Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005637

Physical Location & Seq

Genomic Coordinates Reverse (-)

17239911 .. 17242168

Gene Structure 2258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGATACTTCTTCTGCTTCTTCTCAGTCTGTTCAAGGTAGTGAGAGGTTGGCTTTTAAACCAGAAGGCTATAACTTTTGGGAATGGAGAGGTCACAAGATTCATTATGTTGTTCAAGGAGAAGGCTCGCCTCTAGTTCTTATTCATGGTTTTGGTGCTTCTGTCTTTCATTGGAGGTATAACATTCCTGAATTGGCTAAGAAATACAAGGTTTACGCCTTGGACTTACTCGGTTTCGGATGGAGTGACAAAGCTCTCATAGAGTATGATGCCATGGTTTGGACAGATCAAGTTATTGATTTCATGAAAGAGGTAGTGAAAGAACCAGCTGTTGTCGTTGGAAACAGCCTTGGGGGATTTACGGCATTGTCAGTTGCGGTTGGATTACCCGAGCAAGTCACGGGAGTTGCACTTCTGAACTCTGCGGGACAATTTGCAGCCGAGAGTAGAAAACGAGAGGAAGCTGATGAAACTGTGATAACCAAGTTTATAGTTAAGCCGCTAAAAGAGATTTTCCAACGTGTGGTTCTTGGGTTCTTGTTCTGGCAAGCCAAGCAACCTTCTCGAATCGAATCTGTCTTAAAGAGTGTGTACATAGACTCTACTAATGTCGATGACTACCTCGTCGAATCCATTTCAAAACCTGCAACAGATCCAAATGCTGGAGAAGTATACTACAGATTGATGACAAGGTTCTTAACAAACCAGAGTAGATACACTCTAGATAGTGTTCTAAGTAAGATGACTTGTCCGCTTCTGTTGGTTTGGGGAGATCTTGATCCGTGGGTCGGTCCAGCTAAAGCCGAGAAAATCAAAGCATTTTACTCGAACTCATCGCTCGTTCACTTACAAGCAGGGCATTGTCCTCATGATGAAGTCCCGGAAGCTGTAAACAAGGCTTTGTTGGATTGGTTGTCCATTAATATTGCTTCAAAGCCAGCTTCTCCTATAGTCTTGGAGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

321

Amino Acids

35.78

Weight (kDa)

5.7

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	101 - 349	1.7e-21	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	102 - 356	8.9e-23	Alpha/beta hydrolase family
Hydrolase_4	PF12146	102 - 333	1.9e-13	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36530 AT4G36530
fragaria_vesca	FvH4_1g13000 FvH4_1g13000 FvH4_1g13000
malus_domestica	MD15G1258200.v1.1
prunus_persica	Prupe.7G157100_v2.0.a1
pyrus_communis	pycom02g11440 pycom15g22600
rosa_chinensis	RchiOBHm_Chr2g0101081 RchiOBHm_Chr4g0423241 RchiOBHm_Chr6g0260581
rosa_laevigata	RLG00000017050
rosa_multiflora	Rmu_sc0007698.1_g000013
rosa_roxburghii	Rroxscaffold_2G00095650 Rroxscaffold_2G00141570 Rroxscaffold_5G00364280
rosa_rugosa	Rorug02G0097000
rosa_samantha	Rh2AG143000 Rh2BG148100 Rh2CG149600 Rh2DG148600 Rh5DG463100 Rh6CG159800
rosa_wichuraiana	Rw2G003750 Rw2G011270 Rw3G026160 Rw7G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	623
Acc36I	ACCTGC	1 cut(s)	652
AccB7I	CCANNNNNTGG	3 cut(s)	279, 523, 662
AccI	GTMKAC	1 cut(s)	672
AciI	CCGC	4 cut(s)	377, 425, 500, 752
AclWI	GGATC	2 cut(s)	647, 773
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	4 cut(s)	279, 523, 662, 788
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	4 cut(s)	35, 116, 639, 933
AjuI	GAANNNNNNNTTGG	2 cut(s)	510, 542
AluBI	AGCT	6 cut(s)	254, 329, 464, 797, 887, 941
AluI	AGCT	6 cut(s)	254, 329, 464, 797, 887, 941
Alw26I	GTCTC	1 cut(s)	953
AlwI	GGATC	2 cut(s)	647, 773
Ama87I	CYCGRG	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	437
AseI	ATTAAT	1 cut(s)	921
AspS9I	GGNCC	1 cut(s)	791
AsuC2I	CCSGG	1 cut(s)	881
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	791
BbvI	GCAGC	1 cut(s)	449
BccI	CCATC	1 cut(s)	234
BceAI	ACGGC	1 cut(s)	378
BcgI	CGANNNNNNTGC	4 cut(s)	545, 579, 807, 841
BcnI	CCSGG	1 cut(s)	881
BcoDI	GTCTC	1 cut(s)	953
BfaI	CTAG	2 cut(s)	134, 722
BfmI	CTRYAG	2 cut(s)	676, 948
BfuAI	ACCTGC	1 cut(s)	652
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	2 cut(s)	438, 500
BlsI	GCNGC	2 cut(s)	439, 501
Bme1390I	CCNGG	1 cut(s)	881
Bme18I	GGWCC	1 cut(s)	791
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	791
BmrFI	CCNGG	1 cut(s)	881
BmsI	GCATC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	684
BpuMI	CCSGG	1 cut(s)	881
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	4 cut(s)	219, 273, 349, 782
Bsc4I	CCNNNNNNNGG	4 cut(s)	279, 523, 662, 788
Bse8I	GATNNNNATC	1 cut(s)	777
BseDI	CCNNGG	4 cut(s)	219, 273, 349, 782
BseGI	GGATG	1 cut(s)	245
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	4 cut(s)	279, 523, 662, 788
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	881
BslFI	GGGAC	2 cut(s)	441, 863
BslI	CCNNNNNNNGG	4 cut(s)	279, 523, 662, 788
BsmAI	GTCTC	1 cut(s)	953
BsmBI	CGTCTC	1 cut(s)	953
BsmFI	GGGAC	2 cut(s)	441, 863
BsoBI	CYCGRG	1 cut(s)	389
Bsp1407I	TGTACA	1 cut(s)	591
Bsp143I	GATC	4 cut(s)	286, 652, 772, 778
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	4 cut(s)	377, 425, 500, 752
BspCNI	CTCAG	1 cut(s)	37
BspHI	TCATGA	2 cut(s)	303, 868
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	2 cut(s)	647, 773
BsrGI	TGTACA	1 cut(s)	591
BssECI	CCNNGG	4 cut(s)	219, 273, 349, 782
BssMI	GATC	4 cut(s)	286, 652, 772, 778
BssNAI	GTATAC	1 cut(s)	673
BssT1I	CCWWGG	3 cut(s)	219, 273, 349
Bst1107I	GTATAC	1 cut(s)	673
Bst4CI	ACNGT	1 cut(s)	475
BstAUI	TGTACA	1 cut(s)	591
BstC8I	GCNNGC	3 cut(s)	128, 549, 939
BstDEI	CTNAG	3 cut(s)	24, 198, 734
BstDSI	CCRYGG	2 cut(s)	273, 782
BstF5I	GGATG	1 cut(s)	245
BstKTI	GATC	4 cut(s)	289, 655, 775, 781
BstMAI	GTCTC	1 cut(s)	953
BstMBI	GATC	4 cut(s)	286, 652, 772, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	879
BstSFI	CTRYAG	2 cut(s)	676, 948
BstV1I	GCAGC	1 cut(s)	449
BstX2I	RGATCY	2 cut(s)	652, 772
BstYI	RGATCY	2 cut(s)	652, 772
BstZ17I	GTATAC	1 cut(s)	673
BtgI	CCRYGG	2 cut(s)	273, 782
BtgZI	GCGATG	1 cut(s)	819
BtsCI	GGATG	1 cut(s)	245
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	3 cut(s)	128, 549, 939
CciI	TCATGA	2 cut(s)	303, 868
Cfr13I	GGNCC	1 cut(s)	791
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	4 cut(s)	146, 274, 304, 869
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	3 cut(s)	24, 198, 734
DpnI	GATC	4 cut(s)	288, 654, 774, 780
DpnII	GATC	4 cut(s)	286, 652, 772, 778
DraI	TTTAAA	1 cut(s)	58
DrdI	GACNNNNNNGTC	1 cut(s)	623
DseDI	GACNNNNNNGTC	1 cut(s)	623
Eco130I	CCWWGG	3 cut(s)	219, 273, 349
Eco47I	GGWCC	1 cut(s)	791
Eco88I	CYCGRG	1 cut(s)	389
EcoT14I	CCWWGG	3 cut(s)	219, 273, 349
ErhI	CCWWGG	3 cut(s)	219, 273, 349
Esp3I	CGTCTC	1 cut(s)	953
FaeI	CATG	4 cut(s)	149, 277, 307, 872
FaqI	GGGAC	2 cut(s)	441, 863
FatI	CATG	4 cut(s)	145, 273, 303, 868
FauI	CCCGC	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	438, 500
FokI	GGATG	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	438, 500
FspBI	CTAG	2 cut(s)	134, 722
GluI	GCNGC	2 cut(s)	438, 500
GsuI	CTGGAG	1 cut(s)	684
HapII	CCGG	1 cut(s)	881
Hin1II	CATG	4 cut(s)	149, 277, 307, 872
HinfI	GANTC	5 cut(s)	100, 567, 572, 599, 629
HpaII	CCGG	1 cut(s)	881
Hpy166II	GTNNAC	5 cut(s)	214, 592, 673, 844, 892
Hpy188I	TCNGA	2 cut(s)	239, 417
Hpy188III	TCNNGA	6 cut(s)	188, 304, 564, 722, 776, 869
Hpy8I	GTNNAC	5 cut(s)	214, 592, 673, 844, 892
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	3 cut(s)	59, 116, 570
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4IV	ACGT	2 cut(s)	520, 962
HpyCH4V	TGCA	3 cut(s)	410, 437, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	3 cut(s)	24, 198, 734
HpySE526I	ACGT	2 cut(s)	520, 962
Hsp92II	CATG	4 cut(s)	149, 277, 307, 872
Kzo9I	GATC	4 cut(s)	286, 652, 772, 778
Lsp1109I	GCAGC	1 cut(s)	449
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	2 cut(s)	134, 722
MaeII	ACGT	2 cut(s)	520, 962
MaeIII	GTNAC	3 cut(s)	92, 245, 397
MalI	GATC	4 cut(s)	288, 654, 774, 780
MboI	GATC	4 cut(s)	286, 652, 772, 778
MboII	GAAGA	2 cut(s)	3, 12
MflI	RGATCY	2 cut(s)	652, 772
MluCI	AATT	2 cut(s)	191, 431
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	4 cut(s)	319, 361, 541, 885
MnlI	CCTC	8 cut(s)	39, 83, 141, 168, 304, 451, 632, 876
MseI	TTAA	5 cut(s)	57, 495, 581, 698, 921
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	881
MspR9I	CCNGG	1 cut(s)	881
MwoI	GCNNNNNNNGC	1 cut(s)	553
NciI	CCSGG	1 cut(s)	881
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	4 cut(s)	286, 652, 772, 778
NlaIII	CATG	4 cut(s)	149, 277, 307, 872
NmeAIII	GCCGAG	2 cut(s)	466, 829
NmuCI	GTSAC	3 cut(s)	92, 245, 397
PagI	TCATGA	2 cut(s)	303, 868
PfeI	GAWTC	4 cut(s)	100, 567, 572, 629
PflMI	CCANNNNNTGG	3 cut(s)	279, 523, 662
PfoI	TCCNGGA	1 cut(s)	879
PkrI	GCNGC	2 cut(s)	439, 501
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
PshBI	ATTAAT	1 cut(s)	921
PspPI	GGNCC	1 cut(s)	791
PsuI	RGATCY	2 cut(s)	652, 772
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
SaqAI	TTAA	5 cut(s)	57, 495, 581, 698, 921
SatI	GCNGC	2 cut(s)	438, 500
Sau3AI	GATC	4 cut(s)	286, 652, 772, 778
Sau96I	GGNCC	1 cut(s)	791
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	1 cut(s)	881
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	2 cut(s)	676, 948
SinI	GGWCC	1 cut(s)	791
Sse9I	AATT	2 cut(s)	191, 431
SsiI	CCGC	4 cut(s)	377, 425, 500, 752
SspI	AATATT	1 cut(s)	925
SspMI	CTAG	2 cut(s)	134, 722
StyD4I	CCNGG	1 cut(s)	879
StyI	CCWWGG	3 cut(s)	219, 273, 349
TaaI	ACNGT	1 cut(s)	475
TaiI	ACGT	2 cut(s)	523, 965
TaqI	TCGA	5 cut(s)	565, 570, 612, 627, 827
TaqII	GACCGA	1 cut(s)	779
TasI	AATT	2 cut(s)	191, 431
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	1 cut(s)	502
TfiI	GAWTC	4 cut(s)	100, 567, 572, 629
Tru1I	TTAA	5 cut(s)	57, 495, 581, 698, 921
Tru9I	TTAA	5 cut(s)	57, 495, 581, 698, 921
TseFI	GTSAC	3 cut(s)	92, 245, 397
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	3 cut(s)	92, 245, 397
TspDTI	ATGAA	7 cut(s)	92, 134, 158, 292, 320, 483, 888
TspGWI	ACGGA	1 cut(s)	771
Van91I	CCANNNNNTGG	3 cut(s)	279, 523, 662
VpaK11BI	GGWCC	1 cut(s)	791
VspI	ATTAAT	1 cut(s)	921
XbaI	TCTAGA	1 cut(s)	721
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	2 cut(s)	134, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.