Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005637

Physical Location & Seq

Genomic Coordinates Forward (+)

3456042 .. 3460979

Gene Structure 4938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G003750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCTGACACCGGTGACAAGAAGCCTAATGCCAATGCCAAGGTGAAAGTCAAGCATGGAGGTGGTGGTGGTGGTGGTGAGTTTGCCTTGCTTTTCCGTTTCTCGGTTTTCAGGATGCTTGTGTATGAGTATGTTGACAACGGAAACCTGGAACAATGGCTTCATGGAGATGTCGGGCCTCTCAGCCCTCTGACATGGGAGAATTGCATGAATATAATGCTTGGGACAGCGAAAGGGTATAACATACTAGAGTTGGCTAAAAAATACAAGGTTTATGCTATAGACTTGTTGGGCTTCGGTTGGAGTGAAAAAGCACTGGTTGAATATGATGCCATGATTTGGAAAGATCAAGTAGTGGACTTCTTGAAGGAGATAGTGAAAGAACCAACAGTTTTGGTTGGAAATAGCCTAGGAGGTTTTACTGCTTTGGTTGCAGCAGTTGGATTGCCTGAGCAAGTAGTTGGTGTTGCACTATTGAATTCGGCAGGACAGTTTGGAAATGCAAATAGTGAACTTGAGAAGTCTGACGAGGAAACAGTCCTACAGAAGTTCATCATAAAGCCACTGAAGGAAGTTTTCCAGCGAGTAGTACTTGGATTTTTATTCTGGCAAGCAAAGCAGCCTGCTCGCATTGAATCCGTTTTAAAGAGTGTGTACAAAAATACCTCCAATGAGGATGACTATCTGGTGGATTCCATAACAATGCCAGCAGCTGACCCCAATGCCGGAGAAGTCTACTACAGGCTTCTCCTACAACAGTCACTAGTTGGTACCCAATTGATTACAGTATTCACACAACGGATAACCAAATATAGTTGTTACAAGGGAGATAATTTTACTTCAGTTGTGTGTTACTTACCTCAGACAACAAATATTAAGTTATATCCGTTGTCTGTTAGTAGTCTCAGACAACAAATAATGAGTTATATCCGTTGTGTGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

314

Amino Acids

34.94

Weight (kDa)

6.21

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	54 - 166	1.1e-10	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	85 - 204	3.1e-11	alpha/beta hydrolase fold
Hydrolase_4	PF12146	87 - 178	7.7e-07	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36530 AT4G36530
fragaria_vesca	FvH4_1g13000 FvH4_1g13000 FvH4_1g13000
malus_domestica	MD15G1258200.v1.1
prunus_persica	Prupe.7G157100_v2.0.a1
pyrus_communis	pycom02g11440 pycom15g22600
rosa_chinensis	RchiOBHm_Chr2g0101081 RchiOBHm_Chr4g0423241 RchiOBHm_Chr6g0260581
rosa_laevigata	RLG00000017050
rosa_multiflora	Rmu_sc0007698.1_g000013
rosa_roxburghii	Rroxscaffold_2G00095650 Rroxscaffold_2G00141570 Rroxscaffold_5G00364280
rosa_rugosa	Rorug02G0097000
rosa_samantha	Rh2AG143000 Rh2BG148100 Rh2CG149600 Rh2DG148600 Rh5DG463100 Rh6CG159800
rosa_wichuraiana	Rw2G003750 Rw2G011270 Rw3G026160 Rw7G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	770
AccB1I	GGYRCC	1 cut(s)	770
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	735
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	2 cut(s)	587, 825
AfaI	GTAC	3 cut(s)	591, 656, 772
AfiI	CCNNNNNNNGG	3 cut(s)	103, 339, 725
AgeI	ACCGGT	1 cut(s)	11
AgsI	TTSAA	4 cut(s)	323, 367, 478, 635
AhlI	ACTAGT	1 cut(s)	763
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	1 cut(s)	713
AluI	AGCT	1 cut(s)	713
Alw26I	GTCTC	1 cut(s)	908
AlwNI	CAGNNNCTG	1 cut(s)	713
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	3 cut(s)	434, 619, 710
ApoI	RAATTY	1 cut(s)	478
AsiGI	ACCGGT	1 cut(s)	11
Asp718I	GGTACC	1 cut(s)	770
AspA2I	CCTAGG	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	3 cut(s)	26, 55, 89
AvrII	CCTAGG	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	770
BbvI	GCAGC	3 cut(s)	446, 631, 722
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	908
BcuI	ACTAGT	1 cut(s)	763
BfaI	CTAG	3 cut(s)	248, 410, 764
BfmI	CTRYAG	3 cut(s)	279, 542, 739
BisI	GCNGC	3 cut(s)	435, 620, 711
BlnI	CCTAGG	1 cut(s)	409
BlsI	GCNGC	3 cut(s)	436, 621, 712
BmcAI	AGTACT	1 cut(s)	591
Bme1390I	CCNGG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	772
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	105, 319
Bpu10I	CCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	681
BsaJI	CCNNGG	2 cut(s)	39, 409
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 339, 725
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	39, 409
BseGI	GGATG	2 cut(s)	120, 682
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	3 cut(s)	103, 339, 725
BseMII	CTCAG	4 cut(s)	196, 441, 875, 919
BseNI	ACTGG	1 cut(s)	321
BseXI	GCAGC	3 cut(s)	446, 631, 722
BshFI	GGCC	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	770
BshTI	ACCGGT	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	12, 726
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	3 cut(s)	103, 339, 725
BsmAI	GTCTC	1 cut(s)	908
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	654
Bsp143I	GATC	1 cut(s)	346
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	4 cut(s)	195, 442, 874, 918
BspLI	GGNNCC	1 cut(s)	772
BspT107I	GGYRCC	1 cut(s)	770
BsrFI	RCCGGY	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	654
BsrI	ACTGG	1 cut(s)	321
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	39, 409
BssMI	GATC	1 cut(s)	346
BssT1I	CCWWGG	2 cut(s)	39, 409
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	5 cut(s)	391, 492, 538, 759, 787
BstAUI	TGTACA	1 cut(s)	654
BstC8I	GCNNGC	4 cut(s)	612, 624, 628, 708
BstDEI	CTNAG	4 cut(s)	182, 450, 861, 905
BstF5I	GGATG	2 cut(s)	120, 682
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	1 cut(s)	908
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 616
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	3 cut(s)	279, 542, 739
BstV1I	GCAGC	3 cut(s)	446, 631, 722
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	120, 682
BtsIMutI	CAGTG	2 cut(s)	314, 563
Cac8I	GCNNGC	4 cut(s)	612, 624, 628, 708
CaiI	CAGNNNCTG	1 cut(s)	713
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	3 cut(s)	590, 655, 771
CspAI	ACCGGT	1 cut(s)	11
CviAII	CATG	5 cut(s)	56, 164, 195, 208, 334
CviQI	GTAC	3 cut(s)	590, 655, 771
DdeI	CTNAG	4 cut(s)	182, 450, 861, 905
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
DraI	TTTAAA	1 cut(s)	645
Eco130I	CCWWGG	2 cut(s)	39, 409
Eco57I	CTGAAG	2 cut(s)	587, 825
EcoRI	GAATTC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	39, 409
ErhI	CCWWGG	2 cut(s)	39, 409
FaeI	CATG	5 cut(s)	59, 167, 198, 211, 337
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	5 cut(s)	55, 163, 194, 207, 333
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	3 cut(s)	435, 620, 711
FokI	GGATG	2 cut(s)	127, 689
Fsp4HI	GCNGC	3 cut(s)	435, 620, 711
FspBI	CTAG	3 cut(s)	248, 410, 764
GluI	GCNGC	3 cut(s)	435, 620, 711
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	2 cut(s)	12, 726
Hin1II	CATG	5 cut(s)	59, 167, 198, 211, 337
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	635, 692
HpaII	CCGG	2 cut(s)	12, 726
HphI	GGTGA	3 cut(s)	26, 55, 89
Hpy166II	GTNNAC	5 cut(s)	136, 358, 512, 655, 736
Hpy188I	TCNGA	4 cut(s)	192, 526, 864, 908
Hpy188III	TCNNGA	2 cut(s)	112, 364
Hpy8I	GTNNAC	5 cut(s)	136, 358, 512, 655, 736
HpyAV	CCTTC	2 cut(s)	361, 562
HpyCH4III	ACNGT	5 cut(s)	391, 492, 538, 759, 787
HpyCH4V	TGCA	4 cut(s)	207, 434, 470, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 616
HpyF3I	CTNAG	4 cut(s)	182, 450, 861, 905
Hsp92II	CATG	5 cut(s)	59, 167, 198, 211, 337
KpnI	GGTACC	1 cut(s)	774
Kzo9I	GATC	1 cut(s)	346
Lsp1109I	GCAGC	3 cut(s)	446, 631, 722
LweI	GCATC	2 cut(s)	105, 319
MaeI	CTAG	3 cut(s)	248, 410, 764
MaeIII	GTNAC	4 cut(s)	14, 759, 818, 851
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MfeI	CAATTG	1 cut(s)	776
MluCI	AATT	4 cut(s)	202, 478, 776, 832
MmeI	TCCRAC	3 cut(s)	281, 379, 421
MnlI	CCTC	8 cut(s)	53, 189, 198, 407, 523, 667, 676, 870
MseI	TTAA	2 cut(s)	644, 876
MslI	CAYNNNNRTG	3 cut(s)	60, 168, 701
MspA1I	CMGCKG	1 cut(s)	713
MspI	CCGG	2 cut(s)	12, 726
MspR9I	CCNGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	776
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	431, 616
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	5 cut(s)	59, 167, 198, 211, 337
NlaIV	GGNNCC	1 cut(s)	772
NmuCI	GTSAC	2 cut(s)	14, 759
PfeI	GAWTC	2 cut(s)	635, 692
PflMI	CCANNNNNTGG	1 cut(s)	339
PinAI	ACCGGT	1 cut(s)	11
PkrI	GCNGC	3 cut(s)	436, 621, 712
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	772
PspPI	GGNCC	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	713
PvuII	CAGCTG	1 cut(s)	713
RsaI	GTAC	3 cut(s)	591, 656, 772
RsaNI	GTAC	3 cut(s)	590, 655, 771
RseI	CAYNNNNRTG	3 cut(s)	60, 168, 701
SaqAI	TTAA	2 cut(s)	644, 876
SatI	GCNGC	3 cut(s)	435, 620, 711
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	1 cut(s)	176
ScaI	AGTACT	1 cut(s)	591
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	8 cut(s)	45, 64, 150, 273, 418, 668, 715, 862
SfaNI	GCATC	2 cut(s)	105, 319
SfcI	CTRYAG	3 cut(s)	279, 542, 739
SgrAI	CRCCGGYG	1 cut(s)	11
SmiMI	CAYNNNNRTG	3 cut(s)	60, 168, 701
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SpeI	ACTAGT	1 cut(s)	763
Sse9I	AATT	4 cut(s)	202, 478, 776, 832
SspI	AATATT	1 cut(s)	874
SspMI	CTAG	3 cut(s)	248, 410, 764
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	39, 409
TaaI	ACNGT	5 cut(s)	391, 492, 538, 759, 787
TasI	AATT	4 cut(s)	202, 478, 776, 832
TatI	WGTACW	2 cut(s)	589, 654
TfiI	GAWTC	2 cut(s)	635, 692
Tru1I	TTAA	2 cut(s)	644, 876
Tru9I	TTAA	2 cut(s)	644, 876
TscAI	CASTG	2 cut(s)	321, 570
TseFI	GTSAC	2 cut(s)	14, 759
TseI	GCWGC	3 cut(s)	434, 619, 710
Tsp45I	GTSAC	2 cut(s)	14, 759
TspDTI	ATGAA	3 cut(s)	152, 224, 541
TspGWI	ACGGA	6 cut(s)	86, 156, 628, 814, 876, 920
TspRI	CASTG	2 cut(s)	321, 570
Van91I	CCANNNNNTGG	1 cut(s)	339
XapI	RAATTY	1 cut(s)	478
XmaJI	CCTAGG	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	735
XspI	CTAG	3 cut(s)	248, 410, 764
ZrmI	AGTACT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.