Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009763

Physical Location & Seq

Genomic Coordinates Forward (+)

19973124 .. 19974988

Gene Structure 1865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1243000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTGCGCCAGTAGTAAACGAAGAGTACCTCAAGGAAATTGAGAAGGCTCGCCGAGACCTTCGTGCTCTTATCTACAGCAAGAACTGCGCTCCTATAATGCTTCGTATAGCGTGGCATGACGCTGCAACGTACGATGCTAGACTAAAGACGAGAATACCTGGAGGACCTAATGGCTCAATCAGGAACAAGGAAGAGTTAAGTCACAGTGGAAATAAGGGATTGGAAACTGCAGTTGAGTTATGTGAACAAGTAAAGGCCAAACACCCAAAAATCACATATGCTGATCTCTACCAGCTTGCTGGGGTTGTTGCAGTGGAGATCACCGGAGGTCCATCCATTGACTTTGTTCCGGGTAGAAAGGATTCGAATCAATCTCCACCCGAAGGCCGCCTTCCAGATGCCAAACTTGGTGCATCACATTTAAGGGAAGTTTTCTATCGGATGGGTCTGTCTGACAAGGACATTGTGGTATTATCTGGAGGCCATACACTGGGAAAGGAACATAAGAGATCTGGCTTTCAAGGCCCCTGGACAAAGGAGCCTTCAAAATTCGACAACTCATACTTCGTGGACCTATTGAAAGGGGAAACGGAGGGACTCTTACAACTTCCCACAGACAAGGCTTTGGTGGAGGATCCTGTGTTCCGTCGCTATGTTGAGCTATATGCAAGGGATAATGATGCATTCTTCAGAGATTATGCAGTATCACACAAGAAGCTATCAGAATTAGGCTTTAATCCCCCTTCACAGCGTCCGAAAGTGGTGCTTACTCTTACAATTGCTGCTGCAGTAGTGGCGGCATTGGTGTACGATAAATGCGAAAGTTTCATCAAAAACATGACGAGCCTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

286

Amino Acids

31.69

Weight (kDa)

8.57

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	18 - 226	4.3e-48	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35970 AT4G35970
fragaria_vesca	FvH4_1g11490
malus_domestica	MD02G1127800.v1.1 MD15G1243000.v1.1
prunus_persica	Prupe.7G171100_v2.0.a1 Prupe.7G171100_v2.0.a1
pyrus_communis	pycom02g09990 pycom15g21410
rosa_chinensis	RchiOBHm_Chr2g0099111
rosa_laevigata	RLG00000016849
rosa_multiflora	Rmu_sc0009113.1_g000007 Rmu_sc0012098.1_g000003 Rmu_sc0034643.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143430
rosa_rugosa	Rorug02G0076800
rosa_samantha	Rh2AG125900 Rh2BG129200 Rh2CG130200 Rh2DG130600
rosa_wichuraiana	Rw2G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	493
AciI	CCGC	2 cut(s)	391, 800
AclWI	GGATC	2 cut(s)	632, 645
AcsI	RAATTY	1 cut(s)	551
AcuI	CTGAAG	1 cut(s)	676
AfaI	GTAC	3 cut(s)	29, 134, 812
AfiI	CCNNNNNNNGG	2 cut(s)	386, 493
AgsI	TTSAA	3 cut(s)	524, 549, 583
AjnI	CCWGG	2 cut(s)	160, 530
AloI	GAACNNNNNNTCC	2 cut(s)	629, 661
AluBI	AGCT	3 cut(s)	298, 664, 721
AluI	AGCT	3 cut(s)	298, 664, 721
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	632, 645
AoxI	GGCC	4 cut(s)	258, 388, 484, 526
ApeKI	GCWGC	4 cut(s)	5, 125, 785, 788
ApoI	RAATTY	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	364
AspLEI	GCGC	2 cut(s)	10, 92
AspS9I	GGNCC	4 cut(s)	167, 332, 527, 574
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	316
AsuII	TTCGAA	1 cut(s)	368
AvaII	GGWCC	3 cut(s)	167, 332, 574
BamHI	GGATCC	1 cut(s)	637
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	3 cut(s)	112, 772, 775
BccI	CCATC	2 cut(s)	343, 439
BcgI	CGANNNNNNTGC	2 cut(s)	748, 782
BciT130I	CCWGG	2 cut(s)	162, 532
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	3 cut(s)	76, 231, 789
BglII	AGATCT	1 cut(s)	512
BisI	GCNGC	6 cut(s)	6, 126, 391, 786, 789, 801
BlsI	GCNGC	6 cut(s)	7, 127, 392, 787, 790, 802
Bme1390I	CCNGG	3 cut(s)	162, 354, 532
Bme18I	GGWCC	3 cut(s)	167, 332, 574
BmgT120I	GGNCC	4 cut(s)	167, 332, 527, 574
BmiI	GGNNCC	3 cut(s)	529, 543, 639
BmrFI	CCNGG	3 cut(s)	162, 354, 532
BmrI	ACTGGG	1 cut(s)	503
BmsI	GCATC	4 cut(s)	127, 391, 425, 673
BmuI	ACTGGG	1 cut(s)	503
BpmI	CTGGAG	2 cut(s)	183, 501
Bpu14I	TTCGAA	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	530
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 493
Bse1I	ACTGG	2 cut(s)	11, 498
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	162, 532
BseDI	CCNNGG	1 cut(s)	530
BseGI	GGATG	2 cut(s)	335, 450
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	386, 493
BseNI	ACTGG	2 cut(s)	11, 498
BseXI	GCAGC	3 cut(s)	112, 772, 775
BseYI	CCCAGC	1 cut(s)	302
BshFI	GGCC	4 cut(s)	260, 390, 486, 528
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	327, 353
BsiWI	CGTACG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	612
BslI	CCNNNNNNNGG	2 cut(s)	386, 493
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	612
BsmI	GAATGC	1 cut(s)	686
BsnI	GGCC	4 cut(s)	260, 390, 486, 528
Bso31I	GGTCTC	1 cut(s)	51
Bsp119I	TTCGAA	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	286, 321, 512, 637
BspACI	CCGC	2 cut(s)	391, 800
BspANI	GGCC	4 cut(s)	260, 390, 486, 528
BspLI	GGNNCC	3 cut(s)	529, 543, 639
BspMAI	CTGCAG	2 cut(s)	235, 793
BspPI	GGATC	2 cut(s)	632, 645
BspT104I	TTCGAA	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	11, 498
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	4 cut(s)	286, 321, 512, 637
Bst2UI	CCWGG	2 cut(s)	162, 532
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	2 cut(s)	18, 189
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	52, 300
BstF5I	GGATG	2 cut(s)	335, 450
BstHHI	GCGC	2 cut(s)	10, 92
BstKTI	GATC	4 cut(s)	289, 324, 515, 640
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	4 cut(s)	286, 321, 512, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 525, 797
BstNI	CCWGG	2 cut(s)	162, 532
BstSCI	CCNGG	3 cut(s)	160, 352, 530
BstSFI	CTRYAG	3 cut(s)	76, 231, 789
BstV1I	GCAGC	3 cut(s)	112, 772, 775
BstX2I	RGATCY	2 cut(s)	512, 637
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	2 cut(s)	512, 637
BsuRI	GGCC	4 cut(s)	260, 390, 486, 528
BtsCI	GGATG	2 cut(s)	335, 450
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	3 cut(s)	214, 321, 491
Cac8I	GCNNGC	2 cut(s)	52, 300
CfoI	GCGC	2 cut(s)	10, 92
Cfr13I	GGNCC	4 cut(s)	167, 332, 527, 574
CseI	GACGC	2 cut(s)	131, 743
Csp6I	GTAC	3 cut(s)	28, 133, 811
CviAII	CATG	2 cut(s)	119, 841
CviQI	GTAC	3 cut(s)	28, 133, 811
DpnI	GATC	4 cut(s)	288, 323, 514, 639
DpnII	GATC	4 cut(s)	286, 321, 512, 637
Eam1104I	CTCTTC	2 cut(s)	18, 189
EarI	CTCTTC	2 cut(s)	18, 189
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	3 cut(s)	167, 332, 574
Eco57I	CTGAAG	1 cut(s)	676
EcoO109I	RGGNCCY	2 cut(s)	167, 527
EcoRII	CCWGG	2 cut(s)	160, 530
EcoT22I	ATGCAT	1 cut(s)	688
FaeI	CATG	2 cut(s)	122, 844
FalI	AAGNNNNNCTT	4 cut(s)	378, 410, 753, 785
FaqI	GGGAC	1 cut(s)	612
FatI	CATG	2 cut(s)	118, 840
FauNDI	CATATG	1 cut(s)	280
Fnu4HI	GCNGC	6 cut(s)	6, 126, 391, 786, 789, 801
FokI	GGATG	2 cut(s)	322, 457
Fsp4HI	GCNGC	6 cut(s)	6, 126, 391, 786, 789, 801
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	2 cut(s)	9, 91
GluI	GCNGC	6 cut(s)	6, 126, 391, 786, 789, 801
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	2 cut(s)	183, 501
HaeIII	GGCC	4 cut(s)	260, 390, 486, 528
HapII	CCGG	2 cut(s)	327, 353
HgaI	GACGC	2 cut(s)	131, 743
HhaI	GCGC	2 cut(s)	10, 92
Hin1II	CATG	2 cut(s)	122, 844
Hin6I	GCGC	2 cut(s)	8, 90
HinP1I	GCGC	2 cut(s)	8, 90
HinfI	GANTC	3 cut(s)	365, 370, 600
HpaII	CCGG	2 cut(s)	327, 353
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	4 cut(s)	19, 248, 574, 811
Hpy188I	TCNGA	5 cut(s)	444, 457, 695, 727, 759
Hpy188III	TCNNGA	3 cut(s)	184, 398, 480
Hpy8I	GTNNAC	4 cut(s)	19, 248, 574, 811
Hpy99I	CGWCG	1 cut(s)	654
HpyAV	CCTTC	6 cut(s)	40, 71, 380, 404, 555, 756
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	8 cut(s)	128, 233, 314, 416, 671, 686, 704, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 525, 797
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	122, 844
HspAI	GCGC	2 cut(s)	8, 90
Kzo9I	GATC	4 cut(s)	286, 321, 512, 637
LmnI	GCTCC	2 cut(s)	97, 541
Lsp1109I	GCAGC	3 cut(s)	112, 772, 775
LweI	GCATC	4 cut(s)	127, 391, 425, 673
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	4 cut(s)	288, 323, 514, 639
MboI	GATC	4 cut(s)	286, 321, 512, 637
MboII	GAAGA	3 cut(s)	35, 206, 682
MfeI	CAATTG	1 cut(s)	780
MflI	RGATCY	2 cut(s)	512, 637
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	4 cut(s)	39, 551, 728, 780
MlyI	GAGTC	1 cut(s)	594
MnlI	CCTC	6 cut(s)	41, 158, 323, 476, 589, 628
Mph1103I	ATGCAT	1 cut(s)	688
MroXI	GAANNNNTTC	1 cut(s)	364
MseI	TTAA	3 cut(s)	200, 425, 738
MspI	CCGG	2 cut(s)	327, 353
MspR9I	CCNGG	3 cut(s)	162, 354, 532
MunI	CAATTG	1 cut(s)	780
Mva1269I	GAATGC	1 cut(s)	686
MvaI	CCWGG	2 cut(s)	162, 532
MwoI	GCNNNNNNNGC	3 cut(s)	87, 525, 797
NciI	CCSGG	1 cut(s)	354
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	4 cut(s)	286, 321, 512, 637
NlaIII	CATG	2 cut(s)	122, 844
NlaIV	GGNNCC	3 cut(s)	529, 543, 639
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	203
NsiI	ATGCAT	1 cut(s)	688
NspV	TTCGAA	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	819
PctI	GAATGC	1 cut(s)	686
PdmI	GAANNNNTTC	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	365, 370
Pfl23II	CGTACG	1 cut(s)	132
PflMI	CCANNNNNTGG	1 cut(s)	493
PkrI	GCNGC	6 cut(s)	7, 127, 392, 787, 790, 802
PleI	GAGTC	1 cut(s)	594
PpsI	GAGTC	1 cut(s)	594
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	2 cut(s)	160, 530
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	2 cut(s)	160, 530
PspLI	CGTACG	1 cut(s)	132
PspN4I	GGNNCC	3 cut(s)	529, 543, 639
PspPI	GGNCC	4 cut(s)	167, 332, 527, 574
PspPPI	RGGWCCY	1 cut(s)	167
PstI	CTGCAG	2 cut(s)	235, 793
PsuI	RGATCY	2 cut(s)	512, 637
RsaI	GTAC	3 cut(s)	29, 134, 812
RsaNI	GTAC	3 cut(s)	28, 133, 811
SaqAI	TTAA	3 cut(s)	200, 425, 738
SatI	GCNGC	6 cut(s)	6, 126, 391, 786, 789, 801
Sau3AI	GATC	4 cut(s)	286, 321, 512, 637
Sau96I	GGNCC	4 cut(s)	167, 332, 527, 574
SchI	GAGTC	1 cut(s)	594
ScrFI	CCNGG	3 cut(s)	162, 354, 532
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	4 cut(s)	127, 391, 425, 673
SfcI	CTRYAG	3 cut(s)	76, 231, 789
SfuI	TTCGAA	1 cut(s)	368
SinI	GGWCC	3 cut(s)	167, 332, 574
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	4 cut(s)	39, 551, 728, 780
SsiI	CCGC	2 cut(s)	391, 800
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	3 cut(s)	160, 352, 530
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	2 cut(s)	368, 555
TasI	AATT	4 cut(s)	39, 551, 728, 780
TauI	GCSGC	2 cut(s)	393, 803
TfiI	GAWTC	2 cut(s)	365, 370
Tru1I	TTAA	3 cut(s)	200, 425, 738
Tru9I	TTAA	3 cut(s)	200, 425, 738
TscAI	CASTG	3 cut(s)	214, 321, 498
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	4 cut(s)	5, 125, 785, 788
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	820
TspGWI	ACGGA	2 cut(s)	608, 638
TspRI	CASTG	3 cut(s)	214, 321, 498
Van91I	CCANNNNNTGG	1 cut(s)	493
VpaK11BI	GGWCC	3 cut(s)	167, 332, 574
XapI	RAATTY	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	364
XspI	CTAG	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.