Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009763

Physical Location & Seq

Genomic Coordinates Forward (+)

9853437 .. 9855949

Gene Structure 2513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCTTCGTTTAGCGTGGCATGATGCTGGAACATATGATGCTTTTACAAAAACTGGAGGGCCTAATGGCTCAATCAGGAATGAGGAAGAGTTAAAACATAGGGCAAATAATGGACTGAAAATCGCGGTTGACTTATGTGAAGAAGTGAAGGCCAAGCACCCAAAAATTACATATGCTGACCTCTACCAGCTTGCTGGGGTTGTTGCAATAGAGGTCACTGGAGGTCCACCTATTGACTTTGTTCCGGGTAGAAAGGACTCAAAGCAGTCACCACCAGAAGGGCGCCTTCCAGATGCCAAACTCGGTGCATCACATTTAAGGGATACTTTCTACCGTATGGGACTGTCTGACCAGGACATTGTGGCGCTATCAGGAGGCCACACATTGGGAAGGGCACATCAGGAGAGATCAGGCTTTGATGGACCCTGGACAAAGGAGCCTGCGAAGTTTGACAACTCATACTTTGTGGAACTATTGAAAGGGGAGTCAGAGGGACTGCTGAAACTTCCCACAGACAAGGCTCTAGTGGAGGATCCTGGGTTCCATCACTATGTCGAACTATATGCAAACGATAAGGATGCATTCTTCAGAGACTATGCAGTATCACACAAGAAACTATCAGAACTTGGCTTTAGCCCACCTTCTTCAGGTCAGAAGGTAGGACTTGCTCTTAGCATTGCTGCTGTCTTAGTTCTGGCAGTTGTGTGGGAGTTGACAGACCCGTTTCTCATATGGAAACAATACAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

250

Amino Acids

27.58

Weight (kDa)

5.99

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	1 - 191	2.7e-46	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35970 AT4G35970
fragaria_vesca	FvH4_1g11490
malus_domestica	MD02G1127800.v1.1 MD15G1243000.v1.1
prunus_persica	Prupe.7G171100_v2.0.a1 Prupe.7G171100_v2.0.a1
pyrus_communis	pycom02g09990 pycom15g21410
rosa_chinensis	RchiOBHm_Chr2g0099111
rosa_laevigata	RLG00000016849
rosa_multiflora	Rmu_sc0009113.1_g000007 Rmu_sc0012098.1_g000003 Rmu_sc0034643.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143430
rosa_rugosa	Rorug02G0076800
rosa_samantha	Rh2AG125900 Rh2BG129200 Rh2CG130200 Rh2DG130600
rosa_wichuraiana	Rw2G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	282
AccB7I	CCANNNNNTGG	1 cut(s)	385
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	527, 540
AcuI	CTGAAG	2 cut(s)	571, 630
AcyI	GRCGYC	1 cut(s)	283
AfiI	CCNNNNNNNGG	3 cut(s)	278, 385, 647
AgsI	TTSAA	1 cut(s)	478
AjnI	CCWGG	3 cut(s)	351, 425, 535
AloI	GAACNNNNNNTCC	2 cut(s)	524, 556
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	585
AlwI	GGATC	2 cut(s)	527, 540
AoxI	GGCC	3 cut(s)	59, 150, 376
ApeKI	GCWGC	1 cut(s)	680
AspLEI	GCGC	2 cut(s)	285, 367
AspS9I	GGNCC	3 cut(s)	59, 224, 422
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	224, 422
BaeGI	GKGCMC	1 cut(s)	397
BamHI	GGATCC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	2 cut(s)	413, 552
BcgI	CGANNNNNNTGC	4 cut(s)	545, 560, 579, 594
BciT130I	CCWGG	3 cut(s)	353, 427, 537
BciVI	GTATCC	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	585
BfaI	CTAG	1 cut(s)	524
BfoI	RGCGCY	2 cut(s)	286, 368
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	1 cut(s)	681
BlsI	GCNGC	1 cut(s)	682
Bme1390I	CCNGG	4 cut(s)	246, 353, 427, 537
Bme18I	GGWCC	2 cut(s)	224, 422
BmgT120I	GGNCC	3 cut(s)	59, 224, 422
BmiI	GGNNCC	5 cut(s)	284, 424, 438, 534, 542
BmrFI	CCNGG	4 cut(s)	246, 353, 427, 537
BmsI	GCATC	5 cut(s)	13, 28, 283, 317, 568
BpmI	CTGGAG	2 cut(s)	75, 240
BpuMI	CCSGG	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	425, 536
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 385, 647
Bse1I	ACTGG	2 cut(s)	58, 223
Bse3DI	GCAATG	1 cut(s)	675
BseBI	CCWGG	3 cut(s)	353, 427, 537
BseDI	CCNNGG	2 cut(s)	425, 536
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	3 cut(s)	278, 385, 647
BseMI	GCAATG	1 cut(s)	675
BseNI	ACTGG	2 cut(s)	58, 223
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	667
BseYI	CCCAGC	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	3 cut(s)	61, 152, 378
BshNI	GGYRCC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	2 cut(s)	354, 507
BslI	CCNNNNNNNGG	3 cut(s)	278, 385, 647
BsmAI	GTCTC	1 cut(s)	585
BsmFI	GGGAC	2 cut(s)	354, 507
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	3 cut(s)	61, 152, 378
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	407, 532
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	3 cut(s)	61, 152, 378
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	5 cut(s)	284, 424, 438, 534, 542
BspPI	GGATC	2 cut(s)	527, 540
BspT107I	GGYRCC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	2 cut(s)	58, 223
BssECI	CCNNGG	2 cut(s)	425, 536
BssMI	GATC	2 cut(s)	407, 532
BssNI	GRCGYC	1 cut(s)	283
Bst2UI	CCWGG	3 cut(s)	353, 427, 537
Bst4CI	ACNGT	2 cut(s)	335, 345
Bst6I	CTCTTC	1 cut(s)	81
BstACI	GRCGYC	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	192, 441
BstDEI	CTNAG	2 cut(s)	671, 688
BstENI	CCTNNNNNAGG	1 cut(s)	645
BstF5I	GGATG	1 cut(s)	583
BstFNI	CGCG	1 cut(s)	125
BstH2I	RGCGCY	2 cut(s)	286, 368
BstHHI	GCGC	2 cut(s)	285, 367
BstKTI	GATC	2 cut(s)	410, 535
BstMAI	GTCTC	1 cut(s)	585
BstMBI	GATC	2 cut(s)	407, 532
BstNI	CCWGG	3 cut(s)	353, 427, 537
BstSCI	CCNGG	4 cut(s)	244, 351, 425, 535
BstSLI	GKGCMC	1 cut(s)	397
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	667
BstX2I	RGATCY	1 cut(s)	532
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	532
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	61, 152, 378
BtsCI	GGATG	1 cut(s)	583
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	192, 441
CfoI	GCGC	2 cut(s)	285, 367
Cfr13I	GGNCC	3 cut(s)	59, 224, 422
CviAII	CATG	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	671, 688
DinI	GGCGCC	1 cut(s)	284
DpnI	GATC	2 cut(s)	409, 534
DpnII	GATC	2 cut(s)	407, 532
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	224, 422
Eco57I	CTGAAG	2 cut(s)	571, 630
EcoNI	CCTNNNNNAGG	1 cut(s)	645
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	3 cut(s)	351, 425, 535
EcoT22I	ATGCAT	1 cut(s)	583
EgeI	GGCGCC	1 cut(s)	284
EheI	GGCGCC	1 cut(s)	284
FaeI	CATG	1 cut(s)	23
FalI	AAGNNNNNCTT	4 cut(s)	270, 302, 310, 342
FaqI	GGGAC	2 cut(s)	354, 507
FatI	CATG	1 cut(s)	19
FauNDI	CATATG	3 cut(s)	34, 172, 731
Fnu4HI	GCNGC	1 cut(s)	681
FokI	GGATG	1 cut(s)	590
Fsp4HI	GCNGC	1 cut(s)	681
FspBI	CTAG	1 cut(s)	524
GlaI	GCGC	2 cut(s)	284, 366
GluI	GCNGC	1 cut(s)	681
GsaI	CCCAGC	1 cut(s)	198
GsuI	CTGGAG	2 cut(s)	75, 240
HaeII	RGCGCY	2 cut(s)	286, 368
HaeIII	GGCC	3 cut(s)	61, 152, 378
HapII	CCGG	1 cut(s)	245
HhaI	GCGC	2 cut(s)	285, 367
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	2 cut(s)	283, 365
HinP1I	GCGC	2 cut(s)	283, 365
HincII	GTYRAC	2 cut(s)	130, 714
HindII	GTYRAC	2 cut(s)	130, 714
HinfI	GANTC	2 cut(s)	257, 485
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	261
Hpy166II	GTNNAC	3 cut(s)	130, 227, 714
Hpy188I	TCNGA	5 cut(s)	349, 490, 590, 622, 654
Hpy188III	TCNNGA	4 cut(s)	76, 290, 372, 401
Hpy8I	GTNNAC	3 cut(s)	130, 227, 714
HpyAV	CCTTC	6 cut(s)	142, 272, 296, 384, 649, 651
HpyCH4III	ACNGT	2 cut(s)	335, 345
HpyCH4V	TGCA	5 cut(s)	206, 308, 566, 581, 599
HpyF3I	CTNAG	2 cut(s)	671, 688
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	2 cut(s)	283, 365
KasI	GGCGCC	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	407, 532
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	5 cut(s)	13, 28, 283, 317, 568
MaeI	CTAG	1 cut(s)	524
MaeIII	GTNAC	2 cut(s)	214, 267
MalI	GATC	2 cut(s)	409, 534
MboI	GATC	2 cut(s)	407, 532
MboII	GAAGA	4 cut(s)	98, 152, 577, 636
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	2 cut(s)	165, 748
Mly113I	GGCGCC	1 cut(s)	283
MlyI	GAGTC	2 cut(s)	251, 494
MnlI	CCTC	8 cut(s)	50, 76, 191, 205, 215, 368, 484, 523
Mph1103I	ATGCAT	1 cut(s)	583
MseI	TTAA	2 cut(s)	92, 317
MslI	CAYNNNNRTG	1 cut(s)	549
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	4 cut(s)	246, 353, 427, 537
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	3 cut(s)	353, 427, 537
MvnI	CGCG	1 cut(s)	125
NarI	GGCGCC	1 cut(s)	283
NciI	CCSGG	1 cut(s)	246
NdeI	CATATG	3 cut(s)	34, 172, 731
NdeII	GATC	2 cut(s)	407, 532
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	5 cut(s)	284, 424, 438, 534, 542
NmuCI	GTSAC	2 cut(s)	214, 267
NsiI	ATGCAT	1 cut(s)	583
PctI	GAATGC	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	682
PleI	GAGTC	2 cut(s)	251, 493
PluTI	GGCGCC	1 cut(s)	286
PpsI	GAGTC	2 cut(s)	251, 493
Psp6I	CCWGG	3 cut(s)	351, 425, 535
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	3 cut(s)	351, 425, 535
PspN4I	GGNNCC	5 cut(s)	284, 424, 438, 534, 542
PspPI	GGNCC	3 cut(s)	59, 224, 422
PsuI	RGATCY	1 cut(s)	532
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	2 cut(s)	92, 317
SatI	GCNGC	1 cut(s)	681
Sau3AI	GATC	2 cut(s)	407, 532
Sau96I	GGNCC	3 cut(s)	59, 224, 422
SchI	GAGTC	2 cut(s)	251, 494
ScrFI	CCNGG	4 cut(s)	246, 353, 427, 537
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	8 cut(s)	183, 192, 216, 226, 232, 643, 652, 660
SfaNI	GCATC	5 cut(s)	13, 28, 283, 317, 568
SfoI	GGCGCC	1 cut(s)	284
SinI	GGWCC	2 cut(s)	224, 422
SmiMI	CAYNNNNRTG	1 cut(s)	549
Sse9I	AATT	2 cut(s)	165, 748
SsiI	CCGC	1 cut(s)	125
SspDI	GGCGCC	1 cut(s)	282
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	4 cut(s)	244, 351, 425, 535
TaaI	ACNGT	2 cut(s)	335, 345
TaqI	TCGA	1 cut(s)	555
TasI	AATT	2 cut(s)	165, 748
Tru1I	TTAA	2 cut(s)	92, 317
Tru9I	TTAA	2 cut(s)	92, 317
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	2 cut(s)	214, 267
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	2 cut(s)	214, 267
TspRI	CASTG	1 cut(s)	223
Van91I	CCANNNNNTGG	1 cut(s)	385
VpaK11BI	GGWCC	2 cut(s)	224, 422
XagI	CCTNNNNNAGG	1 cut(s)	645
XspI	CTAG	1 cut(s)	524
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.