Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009763

Physical Location & Seq

Genomic Coordinates Forward (+)

10360138 .. 10362217

Gene Structure 2080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1127800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAACAGCATGAGAAAGAAGGTGCAAGATGCTTCCTTGCCCTCTCAAAACAGCAAACTAATTCTTTTCTTGTTTACTTGGGAAACACTCTTGTTATCATTTCCCCTTTATTCTGATTCTTCTTCTAAGCCCCTATATACATACACGGCAGCAAAATCTTTGTCATTTAGAATTGCAAATTCAGTATTCCTTTTACGTTTCTACGCTCTCATGGCCGCGCCAATTGTAAACAAAGAGTACCTCCAGGAAATCGAGAAGGCTCGCAGAGACCTTCGTGCTCTTATCTACAGCAAGAACTGCGCTCCTATTATGCTTCGTGTAGCGTGGCATGATGCTGGAACATACGACGCTAGAACAAGGAATGGAATACCTGGAGGGCCTAATGGCTCTATCAGGAACAAGGTAGAGTTAAACCACAGTGCAAATAAGGGATTGGAAACTGCAGTTCAGATATGTGAAGAAGTGAAGGCCAAACACCCTAAAATCACATATGCTGACCTCTACCAGCTTGCAGGGGTTGTTGCTGTAGAGATCACCGGAGGTCCTTCCATTAACTTTGTTCCGGGTAGAAAGGACTCTAACCAATCTCCACCTGAAGGCCGCCTTCCAGATGCCAAACTTGGTGCATCGCATTTAAGAGAAGTTTTCTACCGCATGGGCCTGTCCGACAAAGACATTGTGGTATTATCGGGAGGCCATACATTGGGAAAGGCAAATAAGAGATCTGGCTTTGAAGGCCCCTGGACAAAGGAGCCTTGGAAATTCGACAACTCATACTTCGTGGAACTACTGGAAGGGCAAACGGAGGGACTCTTGCAACTTCCGACGGACAAGGCGTTGGTGGAGGATCCTGTTTTCCGTCGCTATGTTGAGCTATATGCTAAGGACAATGATGCATTCTTCAGGGATTATGCAGTATCACACAAGAAACTATCAGAACTAGGCTTCACTCAACCTTCTTTGGCTCCGAAAGTCCTAGTTACTCTTACGATTGCTGCAATAATCGCTGCATTGGTGTACGATAAATGCAAAAGTTTCGTCCAAGACATGAAGACTCTCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

355

Amino Acids

39.55

Weight (kDa)

9.22

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	88 - 296	1.2e-46	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35970 AT4G35970
fragaria_vesca	FvH4_1g11490
malus_domestica	MD02G1127800.v1.1 MD15G1243000.v1.1
prunus_persica	Prupe.7G171100_v2.0.a1 Prupe.7G171100_v2.0.a1
pyrus_communis	pycom02g09990 pycom15g21410
rosa_chinensis	RchiOBHm_Chr2g0099111
rosa_laevigata	RLG00000016849
rosa_multiflora	Rmu_sc0009113.1_g000007 Rmu_sc0012098.1_g000003 Rmu_sc0034643.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143430
rosa_rugosa	Rorug02G0076800
rosa_samantha	Rh2AG125900 Rh2BG129200 Rh2CG130200 Rh2DG130600
rosa_wichuraiana	Rw2G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	703
AccII	CGCG	1 cut(s)	218
AciI	CCGC	3 cut(s)	216, 601, 652
AclWI	GGATC	2 cut(s)	842, 855
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	178, 761
AcuI	CTGAAG	2 cut(s)	615, 886
AfaI	GTAC	2 cut(s)	239, 1019
AfiI	CCNNNNNNNGG	2 cut(s)	596, 703
AgsI	TTSAA	1 cut(s)	734
AjnI	CCWGG	3 cut(s)	243, 370, 740
AluBI	AGCT	2 cut(s)	508, 874
AluI	AGCT	2 cut(s)	508, 874
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	842, 855
AoxI	GGCC	7 cut(s)	213, 377, 468, 598, 658, 694, 736
ApeKI	GCWGC	3 cut(s)	149, 995, 1007
ApoI	RAATTY	2 cut(s)	178, 761
ArsI	GACNNNNNNTTYG	4 cut(s)	146, 178, 1023, 1055
AspLEI	GCGC	2 cut(s)	220, 302
AspS9I	GGNCC	4 cut(s)	377, 542, 658, 737
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	1 cut(s)	526
AvaII	GGWCC	1 cut(s)	542
BamHI	GGATCC	1 cut(s)	847
BbsI	GAAGAC	1 cut(s)	1058
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	3 cut(s)	161, 982, 994
BceAI	ACGGC	1 cut(s)	162
BcgI	CGANNNNNNTGC	2 cut(s)	1018, 1052
BciT130I	CCWGG	3 cut(s)	245, 372, 742
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	3 cut(s)	351, 941, 977
BfmI	CTRYAG	3 cut(s)	286, 441, 525
BglII	AGATCT	1 cut(s)	722
BisI	GCNGC	5 cut(s)	150, 216, 601, 996, 1008
BlsI	GCNGC	5 cut(s)	151, 217, 602, 997, 1009
Bme1390I	CCNGG	4 cut(s)	245, 372, 564, 742
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	4 cut(s)	377, 542, 658, 737
BmiI	GGNNCC	4 cut(s)	739, 753, 849, 966
BmrFI	CCNGG	4 cut(s)	245, 372, 564, 742
BmsI	GCATC	5 cut(s)	19, 322, 601, 635, 883
BpiI	GAAGAC	1 cut(s)	1058
BpmI	CTGGAG	2 cut(s)	227, 393
Bpu10I	CCTNAGC	1 cut(s)	882
BpuMI	CCSGG	1 cut(s)	564
BsaI	GGTCTC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	740, 755
BsaWI	WCCGGW	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	2 cut(s)	596, 703
Bse1I	ACTGG	1 cut(s)	795
BseBI	CCWGG	3 cut(s)	245, 372, 742
BseDI	CCNNGG	2 cut(s)	740, 755
BseLI	CCNNNNNNNGG	2 cut(s)	596, 703
BseNI	ACTGG	1 cut(s)	795
BseXI	GCAGC	3 cut(s)	161, 982, 994
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	7 cut(s)	215, 379, 470, 600, 660, 696, 738
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	537, 563
BslFI	GGGAC	1 cut(s)	822
BslI	CCNNNNNNNGG	2 cut(s)	596, 703
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	822
BsmI	GAATGC	1 cut(s)	896
BsnI	GGCC	7 cut(s)	215, 379, 470, 600, 660, 696, 738
Bso31I	GGTCTC	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	531, 722, 847
BspACI	CCGC	3 cut(s)	216, 601, 652
BspANI	GGCC	7 cut(s)	215, 379, 470, 600, 660, 696, 738
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	4 cut(s)	739, 753, 849, 966
BspMAI	CTGCAG	1 cut(s)	445
BspPI	GGATC	2 cut(s)	842, 855
BspTNI	GGTCTC	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	795
BssECI	CCNNGG	2 cut(s)	740, 755
BssMI	GATC	3 cut(s)	531, 722, 847
BssT1I	CCWWGG	1 cut(s)	755
Bst2UI	CCWGG	3 cut(s)	245, 372, 742
Bst4CI	ACNGT	1 cut(s)	419
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	262, 510
BstDEI	CTNAG	2 cut(s)	126, 882
BstFNI	CGCG	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	220, 302
BstKTI	GATC	3 cut(s)	534, 725, 850
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	3 cut(s)	531, 722, 847
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 297, 735, 1004
BstNI	CCWGG	3 cut(s)	245, 372, 742
BstSCI	CCNGG	4 cut(s)	243, 370, 562, 740
BstSFI	CTRYAG	3 cut(s)	286, 441, 525
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	3 cut(s)	161, 982, 994
BstV2I	GAAGAC	1 cut(s)	1058
BstX2I	RGATCY	2 cut(s)	722, 847
BstYI	RGATCY	2 cut(s)	722, 847
BsuRI	GGCC	7 cut(s)	215, 379, 470, 600, 660, 696, 738
BtgZI	GCGATG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	262, 510
CfoI	GCGC	2 cut(s)	220, 302
Cfr13I	GGNCC	4 cut(s)	377, 542, 658, 737
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	2 cut(s)	238, 1018
CviAII	CATG	5 cut(s)	10, 211, 329, 655, 1048
CviQI	GTAC	2 cut(s)	238, 1018
DdeI	CTNAG	2 cut(s)	126, 882
DpnI	GATC	3 cut(s)	533, 724, 849
DpnII	GATC	3 cut(s)	531, 722, 847
EaeI	YGGCCR	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	755
Eco31I	GGTCTC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	2 cut(s)	615, 886
EcoO109I	RGGNCCY	3 cut(s)	377, 542, 737
EcoRII	CCWGG	3 cut(s)	243, 370, 740
EcoT14I	CCWWGG	1 cut(s)	755
EcoT22I	ATGCAT	1 cut(s)	898
ErhI	CCWWGG	1 cut(s)	755
FaeI	CATG	5 cut(s)	13, 214, 332, 658, 1051
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	1 cut(s)	822
FatI	CATG	5 cut(s)	9, 210, 328, 654, 1047
FauNDI	CATATG	1 cut(s)	490
Fnu4HI	GCNGC	5 cut(s)	150, 216, 601, 996, 1008
Fsp4HI	GCNGC	5 cut(s)	150, 216, 601, 996, 1008
FspBI	CTAG	3 cut(s)	351, 941, 977
GlaI	GCGC	2 cut(s)	219, 301
GluI	GCNGC	5 cut(s)	150, 216, 601, 996, 1008
GsuI	CTGGAG	2 cut(s)	227, 393
HaeIII	GGCC	7 cut(s)	215, 379, 470, 600, 660, 696, 738
HapII	CCGG	2 cut(s)	537, 563
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	2 cut(s)	220, 302
Hin1II	CATG	5 cut(s)	13, 214, 332, 658, 1051
Hin6I	GCGC	2 cut(s)	218, 300
HinP1I	GCGC	2 cut(s)	218, 300
HinfI	GANTC	4 cut(s)	116, 575, 810, 1054
HpaII	CCGG	2 cut(s)	537, 563
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	3 cut(s)	75, 229, 1018
Hpy188I	TCNGA	6 cut(s)	115, 450, 667, 825, 937, 969
Hpy188III	TCNNGA	4 cut(s)	253, 394, 608, 690
Hpy8I	GTNNAC	3 cut(s)	75, 229, 1018
Hpy99I	CGWCG	3 cut(s)	350, 829, 864
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 297, 735, 1004
HpyF3I	CTNAG	2 cut(s)	126, 882
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	5 cut(s)	13, 214, 332, 658, 1051
HspAI	GCGC	2 cut(s)	218, 300
Kzo9I	GATC	3 cut(s)	531, 722, 847
LmnI	GCTCC	3 cut(s)	307, 751, 970
Lsp1109I	GCAGC	3 cut(s)	161, 982, 994
LweI	GCATC	5 cut(s)	19, 322, 601, 635, 883
MaeI	CTAG	3 cut(s)	351, 941, 977
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	979
MalI	GATC	3 cut(s)	533, 724, 849
MboI	GATC	3 cut(s)	531, 722, 847
MboII	GAAGA	5 cut(s)	111, 114, 470, 892, 1063
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	2 cut(s)	722, 847
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	5 cut(s)	60, 171, 178, 222, 761
MlyI	GAGTC	3 cut(s)	569, 804, 1048
MmeI	TCCRAC	2 cut(s)	690, 848
MnlI	CCTC	8 cut(s)	52, 251, 368, 509, 533, 686, 799, 838
Mph1103I	ATGCAT	1 cut(s)	898
MseI	TTAA	3 cut(s)	410, 552, 635
MspI	CCGG	2 cut(s)	537, 563
MspR9I	CCNGG	4 cut(s)	245, 372, 564, 742
MunI	CAATTG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	896
MvaI	CCWGG	3 cut(s)	245, 372, 742
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	4 cut(s)	212, 297, 735, 1004
NciI	CCSGG	1 cut(s)	564
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	3 cut(s)	531, 722, 847
NlaIII	CATG	5 cut(s)	13, 214, 332, 658, 1051
NlaIV	GGNNCC	4 cut(s)	739, 753, 849, 966
NsiI	ATGCAT	1 cut(s)	898
PcsI	WCGNNNNNNNCGW	1 cut(s)	833
PctI	GAATGC	1 cut(s)	896
PfeI	GAWTC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	703
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	5 cut(s)	151, 217, 602, 997, 1009
PleI	GAGTC	3 cut(s)	569, 804, 1048
PpsI	GAGTC	3 cut(s)	569, 804, 1048
PpuMI	RGGWCCY	1 cut(s)	542
Psp5II	RGGWCCY	1 cut(s)	542
Psp6I	CCWGG	3 cut(s)	243, 370, 740
PspGI	CCWGG	3 cut(s)	243, 370, 740
PspN4I	GGNNCC	4 cut(s)	739, 753, 849, 966
PspPI	GGNCC	4 cut(s)	377, 542, 658, 737
PspPPI	RGGWCCY	1 cut(s)	542
PstI	CTGCAG	1 cut(s)	445
PsuI	RGATCY	2 cut(s)	722, 847
RsaI	GTAC	2 cut(s)	239, 1019
RsaNI	GTAC	2 cut(s)	238, 1018
SaqAI	TTAA	3 cut(s)	410, 552, 635
SatI	GCNGC	5 cut(s)	150, 216, 601, 996, 1008
Sau3AI	GATC	3 cut(s)	531, 722, 847
Sau96I	GGNCC	4 cut(s)	377, 542, 658, 737
SchI	GAGTC	3 cut(s)	569, 804, 1048
ScrFI	CCNGG	4 cut(s)	245, 372, 564, 742
SduI	GDGCHC	1 cut(s)	280
SfaNI	GCATC	5 cut(s)	19, 322, 601, 635, 883
SfcI	CTRYAG	3 cut(s)	286, 441, 525
SinI	GGWCC	1 cut(s)	542
Sse9I	AATT	5 cut(s)	60, 171, 178, 222, 761
SsiI	CCGC	3 cut(s)	216, 601, 652
SspMI	CTAG	3 cut(s)	351, 941, 977
StyD4I	CCNGG	4 cut(s)	243, 370, 562, 740
StyI	CCWWGG	1 cut(s)	755
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	252, 765
TasI	AATT	5 cut(s)	60, 171, 178, 222, 761
TauI	GCSGC	2 cut(s)	218, 603
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	3 cut(s)	410, 552, 635
Tru9I	TTAA	3 cut(s)	410, 552, 635
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	3 cut(s)	149, 995, 1007
TspDTI	ATGAA	2 cut(s)	17, 1064
TspGWI	ACGGA	3 cut(s)	818, 842, 848
TspRI	CASTG	1 cut(s)	424
Van91I	CCANNNNNTGG	1 cut(s)	703
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	2 cut(s)	178, 761
XspI	CTAG	3 cut(s)	351, 941, 977
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.