Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009763

Physical Location & Seq

Genomic Coordinates Forward (+)

11452588 .. 11454265

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCGGCATTATGGTCTGTAAAGGAAAAGCAACTCTACCTCCAGGAAATTGAGAGGGCTCGCCAAGACCTTCGTGCTCTTATCTACAGCAAGAACTGCGCTCCTATCATGCTTCGTTTAGCGTGGCATGATGCTGGAACATATGATGCTTTTACAAAAACTGGAGGGCCTAATGGCTCAATCAGGAATGAGGAAGAGTTAAAACATAGCGCAAATAATGGATTGAAAATCGCGGTTGACTTATGTGAAGAAGTGAAGGCCAAGCACCCAAAAATTACATATGCTGACCTCTACCAGCTTGCTGGGGTTGTTGCAATAGAGGTCACTGGAGGTCCACCTATTGACTTTGTTCCGGGTAGAAAGGACTCAAAGCAGTCACCACCAGAAGGGCGCCTTCCAGATGCCAAACTCGGTGCATCACATTTAAGGGATACTTTCTACCGTATGGGACTGTCTGACCAGGACATTGTGGCGCTATCAGGAGGCCACACATTGGGAAGGGCACATCAGGAGAGATCAGGCTTTGATGGACCCTGGACAAAGGAGCCTGCGAAGTTTGACAACTCATACTTTGTGGAACTATTGAAAGGGGAGTCAGAGGGACTGCTGAAACTTCCCACAGACAAGGCTCTAGTGGAGGATCCTGGGTTCCATCACTATGTCGAACTATATGCAAACGATAAGGATGCATTCTTCAGAGACTATGCAGTATCACACAAGAAACTATCAGAACTTGGCTTTAGCCCACCTTCTTCAGGTCAGAAGGTAGGACTTGCTCTTAGCATTGCTGCTGTCTTAGTTCTGGCAGTTGTGTGGGAGTTGACAGACCCGTTTCTCATATGGAAACAATACAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

286

Amino Acids

31.74

Weight (kDa)

6.15

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	21 - 227	1.7e-49	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35970 AT4G35970
fragaria_vesca	FvH4_1g11490
malus_domestica	MD02G1127800.v1.1 MD15G1243000.v1.1
prunus_persica	Prupe.7G171100_v2.0.a1 Prupe.7G171100_v2.0.a1
pyrus_communis	pycom02g09990 pycom15g21410
rosa_chinensis	RchiOBHm_Chr2g0099111
rosa_laevigata	RLG00000016849
rosa_multiflora	Rmu_sc0009113.1_g000007 Rmu_sc0012098.1_g000003 Rmu_sc0034643.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143430
rosa_rugosa	Rorug02G0076800
rosa_samantha	Rh2AG125900 Rh2BG129200 Rh2CG130200 Rh2DG130600
rosa_wichuraiana	Rw2G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	390
AccB7I	CCANNNNNTGG	1 cut(s)	493
AccII	CGCG	1 cut(s)	233
AciI	CCGC	2 cut(s)	5, 233
AclWI	GGATC	2 cut(s)	635, 648
AcuI	CTGAAG	2 cut(s)	679, 738
AcyI	GRCGYC	1 cut(s)	391
AfiI	CCNNNNNNNGG	3 cut(s)	386, 493, 755
AgsI	TTSAA	2 cut(s)	226, 586
AjnI	CCWGG	4 cut(s)	42, 459, 533, 643
AloI	GAACNNNNNNTCC	2 cut(s)	632, 664
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	693
AlwI	GGATC	2 cut(s)	635, 648
AoxI	GGCC	3 cut(s)	167, 258, 484
ApeKI	GCWGC	1 cut(s)	788
AspLEI	GCGC	4 cut(s)	101, 212, 393, 475
AspS9I	GGNCC	3 cut(s)	167, 332, 530
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	369
AvaII	GGWCC	2 cut(s)	332, 530
BaeGI	GKGCMC	1 cut(s)	505
BamHI	GGATCC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	2 cut(s)	521, 660
BcgI	CGANNNNNNTGC	4 cut(s)	653, 668, 687, 702
BciT130I	CCWGG	4 cut(s)	44, 461, 535, 645
BciVI	GTATCC	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	693
BfaI	CTAG	1 cut(s)	632
BfmI	CTRYAG	1 cut(s)	85
BfoI	RGCGCY	2 cut(s)	394, 476
BfuI	GTATCC	1 cut(s)	424
BisI	GCNGC	2 cut(s)	6, 789
BlsI	GCNGC	2 cut(s)	7, 790
Bme1390I	CCNGG	5 cut(s)	44, 354, 461, 535, 645
Bme18I	GGWCC	2 cut(s)	332, 530
BmgT120I	GGNCC	3 cut(s)	167, 332, 530
BmiI	GGNNCC	5 cut(s)	392, 532, 546, 642, 650
BmrFI	CCNGG	5 cut(s)	44, 354, 461, 535, 645
BmsI	GCATC	5 cut(s)	121, 136, 391, 425, 676
BpmI	CTGGAG	3 cut(s)	26, 183, 348
BpuMI	CCSGG	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	533, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 493, 755
Bse1I	ACTGG	2 cut(s)	166, 331
Bse3DI	GCAATG	1 cut(s)	783
BseBI	CCWGG	4 cut(s)	44, 461, 535, 645
BseDI	CCNNGG	2 cut(s)	533, 644
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	3 cut(s)	386, 493, 755
BseMI	GCAATG	1 cut(s)	783
BseNI	ACTGG	2 cut(s)	166, 331
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	775
BseYI	CCCAGC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	169, 260, 486
BshNI	GGYRCC	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	353
BslFI	GGGAC	2 cut(s)	462, 615
BslI	CCNNNNNNNGG	3 cut(s)	386, 493, 755
BsmAI	GTCTC	1 cut(s)	693
BsmFI	GGGAC	2 cut(s)	462, 615
BsmI	GAATGC	1 cut(s)	689
BsnI	GGCC	3 cut(s)	169, 260, 486
Bsp1286I	GDGCHC	3 cut(s)	61, 79, 505
Bsp143I	GATC	2 cut(s)	515, 640
BspACI	CCGC	2 cut(s)	5, 233
BspANI	GGCC	3 cut(s)	169, 260, 486
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	5 cut(s)	392, 532, 546, 642, 650
BspPI	GGATC	2 cut(s)	635, 648
BspT107I	GGYRCC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	783
BsrI	ACTGG	2 cut(s)	166, 331
BssECI	CCNNGG	2 cut(s)	533, 644
BssMI	GATC	2 cut(s)	515, 640
BssNI	GRCGYC	1 cut(s)	391
Bst2UI	CCWGG	4 cut(s)	44, 461, 535, 645
Bst4CI	ACNGT	2 cut(s)	443, 453
Bst6I	CTCTTC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	61, 300, 549
BstDEI	CTNAG	2 cut(s)	779, 796
BstENI	CCTNNNNNAGG	1 cut(s)	753
BstF5I	GGATG	1 cut(s)	691
BstFNI	CGCG	1 cut(s)	233
BstH2I	RGCGCY	2 cut(s)	394, 476
BstHHI	GCGC	4 cut(s)	101, 212, 393, 475
BstKTI	GATC	2 cut(s)	518, 643
BstMAI	GTCTC	1 cut(s)	693
BstMBI	GATC	2 cut(s)	515, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	4 cut(s)	44, 461, 535, 645
BstSCI	CCNGG	5 cut(s)	42, 352, 459, 533, 643
BstSFI	CTRYAG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	505
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	775
BstX2I	RGATCY	1 cut(s)	640
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	640
BsuI	GTATCC	1 cut(s)	424
BsuRI	GGCC	3 cut(s)	169, 260, 486
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	3 cut(s)	61, 300, 549
CfoI	GCGC	4 cut(s)	101, 212, 393, 475
Cfr13I	GGNCC	3 cut(s)	167, 332, 530
CviAII	CATG	2 cut(s)	109, 128
DdeI	CTNAG	2 cut(s)	779, 796
DinI	GGCGCC	1 cut(s)	392
DpnI	GATC	2 cut(s)	517, 642
DpnII	GATC	2 cut(s)	515, 640
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	332, 530
Eco57I	CTGAAG	2 cut(s)	679, 738
EcoNI	CCTNNNNNAGG	1 cut(s)	753
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	4 cut(s)	42, 459, 533, 643
EcoT22I	ATGCAT	1 cut(s)	691
EcoT38I	GRGCYC	1 cut(s)	61
EgeI	GGCGCC	1 cut(s)	392
EheI	GGCGCC	1 cut(s)	392
FaeI	CATG	2 cut(s)	112, 131
FalI	AAGNNNNNCTT	4 cut(s)	378, 410, 418, 450
FaqI	GGGAC	2 cut(s)	462, 615
FatI	CATG	2 cut(s)	108, 127
FauNDI	CATATG	3 cut(s)	142, 280, 839
Fnu4HI	GCNGC	2 cut(s)	6, 789
FokI	GGATG	1 cut(s)	698
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	6, 789
FspBI	CTAG	1 cut(s)	632
GlaI	GCGC	4 cut(s)	100, 211, 392, 474
GluI	GCNGC	2 cut(s)	6, 789
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	3 cut(s)	26, 183, 348
HaeII	RGCGCY	2 cut(s)	394, 476
HaeIII	GGCC	3 cut(s)	169, 260, 486
HapII	CCGG	1 cut(s)	353
HhaI	GCGC	4 cut(s)	101, 212, 393, 475
Hin1I	GRCGYC	1 cut(s)	391
Hin1II	CATG	2 cut(s)	112, 131
Hin6I	GCGC	4 cut(s)	99, 210, 391, 473
HinP1I	GCGC	4 cut(s)	99, 210, 391, 473
HincII	GTYRAC	2 cut(s)	238, 822
HindII	GTYRAC	2 cut(s)	238, 822
HinfI	GANTC	2 cut(s)	365, 593
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	1 cut(s)	369
Hpy166II	GTNNAC	3 cut(s)	238, 335, 822
Hpy188I	TCNGA	5 cut(s)	457, 598, 698, 730, 762
Hpy188III	TCNNGA	4 cut(s)	184, 398, 480, 509
Hpy8I	GTNNAC	3 cut(s)	238, 335, 822
HpyAV	CCTTC	7 cut(s)	80, 250, 380, 404, 492, 757, 759
HpyCH4III	ACNGT	2 cut(s)	443, 453
HpyCH4V	TGCA	5 cut(s)	314, 416, 674, 689, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	2 cut(s)	779, 796
Hsp92I	GRCGYC	1 cut(s)	391
Hsp92II	CATG	2 cut(s)	112, 131
HspAI	GCGC	4 cut(s)	99, 210, 391, 473
KasI	GGCGCC	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	515, 640
LmnI	GCTCC	2 cut(s)	106, 544
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	5 cut(s)	121, 136, 391, 425, 676
MaeI	CTAG	1 cut(s)	632
MaeIII	GTNAC	2 cut(s)	322, 375
MalI	GATC	2 cut(s)	517, 642
MboI	GATC	2 cut(s)	515, 640
MboII	GAAGA	4 cut(s)	206, 260, 685, 744
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	3 cut(s)	61, 79, 505
MluCI	AATT	3 cut(s)	48, 273, 856
Mly113I	GGCGCC	1 cut(s)	391
MlyI	GAGTC	2 cut(s)	359, 602
Mph1103I	ATGCAT	1 cut(s)	691
MseI	TTAA	2 cut(s)	200, 425
MslI	CAYNNNNRTG	1 cut(s)	657
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	5 cut(s)	44, 354, 461, 535, 645
Mva1269I	GAATGC	1 cut(s)	689
MvaI	CCWGG	4 cut(s)	44, 461, 535, 645
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	96
NarI	GGCGCC	1 cut(s)	391
NciI	CCSGG	1 cut(s)	354
NdeI	CATATG	3 cut(s)	142, 280, 839
NdeII	GATC	2 cut(s)	515, 640
NlaIII	CATG	2 cut(s)	112, 131
NlaIV	GGNNCC	5 cut(s)	392, 532, 546, 642, 650
NmuCI	GTSAC	2 cut(s)	322, 375
NsiI	ATGCAT	1 cut(s)	691
PctI	GAATGC	1 cut(s)	689
PflMI	CCANNNNNTGG	1 cut(s)	493
PfoI	TCCNGGA	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	7, 790
PleI	GAGTC	2 cut(s)	359, 601
PluTI	GGCGCC	1 cut(s)	394
PpsI	GAGTC	2 cut(s)	359, 601
Psp6I	CCWGG	4 cut(s)	42, 459, 533, 643
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	4 cut(s)	42, 459, 533, 643
PspN4I	GGNNCC	5 cut(s)	392, 532, 546, 642, 650
PspPI	GGNCC	3 cut(s)	167, 332, 530
PsuI	RGATCY	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	657
SaqAI	TTAA	2 cut(s)	200, 425
SatI	GCNGC	2 cut(s)	6, 789
Sau3AI	GATC	2 cut(s)	515, 640
Sau96I	GGNCC	3 cut(s)	167, 332, 530
SchI	GAGTC	2 cut(s)	359, 602
ScrFI	CCNGG	5 cut(s)	44, 354, 461, 535, 645
SduI	GDGCHC	3 cut(s)	61, 79, 505
SfaNI	GCATC	5 cut(s)	121, 136, 391, 425, 676
SfcI	CTRYAG	1 cut(s)	85
SfoI	GGCGCC	1 cut(s)	392
SinI	GGWCC	2 cut(s)	332, 530
SmiMI	CAYNNNNRTG	1 cut(s)	657
Sse9I	AATT	3 cut(s)	48, 273, 856
SsiI	CCGC	2 cut(s)	5, 233
SspDI	GGCGCC	1 cut(s)	390
SspMI	CTAG	1 cut(s)	632
StyD4I	CCNGG	5 cut(s)	42, 352, 459, 533, 643
TaaI	ACNGT	2 cut(s)	443, 453
TaqI	TCGA	1 cut(s)	663
TasI	AATT	3 cut(s)	48, 273, 856
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	200, 425
Tru9I	TTAA	2 cut(s)	200, 425
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	2 cut(s)	322, 375
TseI	GCWGC	1 cut(s)	788
Tsp45I	GTSAC	2 cut(s)	322, 375
TspRI	CASTG	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	493
VpaK11BI	GGWCC	2 cut(s)	332, 530
XagI	CCTNNNNNAGG	1 cut(s)	753
XspI	CTAG	1 cut(s)	632
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.