Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009763

Physical Location & Seq

Genomic Coordinates Forward (+)

17028586 .. 17030558

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCAGTGAACGTTGATGCAGAGTACCTCAAAGAGATAGAGAAAACTCGTAGAGACCTTCGAGCTCTCATCTCTTCCAGAAACTGTGCTCCCATTATGCTCCGTCTTGCATGGCATGATGCAGGAACCTATGATGCCAAGAAGAAAACCGGAGGTGCCAATGGATCTATCAGATTCAAGGAAGAGCTAAACCGTCCACACAACAAAGGTTTGGAGAAGGCAGTCGCCTTCTGCGAGGAAGTAAAGGCTAAGCATCCCAGAGTCTCTTACGCAGACCTTTATCAGCTCGCTGGAGTTGTTGCAGTGGAGGTTACTGGCGGCCCTGCAATCCCATTTACACCAGGCCGTAAGGATGCTGATTCCGCGGACGATGGAGAACTTCCAAATCCAAATGAAGGTGCCTCACATTTAAGAACTCTCTTCTCTCGTATGGGTCTATTGGATAGAGACATTGTAGCTCTCTCTGGAGGTCACACTTTGGGACGTGCACATAAGGAGAGATCAGATTTTGAAGGTCCTTGGACACAGGACCCTCTCAAGTTTGATAACTCGTATTTCGTAGAGCTTCTAAAAGGGGAGACTCCGGGATTGCTACAACTTAAAACCGACAAGGCTCTACTTGATGATCCCAAGTTCCACCCTTTTGTTAAGCTGTATGCAAAGGACGAGGATATGTTCTTCAAAGCCTATGCAATTTCACACAAGAAACTCTCAGAACTAGGATTTAATCCGCCAAGAAGAATTCCTTCAGCAGTGACGCAGCAGACGCTTGGAATCGCTGTTGCTGCAGCTGTGGTGATCTTTACAATATGCTATGAAGCAAGCAGAAGAGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

279

Amino Acids

30.89

Weight (kDa)

8.8

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	17 - 221	1.1e-51	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35970 AT4G35970
fragaria_vesca	FvH4_1g11490
malus_domestica	MD02G1127800.v1.1 MD15G1243000.v1.1
prunus_persica	Prupe.7G171100_v2.0.a1 Prupe.7G171100_v2.0.a1
pyrus_communis	pycom02g09990 pycom15g21410
rosa_chinensis	RchiOBHm_Chr2g0099111
rosa_laevigata	RLG00000016849
rosa_multiflora	Rmu_sc0009113.1_g000007 Rmu_sc0012098.1_g000003 Rmu_sc0034643.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143430
rosa_rugosa	Rorug02G0076800
rosa_samantha	Rh2AG125900 Rh2BG129200 Rh2CG130200 Rh2DG130600
rosa_wichuraiana	Rw2G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	155, 398
AccII	CGCG	1 cut(s)	365
AciI	CCGC	4 cut(s)	318, 363, 365, 731
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	2 cut(s)	172, 620
AcsI	RAATTY	1 cut(s)	741
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	3 cut(s)	178, 512, 682
AjiI	CACGTC	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	7 cut(s)	65, 187, 286, 458, 565, 652, 791
AluI	AGCT	7 cut(s)	65, 187, 286, 458, 565, 652, 791
Alw21I	GWGCWC	3 cut(s)	67, 91, 490
Alw26I	GTCTC	4 cut(s)	48, 268, 441, 572
Alw44I	GTGCAC	1 cut(s)	486
AlwI	GGATC	2 cut(s)	172, 620
AlwNI	CAGNNNCTG	1 cut(s)	84
AoxI	GGCC	2 cut(s)	319, 343
ApaLI	GTGCAC	1 cut(s)	486
ApeKI	GCWGC	3 cut(s)	760, 785, 788
ApoI	RAATTY	1 cut(s)	741
Asp700I	GAANNNNTTC	1 cut(s)	745
AspS9I	GGNCC	3 cut(s)	320, 515, 529
AsuC2I	CCSGG	1 cut(s)	585
AsuHPI	GGTGA	1 cut(s)	808
AvaII	GGWCC	2 cut(s)	515, 529
BaeGI	GKGCMC	1 cut(s)	490
BanI	GGYRCC	2 cut(s)	155, 398
BanII	GRGCYC	1 cut(s)	67
Bbv12I	GWGCWC	3 cut(s)	67, 91, 490
BbvI	GCAGC	3 cut(s)	772, 772, 800
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	1 cut(s)	330
BciT130I	CCWGG	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	585
BcoDI	GTCTC	4 cut(s)	48, 268, 441, 572
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	786
BisI	GCNGC	4 cut(s)	319, 761, 786, 789
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	4 cut(s)	320, 762, 787, 790
Bme1390I	CCNGG	2 cut(s)	342, 585
Bme18I	GGWCC	2 cut(s)	515, 529
BmgBI	CACGTC	1 cut(s)	485
BmgT120I	GGNCC	3 cut(s)	320, 515, 529
BmiI	GGNNCC	4 cut(s)	127, 157, 400, 531
BmrFI	CCNGG	2 cut(s)	342, 585
BmsI	GCATC	5 cut(s)	7, 109, 124, 262, 343
BpmI	CTGGAG	2 cut(s)	312, 486
Bpu1102I	GCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	363, 518
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	363, 518
BseGI	GGATG	2 cut(s)	253, 358
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	726
BseNI	ACTGG	1 cut(s)	319
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	3 cut(s)	772, 772, 800
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	2 cut(s)	321, 345
BshNI	GGYRCC	2 cut(s)	155, 398
BsiHKAI	GWGCWC	3 cut(s)	67, 91, 490
BsiSI	CCGG	2 cut(s)	150, 584
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	4 cut(s)	48, 268, 441, 572
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	321, 345
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	3 cut(s)	67, 91, 490
Bsp143I	GATC	4 cut(s)	164, 500, 625, 798
Bsp1720I	GCTNAGC	1 cut(s)	249
BspACI	CCGC	4 cut(s)	318, 363, 365, 731
BspANI	GGCC	2 cut(s)	321, 345
BspCNI	CTCAG	1 cut(s)	725
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	4 cut(s)	127, 157, 400, 531
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	2 cut(s)	172, 620
BspQI	GCTCTTC	1 cut(s)	177
BspT107I	GGYRCC	2 cut(s)	155, 398
BspTNI	GGTCTC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	363, 518
BssMI	GATC	4 cut(s)	164, 500, 625, 798
BssT1I	CCWWGG	1 cut(s)	518
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	86, 194
Bst6I	CTCTTC	4 cut(s)	79, 177, 425, 823
BstC8I	GCNNGC	2 cut(s)	288, 823
BstDEI	CTNAG	2 cut(s)	249, 712
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	253, 358
BstFNI	CGCG	1 cut(s)	365
BstKTI	GATC	4 cut(s)	167, 503, 628, 801
BstMAI	GTCTC	4 cut(s)	48, 268, 441, 572
BstMBI	GATC	4 cut(s)	164, 500, 625, 798
BstMWI	GCNNNNNNNGC	4 cut(s)	362, 766, 785, 831
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	340, 583
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	1 cut(s)	490
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	3 cut(s)	772, 772, 800
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	321, 345
BtgI	CCRYGG	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	485
BtsCI	GGATG	2 cut(s)	253, 358
BtsI	GCAGTG	3 cut(s)	12, 309, 759
BtsIMutI	CAGTG	3 cut(s)	12, 309, 759
Cac8I	GCNNGC	2 cut(s)	288, 823
CaiI	CAGNNNCTG	1 cut(s)	84
Cfr13I	GGNCC	3 cut(s)	320, 515, 529
Cfr42I	CCGCGG	1 cut(s)	366
CseI	GACGC	2 cut(s)	766, 775
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	2 cut(s)	111, 116
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	249, 712
DpnI	GATC	4 cut(s)	166, 502, 627, 800
DpnII	GATC	4 cut(s)	164, 500, 625, 798
Eam1104I	CTCTTC	4 cut(s)	79, 177, 425, 823
EarI	CTCTTC	4 cut(s)	79, 177, 425, 823
EciI	GGCGGA	1 cut(s)	720
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	515, 529
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	732
EcoICRI	GAGCTC	1 cut(s)	65
EcoO109I	RGGNCCY	2 cut(s)	515, 529
EcoRI	GAATTC	1 cut(s)	741
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	518
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	518
FaeI	CATG	2 cut(s)	114, 119
FalI	AAGNNNNNCTT	2 cut(s)	730, 762
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	2 cut(s)	110, 115
Fnu4HI	GCNGC	4 cut(s)	319, 761, 786, 789
FokI	GGATG	2 cut(s)	240, 365
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	4 cut(s)	319, 761, 786, 789
FspBI	CTAG	1 cut(s)	719
GluI	GCNGC	4 cut(s)	319, 761, 786, 789
GsuI	CTGGAG	2 cut(s)	312, 486
HaeIII	GGCC	2 cut(s)	321, 345
HapII	CCGG	2 cut(s)	150, 584
HgaI	GACGC	2 cut(s)	766, 775
Hin1II	CATG	2 cut(s)	114, 119
HinfI	GANTC	5 cut(s)	174, 261, 359, 580, 774
HpaII	CCGG	2 cut(s)	150, 584
HphI	GGTGA	1 cut(s)	808
Hpy166II	GTNNAC	3 cut(s)	10, 197, 488
Hpy188I	TCNGA	3 cut(s)	173, 505, 715
Hpy188III	TCNNGA	2 cut(s)	78, 465
Hpy8I	GTNNAC	3 cut(s)	10, 197, 488
HpyAV	CCTTC	6 cut(s)	68, 211, 238, 389, 506, 756
HpyCH4III	ACNGT	2 cut(s)	86, 194
HpyCH4IV	ACGT	2 cut(s)	12, 484
HpyCH4V	TGCA	9 cut(s)	20, 110, 122, 302, 326, 488, 659, 692, 788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	362, 766, 785, 831
HpyF3I	CTNAG	2 cut(s)	249, 712
HpySE526I	ACGT	2 cut(s)	12, 484
Hsp92II	CATG	2 cut(s)	114, 119
KspI	CCGCGG	1 cut(s)	366
Kzo9I	GATC	4 cut(s)	164, 500, 625, 798
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	94, 105
Lsp1109I	GCAGC	3 cut(s)	772, 772, 800
LweI	GCATC	5 cut(s)	7, 109, 124, 262, 343
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	2 cut(s)	12, 484
MaeIII	GTNAC	3 cut(s)	310, 470, 754
MalI	GATC	4 cut(s)	166, 502, 627, 800
MboI	GATC	4 cut(s)	164, 500, 625, 798
MboII	GAAGA	7 cut(s)	66, 154, 194, 412, 670, 750, 840
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	3 cut(s)	67, 91, 490
MluCI	AATT	2 cut(s)	693, 741
MlyI	GAGTC	2 cut(s)	270, 574
MnlI	CCTC	9 cut(s)	38, 146, 229, 301, 412, 461, 543, 661, 824
MroXI	GAANNNNTTC	1 cut(s)	745
MseI	TTAA	4 cut(s)	410, 600, 648, 726
MspA1I	CMGCKG	2 cut(s)	365, 791
MspI	CCGG	2 cut(s)	150, 584
MspR9I	CCNGG	2 cut(s)	342, 585
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	4 cut(s)	362, 766, 785, 831
NciI	CCSGG	1 cut(s)	585
NdeII	GATC	4 cut(s)	164, 500, 625, 798
NlaIII	CATG	2 cut(s)	114, 119
NlaIV	GGNNCC	4 cut(s)	127, 157, 400, 531
NmuCI	GTSAC	2 cut(s)	470, 754
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	745
PfeI	GAWTC	3 cut(s)	174, 359, 774
PfoI	TCCNGGA	1 cut(s)	583
PkrI	GCNGC	4 cut(s)	320, 762, 787, 790
PleI	GAGTC	2 cut(s)	269, 574
PpsI	GAGTC	2 cut(s)	269, 574
PpuMI	RGGWCCY	2 cut(s)	515, 529
Psp124BI	GAGCTC	1 cut(s)	67
Psp1406I	AACGTT	1 cut(s)	12
Psp5II	RGGWCCY	2 cut(s)	515, 529
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	4 cut(s)	127, 157, 400, 531
PspPI	GGNCC	3 cut(s)	320, 515, 529
PspPPI	RGGWCCY	2 cut(s)	515, 529
PstI	CTGCAG	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SacI	GAGCTC	1 cut(s)	67
SacII	CCGCGG	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	4 cut(s)	410, 600, 648, 726
SatI	GCNGC	4 cut(s)	319, 761, 786, 789
Sau3AI	GATC	4 cut(s)	164, 500, 625, 798
Sau96I	GGNCC	3 cut(s)	320, 515, 529
SchI	GAGTC	2 cut(s)	270, 574
ScrFI	CCNGG	2 cut(s)	342, 585
SduI	GDGCHC	3 cut(s)	67, 91, 490
SfaNI	GCATC	5 cut(s)	7, 109, 124, 262, 343
SfcI	CTRYAG	1 cut(s)	786
Sfr303I	CCGCGG	1 cut(s)	366
SgrBI	CCGCGG	1 cut(s)	366
SinI	GGWCC	2 cut(s)	515, 529
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	2 cut(s)	693, 741
SsiI	CCGC	4 cut(s)	318, 363, 365, 731
SspMI	CTAG	1 cut(s)	719
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	340, 583
StyI	CCWWGG	1 cut(s)	518
TaaI	ACNGT	2 cut(s)	86, 194
TaiI	ACGT	2 cut(s)	15, 487
TaqI	TCGA	1 cut(s)	61
TasI	AATT	2 cut(s)	693, 741
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	3 cut(s)	174, 359, 774
Tru1I	TTAA	4 cut(s)	410, 600, 648, 726
Tru9I	TTAA	4 cut(s)	410, 600, 648, 726
TscAI	CASTG	3 cut(s)	12, 309, 759
TseFI	GTSAC	2 cut(s)	470, 754
TseI	GCWGC	3 cut(s)	760, 785, 788
Tsp45I	GTSAC	2 cut(s)	470, 754
TspDTI	ATGAA	2 cut(s)	408, 831
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	3 cut(s)	12, 309, 759
VneI	GTGCAC	1 cut(s)	486
VpaK11BI	GGWCC	2 cut(s)	515, 529
XapI	RAATTY	1 cut(s)	741
XmnI	GAANNNNTTC	1 cut(s)	745
XspI	CTAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.