCY 1 cut(s) 73
PshBI ATTAAT 1 cut(s) 98
Psp5II RGGWCCY 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspPI GGNCC 1 cut(s) 73
PspPPI RGGWCCY 1 cut(s) 73
SapI GCTCTTC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 2 cut(s) 79, 178
Sau96I GGNCC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 161
SetI ASST 5 cut(s) 57, 78, 126, 153, 175
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 2 cut(s) 85, 182
SinI GGWCC 1 cut(s) 73
Sse9I AATT 2 cut(s) 102, 140
SsiI CCGC 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 23
TasI AATT 2 cut(s) 102, 140
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TseI GCWGC 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 73
VspI ATTAAT 1 cut(s) 98
XapI RAATTY 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.