Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034643.1

Orthogroup ID

OG0009763

Physical Location & Seq

Genomic Coordinates Reverse (-)

2261 .. 2936

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034643.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgggactgtctgaccaggacattgtggcgctatcaggaggccacacattgggaagggcacatcaggagagatcaggctttgatggaccctggacaaaggagcctgcgaagtttgacaactcatactttgtggaactattgaaaggggagtcagggggactgctgaaacttcccacagacaaggctctagtggaggatcctgggttccatcactttgtcgaactatatgcaaacgatagggatgaattcttcagagactatgcagtatcacacaagaaactatcagaacttggctttagcccaccttcttcaggtcagaaggtaggacttgctcttagcattgctgctgtcttagttctggcagttgtgtgggagttgacagacccgtttctcatatggaaacaatacaataattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

138

Amino Acids

15.29

Weight (kDa)

5.26

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35970 AT4G35970
fragaria_vesca	FvH4_1g11490
malus_domestica	MD02G1127800.v1.1 MD15G1243000.v1.1
prunus_persica	Prupe.7G171100_v2.0.a1 Prupe.7G171100_v2.0.a1
pyrus_communis	pycom02g09990 pycom15g21410
rosa_chinensis	RchiOBHm_Chr2g0099111
rosa_laevigata	RLG00000016849
rosa_multiflora	Rmu_sc0009113.1_g000007 Rmu_sc0012098.1_g000003 Rmu_sc0034643.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143430
rosa_rugosa	Rorug02G0076800
rosa_samantha	Rh2AG125900 Rh2BG129200 Rh2CG130200 Rh2DG130600
rosa_wichuraiana	Rw2G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	49
AclWI	GGATC	2 cut(s)	191, 204
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	2 cut(s)	235, 294
AfiI	CCNNNNNNNGG	2 cut(s)	49, 311
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	3 cut(s)	15, 89, 199
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	191, 204
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	2 cut(s)	77, 216
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	3 cut(s)	17, 91, 201
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	3 cut(s)	17, 91, 201
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	4 cut(s)	88, 102, 198, 206
BmrFI	CCNGG	3 cut(s)	17, 91, 201
BsaJI	CCNNGG	2 cut(s)	89, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 311
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	3 cut(s)	17, 91, 201
BseDI	CCNNGG	2 cut(s)	89, 200
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	49, 311
BseMI	GCAATG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	1 cut(s)	42
BslFI	GGGAC	2 cut(s)	18, 171
BslI	CCNNNNNNNGG	2 cut(s)	49, 311
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	2 cut(s)	18, 171
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	71, 196
BspANI	GGCC	1 cut(s)	42
BspLI	GGNNCC	4 cut(s)	88, 102, 198, 206
BspPI	GGATC	2 cut(s)	191, 204
BsrDI	GCAATG	1 cut(s)	339
BssECI	CCNNGG	2 cut(s)	89, 200
BssMI	GATC	2 cut(s)	71, 196
Bst2UI	CCWGG	3 cut(s)	17, 91, 201
Bst4CI	ACNGT	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	335, 352
BstENI	CCTNNNNNAGG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	74, 199
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	2 cut(s)	71, 196
BstNI	CCWGG	3 cut(s)	17, 91, 201
BstSCI	CCNGG	3 cut(s)	15, 89, 199
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	86
CviJI	RGCY	6 cut(s)	42, 78, 103, 185, 294, 300
CviKI_1	RGCY	6 cut(s)	42, 78, 103, 185, 294, 300
DdeI	CTNAG	2 cut(s)	335, 352
DpnI	GATC	2 cut(s)	73, 198
DpnII	GATC	2 cut(s)	71, 196
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	2 cut(s)	235, 294
EcoNI	CCTNNNNNAGG	1 cut(s)	309
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	3 cut(s)	15, 89, 199
FaiI	YATR	6 cut(s)	124, 226, 228, 261, 395, 397
FaqI	GGGAC	2 cut(s)	18, 171
FauNDI	CATATG	1 cut(s)	395
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	42
HhaI	GCGC	1 cut(s)	31
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	4 cut(s)	13, 254, 286, 318
Hpy188III	TCNNGA	2 cut(s)	36, 65
Hpy8I	GTNNAC	1 cut(s)	378
HpyAV	CCTTC	3 cut(s)	48, 313, 315
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4V	TGCA	2 cut(s)	230, 263
HpyF3I	CTNAG	2 cut(s)	335, 352
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	71, 196
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	188
MalI	GATC	2 cut(s)	73, 198
MboI	GATC	2 cut(s)	71, 196
MboII	GAAGA	2 cut(s)	241, 300
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	2 cut(s)	245, 412
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	2 cut(s)	32, 187
MspR9I	CCNGG	3 cut(s)	17, 91, 201
MvaI	CCWGG	3 cut(s)	17, 91, 201
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	2 cut(s)	71, 196
NlaIV	GGNNCC	4 cut(s)	88, 102, 198, 206
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	3 cut(s)	15, 89, 199
PspGI	CCWGG	3 cut(s)	15, 89, 199
PspN4I	GGNNCC	4 cut(s)	88, 102, 198, 206
PspPI	GGNCC	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	196
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	71, 196
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	3 cut(s)	17, 91, 201
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	3 cut(s)	307, 316, 324
SinI	GGWCC	1 cut(s)	86
Sse9I	AATT	2 cut(s)	245, 412
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	3 cut(s)	15, 89, 199
TaaI	ACNGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	219
TasI	AATT	2 cut(s)	245, 412
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	258
Van91I	CCANNNNNTGG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	86
XagI	CCTNNNNNAGG	1 cut(s)	309
XapI	RAATTY	1 cut(s)	245
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.