Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009763

Physical Location & Seq

Genomic Coordinates Reverse (-)

6094639 .. 6095277

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0076800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATTTCCCCTATCTTCCTCTTCGTGTTTTCTTTTATTCTTTCATGTTCCTATGCTTTACACGTCCAAGACTTCTGTGTTGCAGACTACGCAGCTCCCCAAGGCCCTGCAGGCTACTCATGCAAAGACCCTGCAAAGGTTACCGTAGATGATTTCGTCCACTCGGGCCTTGGGGTGCCTGCTAACACTTCAAACATGTACAAGTTTGGATTCACAGCTGCATTTGCTTTTAACTTCCCCGGCCTCAATGGCCTTGGCGTTTCCATGGGTCGTGCAGACGTGGAAGTTGGCGGTGTTGTCCCTATCCACTCTCACCCCGGAGCTACCGAACTAGTGGTTATTGGGGAAGGAAGTTCGATAATTGGCGGGTTCATTGCCTCGAACAACAAGGTTTACCAAAAGCCCCTGAACAAGGGTGACACTATGGTTCTTCCTCAAGGCTTGTATCACTTCTTTGTGAATCAGGGTAAAACTCCGGCGGTCATATATGCTTCTTTCAGTAGTGAAAGCCCAACTGTGCAACTTTTGGACACATCACTGTTTCAAAATGATTTGGCTACTGATATCATTGCAAAGACTACTTTACTTGACGCTGCTCAGATTCAGAAACTCAAAGAACTCTTTGGTGGTACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

212

Amino Acids

22.51

Weight (kDa)

5.38

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	56 - 201	5.3e-30	Cupin
Cupin_2	PF07883	92 - 164	1.1e-06	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35970 AT4G35970
fragaria_vesca	FvH4_1g11490
malus_domestica	MD02G1127800.v1.1 MD15G1243000.v1.1
prunus_persica	Prupe.7G171100_v2.0.a1 Prupe.7G171100_v2.0.a1
pyrus_communis	pycom02g09990 pycom15g21410
rosa_chinensis	RchiOBHm_Chr2g0099111
rosa_laevigata	RLG00000016849
rosa_multiflora	Rmu_sc0009113.1_g000007 Rmu_sc0012098.1_g000003 Rmu_sc0034643.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143430
rosa_rugosa	Rorug02G0076800
rosa_samantha	Rh2AG125900 Rh2BG129200 Rh2CG130200 Rh2DG130600
rosa_wichuraiana	Rw2G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AciI	CCGC	3 cut(s)	291, 366, 479
AfaI	GTAC	2 cut(s)	200, 631
AfiI	CCNNNNNNNGG	2 cut(s)	136, 412
AflIII	ACRYGT	2 cut(s)	61, 195
AgsI	TTSAA	2 cut(s)	192, 545
AhlI	ACTAGT	1 cut(s)	331
AjiI	CACGTC	2 cut(s)	64, 280
AluBI	AGCT	3 cut(s)	95, 218, 323
AluI	AGCT	3 cut(s)	95, 218, 323
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	4 cut(s)	103, 166, 241, 250
ApeKI	GCWGC	3 cut(s)	92, 218, 593
AspS9I	GGNCC	2 cut(s)	104, 166
AsuC2I	CCSGG	2 cut(s)	240, 318
AsuHPI	GGTGA	2 cut(s)	305, 428
AvaI	CYCGRG	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	175
BbvI	GCAGC	3 cut(s)	104, 205, 580
BcnI	CCSGG	2 cut(s)	240, 318
BcuI	ACTAGT	1 cut(s)	331
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	108
BglI	GCCNNNNNGGC	2 cut(s)	111, 249
BisI	GCNGC	3 cut(s)	93, 219, 594
BlsI	GCNGC	3 cut(s)	94, 220, 595
Bme1390I	CCNGG	2 cut(s)	240, 318
BmeT110I	CYCGRG	1 cut(s)	163
BmgBI	CACGTC	2 cut(s)	64, 280
BmgT120I	GGNCC	2 cut(s)	104, 166
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	240, 318
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	2 cut(s)	240, 318
BsaJI	CCNNGG	6 cut(s)	100, 169, 238, 253, 264, 316
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 412
Bse3DI	GCAATG	2 cut(s)	372, 567
BseDI	CCNNGG	6 cut(s)	100, 169, 238, 253, 264, 316
BseLI	CCNNNNNNNGG	2 cut(s)	136, 412
BseMI	GCAATG	2 cut(s)	372, 567
BseMII	CTCAG	1 cut(s)	611
BseXI	GCAGC	3 cut(s)	104, 205, 580
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	4 cut(s)	105, 168, 243, 252
BshNI	GGYRCC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	240, 318, 476
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	136, 412
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	4 cut(s)	105, 168, 243, 252
BsoBI	CYCGRG	1 cut(s)	163
Bsp1407I	TGTACA	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	291, 366, 479
BspANI	GGCC	4 cut(s)	105, 168, 243, 252
BspCNI	CTCAG	1 cut(s)	610
BspLI	GGNNCC	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	372, 567
BsrGI	TGTACA	1 cut(s)	198
BssECI	CCNNGG	6 cut(s)	100, 169, 238, 253, 264, 316
BssT1I	CCWWGG	4 cut(s)	100, 169, 253, 264
Bst4CI	ACNGT	3 cut(s)	145, 517, 540
Bst6I	CTCTTC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	112, 180
BstDEI	CTNAG	1 cut(s)	597
BstDSI	CCRYGG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	139
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 111, 120, 224, 249
BstNSI	RCATGY	1 cut(s)	199
BstPI	GGTNACC	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	238, 316
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	3 cut(s)	104, 205, 580
BsuRI	GGCC	4 cut(s)	105, 168, 243, 252
BtgI	CCRYGG	1 cut(s)	264
BtrI	CACGTC	2 cut(s)	64, 280
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	2 cut(s)	112, 180
Cfr13I	GGNCC	2 cut(s)	104, 166
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	199, 630
CviAII	CATG	4 cut(s)	45, 120, 196, 265
CviQI	GTAC	2 cut(s)	199, 630
DdeI	CTNAG	1 cut(s)	597
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	4 cut(s)	100, 169, 253, 264
Eco32I	GATATC	1 cut(s)	565
Eco88I	CYCGRG	1 cut(s)	163
Eco91I	GGTNACC	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	139
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	4 cut(s)	100, 169, 253, 264
ErhI	CCWWGG	4 cut(s)	100, 169, 253, 264
FaeI	CATG	4 cut(s)	48, 123, 199, 268
FaiI	YATR	9 cut(s)	46, 54, 121, 197, 266, 425, 485, 487, 489
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	4 cut(s)	44, 119, 195, 264
FauI	CCCGC	1 cut(s)	359
Fnu4HI	GCNGC	3 cut(s)	93, 219, 594
Fsp4HI	GCNGC	3 cut(s)	93, 219, 594
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	3 cut(s)	93, 219, 594
HaeIII	GGCC	4 cut(s)	105, 168, 243, 252
HapII	CCGG	3 cut(s)	240, 318, 476
HgaI	GACGC	1 cut(s)	599
Hin1II	CATG	4 cut(s)	48, 123, 199, 268
HinfI	GANTC	3 cut(s)	210, 460, 601
HpaII	CCGG	3 cut(s)	240, 318, 476
HphI	GGTGA	2 cut(s)	305, 428
Hpy166II	GTNNAC	2 cut(s)	160, 394
Hpy188I	TCNGA	2 cut(s)	600, 606
Hpy8I	GTNNAC	2 cut(s)	160, 394
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	3 cut(s)	145, 517, 540
HpyCH4IV	ACGT	2 cut(s)	63, 279
HpyCH4V	TGCA	8 cut(s)	83, 110, 123, 134, 221, 275, 520, 572
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 111, 120, 224, 249
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	2 cut(s)	63, 279
Hsp92II	CATG	4 cut(s)	48, 123, 199, 268
LmnI	GCTCC	2 cut(s)	100, 320
LpnPI	CCDG	9 cut(s)	96, 120, 144, 192, 253, 331, 419, 449, 489
Lsp1109I	GCAGC	3 cut(s)	104, 205, 580
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	63, 279
MaeIII	GTNAC	2 cut(s)	139, 416
MboII	GAAGA	3 cut(s)	7, 13, 422
MluCI	AATT	2 cut(s)	360, 634
MnlI	CCTC	4 cut(s)	29, 254, 388, 444
MseI	TTAA	2 cut(s)	231, 637
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	3 cut(s)	240, 318, 476
MspR9I	CCNGG	2 cut(s)	240, 318
MwoI	GCNNNNNNNGC	5 cut(s)	89, 111, 120, 224, 249
NciI	CCSGG	2 cut(s)	240, 318
NcoI	CCATGG	1 cut(s)	264
NlaIII	CATG	4 cut(s)	48, 123, 199, 268
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	199
PciI	ACATGT	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	210, 460, 601
PkrI	GCNGC	3 cut(s)	94, 220, 595
PscI	ACATGT	1 cut(s)	195
PspEI	GGTNACC	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	104, 166
PstI	CTGCAG	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	2 cut(s)	200, 631
RsaNI	GTAC	2 cut(s)	199, 630
SaqAI	TTAA	2 cut(s)	231, 637
SatI	GCNGC	3 cut(s)	93, 219, 594
Sau96I	GGNCC	2 cut(s)	104, 166
SbfI	CCTGCAGG	1 cut(s)	112
ScrFI	CCNGG	2 cut(s)	240, 318
SdaI	CCTGCAGG	1 cut(s)	112
SetI	ASST	7 cut(s)	66, 97, 141, 220, 282, 325, 393
SfcI	CTRYAG	1 cut(s)	108
SfiI	GGCCNNNNNGGCC	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
SpeI	ACTAGT	1 cut(s)	331
Sse8387I	CCTGCAGG	1 cut(s)	112
Sse9I	AATT	2 cut(s)	360, 634
SsiI	CCGC	3 cut(s)	291, 366, 479
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	238, 316
StyI	CCWWGG	4 cut(s)	100, 169, 253, 264
TaaI	ACNGT	3 cut(s)	145, 517, 540
TaiI	ACGT	2 cut(s)	66, 282
TaqI	TCGA	2 cut(s)	356, 380
TasI	AATT	2 cut(s)	360, 634
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	3 cut(s)	210, 460, 601
Tru1I	TTAA	2 cut(s)	231, 637
Tru9I	TTAA	2 cut(s)	231, 637
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	3 cut(s)	92, 218, 593
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	33, 361
TspRI	CASTG	1 cut(s)	543
XagI	CCTNNNNNAGG	1 cut(s)	410
XceI	RCATGY	1 cut(s)	199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.