Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008742

Physical Location & Seq

Genomic Coordinates Forward (+)

17721130 .. 17729287

Gene Structure 8158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG117600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCAGTAGTTGGAGTAGAGCGATATTCTGGAGCATTAATAATTGAAAACTGGAAAACAAAGCTTCATTCTGGTAGTAAATTCCAGCAGCTCAGCCCCCAGGAGGTATTGTTCGTGGATAGTGGTGACCCATGGAATCCCCGGCCTGCAACGGTAACCAAGGTCATGAAGATGCTTGAGGGCATTCATAGGGTTTTGAAACCAGATGGGATATACATTTCAATTTCTTTTGGCCAGCCACATTTCAGGCACCCTTTATCTGAGGTTCCACAGTTTACCTGGTCTGTAGAGTGGAGTACCTTTGGTGATGGATTTCACTATTTCTTCTATACATTGAAGAAGGGAAGAAGATCACCAGATAATAAACGATCGAGTGATGAGAAGTTAGAGAGGCCATCCATAAATCTTTATCAAGATGAATTAGAGGGCGAAGACTTCATTTTCCGAACCAATTTGGATGAGCTCAGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_31

Protein Analysis

157

Amino Acids

18.17

Weight (kDa)

6.2

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34360
fragaria_vesca	FvH4_2g07850 FvH4_2g07850
malus_domestica	MD10G1083300.v1.1
prunus_persica	Prupe.8G106400_v2.0.a1 Prupe.8G106400_v2.0.a1
pyrus_communis	pycom10g06540
rosa_chinensis	RchiOBHm_Chr6g0262271
rosa_laevigata	RLG00000014442
rosa_multiflora	Rmu_co8498825.1_g000001 Rmu_sc0002510.1_g000029
rosa_roxburghii	Rroxscaffold_7G00207950 Rroxscaffold_7G00208040
rosa_rugosa	Rorug05G0596100 Rorug05G0596100
rosa_samantha	Rh6AG116100 Rh6AG117600 Rh6BG110400 Rh6CG107900 Rh6DG098300 Rh7CG214200
rosa_wichuraiana	Rw6G010100 Rw6G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	80
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	47, 199, 222, 337
AjnI	CCWGG	2 cut(s)	99, 278
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	4 cut(s)	64, 91, 463, 468
AluI	AGCT	4 cut(s)	64, 91, 463, 468
Alw21I	GWGCWC	1 cut(s)	465
AoxI	GGCC	3 cut(s)	143, 232, 392
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	80
AseI	ATTAAT	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	3 cut(s)	137, 317, 345
BalI	TGGCCA	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	3 cut(s)	200, 302, 403
BciT130I	CCWGG	2 cut(s)	101, 280
BcnI	CCSGG	1 cut(s)	142
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	1 cut(s)	89
BlpI	GCTNAGC	2 cut(s)	92, 464
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	3 cut(s)	101, 142, 280
BmiI	GGNNCC	2 cut(s)	251, 267
BmrFI	CCNGG	3 cut(s)	101, 142, 280
BmsI	GCATC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	1 cut(s)	452
BpmI	CTGGAG	1 cut(s)	51
Bpu1102I	GCTNAGC	2 cut(s)	92, 464
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	142
BsaJI	CCNNGG	4 cut(s)	99, 131, 140, 159
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	56
BseBI	CCWGG	2 cut(s)	101, 280
BseDI	CCNNGG	4 cut(s)	99, 131, 140, 159
BseGI	GGATG	2 cut(s)	395, 463
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	106, 252
BseNI	ACTGG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	371
BshFI	GGCC	3 cut(s)	145, 234, 394
BshNI	GGYRCC	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	3 cut(s)	145, 234, 394
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	350, 368
Bsp1720I	GCTNAGC	2 cut(s)	92, 464
Bsp19I	CCATGG	1 cut(s)	131
BspANI	GGCC	3 cut(s)	145, 234, 394
BspCNI	CTCAG	2 cut(s)	105, 253
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	251, 267
BspT107I	GGYRCC	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	4 cut(s)	99, 131, 140, 159
BssMI	GATC	2 cut(s)	350, 368
BssT1I	CCWWGG	2 cut(s)	131, 159
Bst2UI	CCWGG	2 cut(s)	101, 280
Bst4CI	ACNGT	2 cut(s)	154, 273
BstC8I	GCNNGC	2 cut(s)	147, 236
BstDEI	CTNAG	4 cut(s)	92, 261, 464, 471
BstDSI	CCRYGG	1 cut(s)	131
BstEII	GGTNACC	2 cut(s)	125, 154
BstF5I	GGATG	2 cut(s)	395, 463
BstKTI	GATC	2 cut(s)	353, 371
BstMBI	GATC	2 cut(s)	350, 368
BstMCI	CGRYCG	1 cut(s)	371
BstNI	CCWGG	2 cut(s)	101, 280
BstPI	GGTNACC	2 cut(s)	125, 154
BstSCI	CCNGG	3 cut(s)	99, 140, 278
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	145, 234, 394
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	395, 463
Cac8I	GCNNGC	2 cut(s)	147, 236
CciI	TCATGA	1 cut(s)	165
CsiI	ACCWGGT	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	2 cut(s)	132, 166
CviJI	RGCY	9 cut(s)	64, 91, 96, 145, 234, 238, 394, 463, 468
CviKI_1	RGCY	9 cut(s)	64, 91, 96, 145, 234, 238, 394, 463, 468
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	4 cut(s)	92, 261, 464, 471
DpnI	GATC	2 cut(s)	352, 370
DpnII	GATC	2 cut(s)	350, 368
EaeI	YGGCCR	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	463
Eco130I	CCWWGG	2 cut(s)	131, 159
Eco24I	GRGCYC	1 cut(s)	465
Eco53kI	GAGCTC	1 cut(s)	463
Eco91I	GGTNACC	2 cut(s)	125, 154
EcoICRI	GAGCTC	1 cut(s)	463
EcoO65I	GGTNACC	2 cut(s)	125, 154
EcoRII	CCWGG	2 cut(s)	99, 278
EcoT14I	CCWWGG	2 cut(s)	131, 159
EcoT38I	GRGCYC	1 cut(s)	465
ErhI	CCWWGG	2 cut(s)	131, 159
FaeI	CATG	2 cut(s)	135, 169
FaiI	YATR	6 cut(s)	133, 167, 189, 214, 330, 401
FatI	CATG	2 cut(s)	131, 165
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	2 cut(s)	382, 470
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	1 cut(s)	89
GluI	GCNGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	145, 234, 394
HapII	CCGG	1 cut(s)	142
Hin1II	CATG	2 cut(s)	135, 169
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	3 cut(s)	137, 317, 345
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	2 cut(s)	262, 446
Hpy188III	TCNNGA	3 cut(s)	30, 166, 413
Hpy8I	GTNNAC	1 cut(s)	276
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	2 cut(s)	154, 273
HpyCH4V	TGCA	1 cut(s)	149
HpyF3I	CTNAG	4 cut(s)	92, 261, 464, 471
Hsp92II	CATG	2 cut(s)	135, 169
Kzo9I	GATC	2 cut(s)	350, 368
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	1 cut(s)	162
MabI	ACCWGGT	1 cut(s)	278
MaeIII	GTNAC	2 cut(s)	125, 154
MalI	GATC	2 cut(s)	352, 370
MboI	GATC	2 cut(s)	350, 368
MboII	GAAGA	6 cut(s)	181, 316, 349, 357, 360, 443
MhlI	GDGCHC	1 cut(s)	465
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	5 cut(s)	42, 80, 222, 419, 451
MluNI	TGGCCA	1 cut(s)	234
MnlI	CCTC	5 cut(s)	97, 172, 256, 384, 418
Mox20I	TGGCCA	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	234
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	170
Msp20I	TGGCCA	1 cut(s)	234
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	3 cut(s)	101, 142, 280
Mva1269I	GAATGC	1 cut(s)	183
MvaI	CCWGG	2 cut(s)	101, 280
NciI	CCSGG	1 cut(s)	142
NcoI	CCATGG	1 cut(s)	131
NdeII	GATC	2 cut(s)	350, 368
NlaIII	CATG	2 cut(s)	135, 169
NlaIV	GGNNCC	2 cut(s)	251, 267
NmuCI	GTSAC	1 cut(s)	125
PagI	TCATGA	1 cut(s)	165
PctI	GAATGC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	90
Ple19I	CGATCG	1 cut(s)	371
PshBI	ATTAAT	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	99, 278
PspEI	GGTNACC	2 cut(s)	125, 154
PspGI	CCWGG	2 cut(s)	99, 278
PspN4I	GGNNCC	2 cut(s)	251, 267
PvuI	CGATCG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	2 cut(s)	350, 368
ScrFI	CCNGG	3 cut(s)	101, 142, 280
SduI	GDGCHC	1 cut(s)	465
SetI	ASST	9 cut(s)	66, 93, 108, 165, 267, 281, 302, 465, 470
SexAI	ACCWGGT	1 cut(s)	278
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	5 cut(s)	42, 80, 222, 419, 451
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	3 cut(s)	99, 140, 278
StyI	CCWWGG	2 cut(s)	131, 159
TaaI	ACNGT	2 cut(s)	154, 273
TaqI	TCGA	1 cut(s)	371
TasI	AATT	5 cut(s)	42, 80, 222, 419, 451
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	5 cut(s)	56, 176, 182, 427, 432
VspI	ATTAAT	1 cut(s)	38
XapI	RAATTY	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.