Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009763

Physical Location & Seq

Genomic Coordinates Forward (+)

6920617 .. 6922453

Gene Structure 1837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09990.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGCTTCCTTGCCCTCTCAAAACAGCGAACCAATTCTTTCTTGTTTACTTGGGAAACACTCTTGTTATCATTTCCCTTTATTCTGATTCTTCTTCTAAGCCCCTATATACATACACGGCAGCAAAAACTTTGTCATTTAGAATTGCAAATTCAGTATTCCTTTTACGTTTACACGCTCTCATGGCTGCGCCAATTGTAAACAAAGAGTACCTCCAGGAAATTGAGAAGGCTCGCCGAGACCTTCGTGCTCTTATCTACGGCAAGAACTGCGCTCCTATTATGCTTCGCATAGCGTGGCATGATGCTGGAACGTACGACGCTAGAACAAGGAATGGAATACCTGGAGGGCCTAACGGCTCTATCAGGAACAAGGAAGAGTTAAACCACAGTGCAAATAAGGGATTGGAAACTGCAGTTCAGTTATGTGAAGAAGTGAAGGCCAAACACCCTAAAATCACATATGCTGACCTCAACCAGCTTGCAGGGGTTGTTGCTGTAGAGATCACCGGAGGTCCATCCATTAACTTTGTTCCAGGTAGAAAGGACTCTAATCAATCTCCACCTGAAGGCCGCCTTCCAGATGCCAAACTTGGTGCATCACATTTAAGAGAAGTTTTCTACCGCATGGGCCTGTCCGACAAAGACATTGTGGTATTATCGGGAGGCCATACATTGGGAAAGGCAAATAAGAGATCTGGCTTTGAAGGCCCCTGGACAAAGGAGCCTTGGAAATTCGACAACTCATACTTCGTGGAACTACTGAAAGGGAAAACGGAGGGACTCCTGCAACTTCCGACGGACAGGGTGTTGGTGGAGGATCCAGTGTTCCGTCGCTATGTTGAGCTATATGCTAAGGACAACGATGCATTCTTCAGGGATTATGCAGTATCACACAAGAAACTATCAGAATTAGGCTTCACTCAACCTTCTTCGGCTCCGAAAGTCCTAGTTACTCTTACAATTGCTGCAATAATCGCTGCATTGGTGTACGATAAATGCAAAAGTCTCGTCCAAGACATGAAGACTCTCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

345

Amino Acids

38.17

Weight (kDa)

9.27

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35970 AT4G35970
fragaria_vesca	FvH4_1g11490
malus_domestica	MD02G1127800.v1.1 MD15G1243000.v1.1
prunus_persica	Prupe.7G171100_v2.0.a1 Prupe.7G171100_v2.0.a1
pyrus_communis	pycom02g09990 pycom15g21410
rosa_chinensis	RchiOBHm_Chr2g0099111
rosa_laevigata	RLG00000016849
rosa_multiflora	Rmu_sc0009113.1_g000007 Rmu_sc0012098.1_g000003 Rmu_sc0034643.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143430
rosa_rugosa	Rorug02G0076800
rosa_samantha	Rh2AG125900 Rh2BG129200 Rh2CG130200 Rh2DG130600
rosa_wichuraiana	Rw2G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	673
AciI	CCGC	2 cut(s)	571, 622
AclWI	GGATC	2 cut(s)	812, 825
AcsI	RAATTY	2 cut(s)	148, 731
AcuI	CTGAAG	2 cut(s)	585, 856
AfaI	GTAC	3 cut(s)	209, 314, 989
AfiI	CCNNNNNNNGG	2 cut(s)	566, 673
AgsI	TTSAA	1 cut(s)	704
AjnI	CCWGG	4 cut(s)	213, 340, 532, 710
AloI	GAACNNNNNNTCC	2 cut(s)	809, 841
AluBI	AGCT	2 cut(s)	478, 844
AluI	AGCT	2 cut(s)	478, 844
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	2 cut(s)	231, 1010
AlwI	GGATC	2 cut(s)	812, 825
AoxI	GGCC	6 cut(s)	347, 438, 568, 628, 664, 706
ApeKI	GCWGC	4 cut(s)	119, 185, 965, 977
ApoI	RAATTY	2 cut(s)	148, 731
ArsI	GACNNNNNNTTYG	4 cut(s)	116, 148, 993, 1025
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	190, 272
AspS9I	GGNCC	4 cut(s)	347, 512, 628, 707
AsuHPI	GGTGA	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	512
BamHI	GGATCC	1 cut(s)	817
BbsI	GAAGAC	1 cut(s)	1028
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	4 cut(s)	131, 172, 952, 964
BccI	CCATC	1 cut(s)	523
BceAI	ACGGC	3 cut(s)	132, 274, 370
BcgI	CGANNNNNNTGC	2 cut(s)	988, 1022
BciT130I	CCWGG	4 cut(s)	215, 342, 534, 712
BcoDI	GTCTC	2 cut(s)	231, 1010
BfaI	CTAG	2 cut(s)	321, 947
BfmI	CTRYAG	2 cut(s)	411, 495
BglII	AGATCT	1 cut(s)	692
BisI	GCNGC	5 cut(s)	120, 186, 571, 966, 978
BlsI	GCNGC	5 cut(s)	121, 187, 572, 967, 979
Bme1390I	CCNGG	4 cut(s)	215, 342, 534, 712
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	4 cut(s)	347, 512, 628, 707
BmiI	GGNNCC	4 cut(s)	709, 723, 819, 936
BmrFI	CCNGG	4 cut(s)	215, 342, 534, 712
BmsI	GCATC	4 cut(s)	292, 571, 605, 853
BpiI	GAAGAC	1 cut(s)	1028
BpmI	CTGGAG	2 cut(s)	197, 363
Bpu10I	CCTNAGC	1 cut(s)	852
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	710, 725
BsaWI	WCCGGW	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 673
Bse1I	ACTGG	1 cut(s)	821
BseBI	CCWGG	4 cut(s)	215, 342, 534, 712
BseDI	CCNNGG	2 cut(s)	710, 725
BseGI	GGATG	1 cut(s)	515
BseLI	CCNNNNNNNGG	2 cut(s)	566, 673
BseNI	ACTGG	1 cut(s)	821
BseXI	GCAGC	4 cut(s)	131, 172, 952, 964
BshFI	GGCC	6 cut(s)	349, 440, 570, 630, 666, 708
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	507
BsiWI	CGTACG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	792
BslI	CCNNNNNNNGG	2 cut(s)	566, 673
BsmAI	GTCTC	2 cut(s)	231, 1010
BsmFI	GGGAC	1 cut(s)	792
BsmI	GAATGC	1 cut(s)	866
BsnI	GGCC	6 cut(s)	349, 440, 570, 630, 666, 708
Bso31I	GGTCTC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	501, 692, 817
BspACI	CCGC	2 cut(s)	571, 622
BspANI	GGCC	6 cut(s)	349, 440, 570, 630, 666, 708
BspLI	GGNNCC	4 cut(s)	709, 723, 819, 936
BspMAI	CTGCAG	1 cut(s)	415
BspPI	GGATC	2 cut(s)	812, 825
BspTNI	GGTCTC	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	821
BssECI	CCNNGG	2 cut(s)	710, 725
BssMI	GATC	3 cut(s)	501, 692, 817
BssT1I	CCWWGG	1 cut(s)	725
Bst2UI	CCWGG	4 cut(s)	215, 342, 534, 712
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	232, 480
BstDEI	CTNAG	2 cut(s)	96, 852
BstF5I	GGATG	1 cut(s)	515
BstHHI	GCGC	2 cut(s)	190, 272
BstKTI	GATC	3 cut(s)	504, 695, 820
BstMAI	GTCTC	2 cut(s)	231, 1010
BstMBI	GATC	3 cut(s)	501, 692, 817
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 267, 705, 974
BstNI	CCWGG	4 cut(s)	215, 342, 534, 712
BstSCI	CCNGG	4 cut(s)	213, 340, 532, 710
BstSFI	CTRYAG	2 cut(s)	411, 495
BstV1I	GCAGC	4 cut(s)	131, 172, 952, 964
BstV2I	GAAGAC	1 cut(s)	1028
BstX2I	RGATCY	2 cut(s)	692, 817
BstYI	RGATCY	2 cut(s)	692, 817
BsuRI	GGCC	6 cut(s)	349, 440, 570, 630, 666, 708
BtsCI	GGATG	1 cut(s)	515
BtsIMutI	CAGTG	2 cut(s)	394, 828
Cac8I	GCNNGC	2 cut(s)	232, 480
CfoI	GCGC	2 cut(s)	190, 272
Cfr13I	GGNCC	4 cut(s)	347, 512, 628, 707
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	3 cut(s)	208, 313, 988
CviAII	CATG	4 cut(s)	181, 299, 625, 1018
CviQI	GTAC	3 cut(s)	208, 313, 988
DdeI	CTNAG	2 cut(s)	96, 852
DpnI	GATC	3 cut(s)	503, 694, 819
DpnII	GATC	3 cut(s)	501, 692, 817
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	725
Eco31I	GGTCTC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	512
Eco57I	CTGAAG	2 cut(s)	585, 856
EcoO109I	RGGNCCY	2 cut(s)	347, 707
EcoRII	CCWGG	4 cut(s)	213, 340, 532, 710
EcoT14I	CCWWGG	1 cut(s)	725
EcoT22I	ATGCAT	1 cut(s)	868
ErhI	CCWWGG	1 cut(s)	725
FaeI	CATG	4 cut(s)	184, 302, 628, 1021
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	1 cut(s)	792
FatI	CATG	4 cut(s)	180, 298, 624, 1017
FauNDI	CATATG	1 cut(s)	460
Fnu4HI	GCNGC	5 cut(s)	120, 186, 571, 966, 978
FokI	GGATG	1 cut(s)	502
Fsp4HI	GCNGC	5 cut(s)	120, 186, 571, 966, 978
FspBI	CTAG	2 cut(s)	321, 947
GlaI	GCGC	2 cut(s)	189, 271
GluI	GCNGC	5 cut(s)	120, 186, 571, 966, 978
GsuI	CTGGAG	2 cut(s)	197, 363
HaeIII	GGCC	6 cut(s)	349, 440, 570, 630, 666, 708
HapII	CCGG	1 cut(s)	507
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	2 cut(s)	190, 272
Hin1II	CATG	4 cut(s)	184, 302, 628, 1021
Hin6I	GCGC	2 cut(s)	188, 270
HinP1I	GCGC	2 cut(s)	188, 270
HinfI	GANTC	4 cut(s)	86, 545, 780, 1024
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	4 cut(s)	46, 170, 199, 988
Hpy188I	TCNGA	5 cut(s)	85, 637, 795, 907, 939
Hpy188III	TCNNGA	3 cut(s)	364, 578, 660
Hpy8I	GTNNAC	4 cut(s)	46, 170, 199, 988
Hpy99I	CGWCG	3 cut(s)	320, 799, 834
HpyAV	CCTTC	7 cut(s)	220, 251, 430, 560, 584, 698, 936
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4IV	ACGT	2 cut(s)	166, 311
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 267, 705, 974
HpyF3I	CTNAG	2 cut(s)	96, 852
HpySE526I	ACGT	2 cut(s)	166, 311
Hsp92II	CATG	4 cut(s)	184, 302, 628, 1021
HspAI	GCGC	2 cut(s)	188, 270
Kzo9I	GATC	3 cut(s)	501, 692, 817
LmnI	GCTCC	3 cut(s)	277, 721, 940
Lsp1109I	GCAGC	4 cut(s)	131, 172, 952, 964
LweI	GCATC	4 cut(s)	292, 571, 605, 853
MaeI	CTAG	2 cut(s)	321, 947
MaeII	ACGT	2 cut(s)	166, 311
MaeIII	GTNAC	1 cut(s)	949
MalI	GATC	3 cut(s)	503, 694, 819
MboI	GATC	3 cut(s)	501, 692, 817
MboII	GAAGA	7 cut(s)	81, 84, 386, 440, 862, 921, 1033
MfeI	CAATTG	2 cut(s)	192, 960
MflI	RGATCY	2 cut(s)	692, 817
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	8 cut(s)	32, 141, 148, 192, 219, 731, 908, 960
MlyI	GAGTC	3 cut(s)	539, 774, 1018
MmeI	TCCRAC	2 cut(s)	660, 818
MnlI	CCTC	8 cut(s)	24, 221, 338, 479, 503, 656, 769, 808
Mph1103I	ATGCAT	1 cut(s)	868
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	3 cut(s)	380, 522, 605
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	4 cut(s)	215, 342, 534, 712
MunI	CAATTG	2 cut(s)	192, 960
Mva1269I	GAATGC	1 cut(s)	866
MvaI	CCWGG	4 cut(s)	215, 342, 534, 712
MwoI	GCNNNNNNNGC	4 cut(s)	182, 267, 705, 974
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	3 cut(s)	501, 692, 817
NlaIII	CATG	4 cut(s)	184, 302, 628, 1021
NlaIV	GGNNCC	4 cut(s)	709, 723, 819, 936
NmeAIII	GCCGAG	1 cut(s)	260
NsiI	ATGCAT	1 cut(s)	868
PctI	GAATGC	1 cut(s)	866
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	86
Pfl23II	CGTACG	1 cut(s)	312
PflMI	CCANNNNNTGG	1 cut(s)	673
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	5 cut(s)	121, 187, 572, 967, 979
PleI	GAGTC	3 cut(s)	539, 774, 1018
PpsI	GAGTC	3 cut(s)	539, 774, 1018
Psp6I	CCWGG	4 cut(s)	213, 340, 532, 710
PspGI	CCWGG	4 cut(s)	213, 340, 532, 710
PspLI	CGTACG	1 cut(s)	312
PspN4I	GGNNCC	4 cut(s)	709, 723, 819, 936
PspPI	GGNCC	4 cut(s)	347, 512, 628, 707
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	692, 817
RsaI	GTAC	3 cut(s)	209, 314, 989
RsaNI	GTAC	3 cut(s)	208, 313, 988
SaqAI	TTAA	3 cut(s)	380, 522, 605
SatI	GCNGC	5 cut(s)	120, 186, 571, 966, 978
Sau3AI	GATC	3 cut(s)	501, 692, 817
Sau96I	GGNCC	4 cut(s)	347, 512, 628, 707
SchI	GAGTC	3 cut(s)	539, 774, 1018
ScrFI	CCNGG	4 cut(s)	215, 342, 534, 712
SduI	GDGCHC	1 cut(s)	250
SfaNI	GCATC	4 cut(s)	292, 571, 605, 853
SfcI	CTRYAG	2 cut(s)	411, 495
SinI	GGWCC	1 cut(s)	512
Sse9I	AATT	8 cut(s)	32, 141, 148, 192, 219, 731, 908, 960
SsiI	CCGC	2 cut(s)	571, 622
SspMI	CTAG	2 cut(s)	321, 947
StyD4I	CCNGG	4 cut(s)	213, 340, 532, 710
StyI	CCWWGG	1 cut(s)	725
TaaI	ACNGT	1 cut(s)	389
TaiI	ACGT	2 cut(s)	169, 314
TaqI	TCGA	1 cut(s)	735
TasI	AATT	8 cut(s)	32, 141, 148, 192, 219, 731, 908, 960
TauI	GCSGC	1 cut(s)	573
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	3 cut(s)	380, 522, 605
Tru9I	TTAA	3 cut(s)	380, 522, 605
TscAI	CASTG	2 cut(s)	394, 828
TseI	GCWGC	4 cut(s)	119, 185, 965, 977
TspDTI	ATGAA	1 cut(s)	1034
TspGWI	ACGGA	3 cut(s)	788, 812, 818
TspRI	CASTG	2 cut(s)	394, 828
Van91I	CCANNNNNTGG	1 cut(s)	673
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	2 cut(s)	148, 731
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	321, 947
Zsp2I	ATGCAT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.