Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009763

Physical Location & Seq

Genomic Coordinates Forward (+)

6269976 .. 6274382

Gene Structure 4407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCCTCATTACGGTCTGCAAAGGCAAGGCAACTCTACCTGCAGGAAATTGAGAAGGCTCGCCAAGACCTTCGTGCTCTTATCTACAGCAAGAACTGTGCTCCTATTATGCTTCGTTTAGCATGGCATGATGCTGGAACATATGATGCTAAAACAAAAACTGGAGGGCCTAATGGCTCAATCAGGAATGAGGAAGAGTTAAAACATAGTGCCAACAATGGACTGAAAATCGCGGTTGATTTATGCGAAGAAGTGAAGGCCAAGCACCCAAAAATTACATATGCCGACCTCTACCAGCTTGCTGGGGTTGTTGCAGTAGAGGTCACTGGAGGTCCACCTATTGATTTTATTTCGGGTAGAAAGGACTCAAAGCAATCACCACCAGAAGGCCGTCTTCCAGATGCCAAACTCGGTGCATCACATTTAAGGGATACTTTTTACCGCATGGGACTAGATGATCAGGACATTGTGGCTCTATCAGGAGGCCACACATTGGGAAGGGCACATCAGGAGAGATCAGGCTTTGATGGACCCTGGACAAAGGAGCCTGCGAAGTTTGACAACTCATACTTTGTGGAACTATTGAAAGGGAAGTCACAAGGACTGCTGAAACTTCCCACAGACAAGGCTTTAGTGGAGGATCCCGAGTTCCATCACTATGTCGAACTATATGCAAACGATAAGGATGCATTCTTCAGAGACTATGCAGTATCACACAAGAAACTATCCGAACTTGGCTTTAGTCCACCTTCTTCAGGTCAGAAGGTAGGACTTGCTCTTAGCATTGCTGCTATCCTAGTTTTGGCATTTGTGTGGGATCAGTTGACAGATATCAGCCCAGACCCTTATCTATTATGGAAACAATACAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

292

Amino Acids

32.31

Weight (kDa)

6.76

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	21 - 227	5.2e-50	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35970 AT4G35970
fragaria_vesca	FvH4_1g11490
malus_domestica	MD02G1127800.v1.1 MD15G1243000.v1.1
prunus_persica	Prupe.7G171100_v2.0.a1 Prupe.7G171100_v2.0.a1
pyrus_communis	pycom02g09990 pycom15g21410
rosa_chinensis	RchiOBHm_Chr2g0099111
rosa_laevigata	RLG00000016849
rosa_multiflora	Rmu_sc0009113.1_g000007 Rmu_sc0012098.1_g000003 Rmu_sc0034643.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143430
rosa_rugosa	Rorug02G0076800
rosa_samantha	Rh2AG125900 Rh2BG129200 Rh2CG130200 Rh2DG130600
rosa_wichuraiana	Rw2G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	48
AccB7I	CCANNNNNTGG	1 cut(s)	493
AccII	CGCG	1 cut(s)	233
AciI	CCGC	2 cut(s)	233, 442
AclWI	GGATC	3 cut(s)	635, 648, 825
AcuI	CTGAAG	2 cut(s)	679, 738
AfiI	CCNNNNNNNGG	5 cut(s)	12, 386, 493, 755, 802
AgsI	TTSAA	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	533
AloI	GAACNNNNNNTCC	2 cut(s)	632, 664
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw21I	GWGCWC	2 cut(s)	79, 103
Alw26I	GTCTC	1 cut(s)	693
AlwI	GGATC	3 cut(s)	635, 648, 825
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	5 cut(s)	3, 167, 258, 388, 484
ApeKI	GCWGC	1 cut(s)	788
AspS9I	GGNCC	3 cut(s)	167, 332, 530
AsuHPI	GGTGA	1 cut(s)	369
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	2 cut(s)	332, 530
BaeGI	GKGCMC	1 cut(s)	505
BamHI	GGATCC	1 cut(s)	640
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	2 cut(s)	79, 103
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	2 cut(s)	521, 660
BceAI	ACGGC	1 cut(s)	375
BcgI	CGANNNNNNTGC	4 cut(s)	653, 668, 687, 702
BciT130I	CCWGG	1 cut(s)	535
BciVI	GTATCC	1 cut(s)	424
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	693
BfaI	CTAG	2 cut(s)	452, 797
BfmI	CTRYAG	2 cut(s)	41, 85
BfuAI	ACCTGC	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	424
BisI	GCNGC	1 cut(s)	789
BlsI	GCNGC	1 cut(s)	790
Bme1390I	CCNGG	1 cut(s)	535
Bme18I	GGWCC	2 cut(s)	332, 530
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	3 cut(s)	167, 332, 530
BmiI	GGNNCC	3 cut(s)	532, 546, 642
BmrFI	CCNGG	1 cut(s)	535
BmsI	GCATC	5 cut(s)	121, 136, 391, 425, 676
BpiI	GAAGAC	1 cut(s)	386
BpmI	CTGGAG	2 cut(s)	183, 348
BsaJI	CCNNGG	1 cut(s)	533
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 386, 493, 755, 802
Bse1I	ACTGG	2 cut(s)	166, 331
Bse3DI	GCAATG	1 cut(s)	783
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	533
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	5 cut(s)	12, 386, 493, 755, 802
BseMI	GCAATG	1 cut(s)	783
BseNI	ACTGG	2 cut(s)	166, 331
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	775
BseYI	CCCAGC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	5 cut(s)	5, 169, 260, 390, 486
BsiHKAI	GWGCWC	2 cut(s)	79, 103
BsiHKCI	CYCGRG	1 cut(s)	644
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	5 cut(s)	12, 386, 493, 755, 802
BsmAI	GTCTC	1 cut(s)	693
BsmFI	GGGAC	1 cut(s)	462
BsmI	GAATGC	1 cut(s)	689
BsnI	GGCC	5 cut(s)	5, 169, 260, 390, 486
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	3 cut(s)	79, 103, 505
Bsp143I	GATC	4 cut(s)	457, 515, 640, 817
BspACI	CCGC	2 cut(s)	233, 442
BspANI	GGCC	5 cut(s)	5, 169, 260, 390, 486
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	3 cut(s)	532, 546, 642
BspMAI	CTGCAG	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	48
BspPI	GGATC	3 cut(s)	635, 648, 825
BsrDI	GCAATG	1 cut(s)	783
BsrI	ACTGG	2 cut(s)	166, 331
BssECI	CCNNGG	1 cut(s)	533
BssMI	GATC	4 cut(s)	457, 515, 640, 817
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	2 cut(s)	15, 98
Bst6I	CTCTTC	1 cut(s)	189
BstC8I	GCNNGC	3 cut(s)	61, 300, 549
BstDEI	CTNAG	1 cut(s)	779
BstENI	CCTNNNNNAGG	1 cut(s)	753
BstF5I	GGATG	1 cut(s)	691
BstFNI	CGCG	1 cut(s)	233
BstKTI	GATC	4 cut(s)	460, 518, 643, 820
BstMAI	GTCTC	1 cut(s)	693
BstMBI	GATC	4 cut(s)	457, 515, 640, 817
BstNI	CCWGG	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	533
BstSFI	CTRYAG	2 cut(s)	41, 85
BstSLI	GKGCMC	1 cut(s)	505
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	775
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	640
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	640
BsuI	GTATCC	1 cut(s)	424
BsuRI	GGCC	5 cut(s)	5, 169, 260, 390, 486
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	48
Cac8I	GCNNGC	3 cut(s)	61, 300, 549
Cfr13I	GGNCC	3 cut(s)	167, 332, 530
CviAII	CATG	3 cut(s)	123, 128, 445
DdeI	CTNAG	1 cut(s)	779
DpnI	GATC	4 cut(s)	459, 517, 642, 819
DpnII	GATC	4 cut(s)	457, 515, 640, 817
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	832
Eco47I	GGWCC	2 cut(s)	332, 530
Eco57I	CTGAAG	2 cut(s)	679, 738
Eco88I	CYCGRG	1 cut(s)	644
EcoNI	CCTNNNNNAGG	1 cut(s)	753
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	533
EcoRV	GATATC	1 cut(s)	832
EcoT22I	ATGCAT	1 cut(s)	691
FaeI	CATG	3 cut(s)	126, 131, 448
FalI	AAGNNNNNCTT	4 cut(s)	378, 410, 418, 450
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	3 cut(s)	122, 127, 444
FauNDI	CATATG	2 cut(s)	142, 280
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	789
FokI	GGATG	1 cut(s)	698
Fsp4HI	GCNGC	1 cut(s)	789
FspBI	CTAG	2 cut(s)	452, 797
GluI	GCNGC	1 cut(s)	789
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	2 cut(s)	183, 348
HaeIII	GGCC	5 cut(s)	5, 169, 260, 390, 486
Hin1II	CATG	3 cut(s)	126, 131, 448
HincII	GTYRAC	1 cut(s)	825
HindII	GTYRAC	1 cut(s)	825
HinfI	GANTC	1 cut(s)	365
HphI	GGTGA	1 cut(s)	369
Hpy166II	GTNNAC	3 cut(s)	335, 746, 825
Hpy188I	TCNGA	3 cut(s)	698, 730, 762
Hpy188III	TCNNGA	6 cut(s)	184, 398, 461, 480, 509, 644
Hpy8I	GTNNAC	3 cut(s)	335, 746, 825
HpyAV	CCTTC	7 cut(s)	49, 80, 250, 380, 492, 757, 759
HpyCH4III	ACNGT	2 cut(s)	15, 98
HpyCH4V	TGCA	7 cut(s)	20, 43, 314, 416, 674, 689, 707
HpyF3I	CTNAG	1 cut(s)	779
Hsp92II	CATG	3 cut(s)	126, 131, 448
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	457, 515, 640, 817
LmnI	GCTCC	2 cut(s)	106, 544
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	5 cut(s)	121, 136, 391, 425, 676
MaeI	CTAG	2 cut(s)	452, 797
MaeIII	GTNAC	2 cut(s)	322, 594
MalI	GATC	4 cut(s)	459, 517, 642, 819
MboI	GATC	4 cut(s)	457, 515, 640, 817
MboII	GAAGA	5 cut(s)	206, 260, 386, 685, 744
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	3 cut(s)	79, 103, 505
MluCI	AATT	3 cut(s)	48, 273, 871
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	8 cut(s)	16, 158, 184, 299, 313, 323, 476, 631
Mph1103I	ATGCAT	1 cut(s)	691
MseI	TTAA	2 cut(s)	200, 425
MslI	CAYNNNNRTG	2 cut(s)	657, 811
MspR9I	CCNGG	1 cut(s)	535
Mva1269I	GAATGC	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	535
MvnI	CGCG	1 cut(s)	233
NdeI	CATATG	2 cut(s)	142, 280
NdeII	GATC	4 cut(s)	457, 515, 640, 817
NlaIII	CATG	3 cut(s)	126, 131, 448
NlaIV	GGNNCC	3 cut(s)	532, 546, 642
NmuCI	GTSAC	2 cut(s)	322, 594
NsiI	ATGCAT	1 cut(s)	691
PctI	GAATGC	1 cut(s)	689
PflMI	CCANNNNNTGG	1 cut(s)	493
PkrI	GCNGC	1 cut(s)	790
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	3 cut(s)	532, 546, 642
PspPI	GGNCC	3 cut(s)	167, 332, 530
PstI	CTGCAG	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	640
RseI	CAYNNNNRTG	2 cut(s)	657, 811
SaqAI	TTAA	2 cut(s)	200, 425
SatI	GCNGC	1 cut(s)	789
Sau3AI	GATC	4 cut(s)	457, 515, 640, 817
Sau96I	GGNCC	3 cut(s)	167, 332, 530
SbfI	CCTGCAGG	1 cut(s)	45
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	535
SdaI	CCTGCAGG	1 cut(s)	45
SduI	GDGCHC	3 cut(s)	79, 103, 505
SfaNI	GCATC	5 cut(s)	121, 136, 391, 425, 676
SfcI	CTRYAG	2 cut(s)	41, 85
SinI	GGWCC	2 cut(s)	332, 530
SmiMI	CAYNNNNRTG	2 cut(s)	657, 811
Sse8387I	CCTGCAGG	1 cut(s)	45
Sse9I	AATT	3 cut(s)	48, 273, 871
SsiI	CCGC	2 cut(s)	233, 442
SspMI	CTAG	2 cut(s)	452, 797
StyD4I	CCNGG	1 cut(s)	533
TaaI	ACNGT	2 cut(s)	15, 98
TaqI	TCGA	1 cut(s)	663
TasI	AATT	3 cut(s)	48, 273, 871
Tru1I	TTAA	2 cut(s)	200, 425
Tru9I	TTAA	2 cut(s)	200, 425
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	2 cut(s)	322, 594
TseI	GCWGC	1 cut(s)	788
Tsp45I	GTSAC	2 cut(s)	322, 594
TspRI	CASTG	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	493
VpaK11BI	GGWCC	2 cut(s)	332, 530
XagI	CCTNNNNNAGG	1 cut(s)	753
XspI	CTAG	2 cut(s)	452, 797
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.