Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005637

Physical Location & Seq

Genomic Coordinates Forward (+)

79815239 .. 79822112

Gene Structure 6874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTCGTCTTCGTGTGCGGTTTCGACTTCAGTGAGAACACAGTTGTTTAATTCAGTACCTGAGAACAGGTTCATTGCCCCTACAAGACCATGTCAGTACCACGGAAGTAAATGTGTGATGAGCAGGAGGGGTTTTGCTTTTAGAGGAGTTGCAGCTGCAGGGCTTTCAGTAGTGGGTTCTTCTTCTTTGGCTACTGACCCTGCTCAAGGTATTGAAAGACTGCCTTTCAAACCAGAGGGGTACAATTTTTGGACTTGGAGAGGTCATAAAATTCATTATGTCGTGCAAGGAGAAGGGCCTGCTATTCTTCTTATTCATGGTTTTGGTGCTTCTTCATTTCACTGGAGGTACAACATACCAGAGTTGGCTAAAAAGTACAAGGTTTATGCTGTAGACTTGCTGGGCTTCGGTTGGAGTGAAAAAGCACTGGTTGAATATGATGCCATGATTTGGAAAGATCAAGTAGTGGACTTCTTGAAGGAGATAGTGAAAGAACCAACAGTTTTGGTTGGAAATAGCCTAGGAGGTTTTACTGCTTTGGTTGCAGCAGTTGGATTGCCTGAGCAAGTAGTTGGAGTTGCACTATTGAATTCAGCAGGACAGTTTGGAAATGCAAATAGTGAACCCGAGAAGTCTGACGAGGAAACAGTCCTACAGAAGTTCATCATAAAGCCACTGAAGGAAGTTTTCCAGCGAGTAGTACTTGGATTTTTATTCTGGCAAGCAAAGCAGCCCGCTCGCATTGAATCCGTTTTAAAGAGTGTGTACAAAAATACCTCCAATGTGGATGACTATCTGGTGGAATCCATAACAATGCCAGCAGCTGACCCCAATGCCGGAGAAGTCTACTACAGATTGATGACGCGGTTCATGTCAAACCAGACCAAGTATACTCTTGACAGTATCCTAAGCAAGATGTCTTGCCCATTGTTGTTGCTCTGGGGTGACTTGGACCCATGGGTAGGTCCTGCCAAGGCTAACAGAATCAAAGAGTTCTATCCAAATTCGACTTTGGTAAATTTGCAGGCTGGCCACTGTCCACACGATGAAGTTCCAGAGCTTGTAAACAAGGCTTTATTAGAATGGCTATCAACTTCGACAGCTGAAGCCTCTCTCCAAACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

375

Amino Acids

41.55

Weight (kDa)

7.05

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	100 - 350	1.9e-22	alpha/beta hydrolase fold
Hydrolase_4	PF12146	101 - 332	4.5e-13	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	102 - 357	3.2e-23	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36530 AT4G36530
fragaria_vesca	FvH4_1g13000 FvH4_1g13000 FvH4_1g13000
malus_domestica	MD15G1258200.v1.1
prunus_persica	Prupe.7G157100_v2.0.a1
pyrus_communis	pycom02g11440 pycom15g22600
rosa_chinensis	RchiOBHm_Chr2g0101081 RchiOBHm_Chr4g0423241 RchiOBHm_Chr6g0260581
rosa_laevigata	RLG00000017050
rosa_multiflora	Rmu_sc0007698.1_g000013
rosa_roxburghii	Rroxscaffold_2G00095650 Rroxscaffold_2G00141570 Rroxscaffold_5G00364280
rosa_rugosa	Rorug02G0097000
rosa_samantha	Rh2AG143000 Rh2BG148100 Rh2CG149600 Rh2DG148600 Rh5DG463100 Rh6CG159800
rosa_wichuraiana	Rw2G003750 Rw2G011270 Rw3G026160 Rw7G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	450
AccBSI	CCGCTC	1 cut(s)	737
AccI	GTMKAC	3 cut(s)	393, 846, 890
AccII	CGCG	1 cut(s)	865
AciI	CCGC	3 cut(s)	17, 735, 865
AcoI	YGGCCR	1 cut(s)	1030
AcsI	RAATTY	4 cut(s)	270, 589, 1003, 1018
AcuI	CTGAAG	3 cut(s)	12, 698, 1125
AfaI	GTAC	7 cut(s)	57, 98, 242, 350, 377, 702, 767
AfiI	CCNNNNNNNGG	4 cut(s)	206, 450, 836, 962
AgsI	TTSAA	6 cut(s)	215, 229, 434, 478, 589, 746
AluBI	AGCT	4 cut(s)	155, 824, 1060, 1103
AluI	AGCT	4 cut(s)	155, 824, 1060, 1103
AlwNI	CAGNNNCTG	2 cut(s)	59, 824
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	2 cut(s)	296, 1030
ApeKI	GCWGC	5 cut(s)	152, 155, 545, 730, 821
ApoI	RAATTY	4 cut(s)	270, 589, 1003, 1018
Asp700I	GAANNNNTTC	1 cut(s)	68
AspA2I	CCTAGG	1 cut(s)	520
AspS9I	GGNCC	3 cut(s)	296, 952, 965
AsuHPI	GGTGA	1 cut(s)	956
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	2 cut(s)	952, 965
AvrII	CCTAGG	1 cut(s)	520
BalI	TGGCCA	1 cut(s)	1032
BbvI	GCAGC	5 cut(s)	142, 164, 557, 742, 833
BcgI	CGANNNNNNTGC	2 cut(s)	719, 753
BciVI	GTATCC	1 cut(s)	914
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	4 cut(s)	156, 390, 653, 850
BfuI	GTATCC	1 cut(s)	914
BisI	GCNGC	5 cut(s)	153, 156, 546, 731, 822
BlnI	CCTAGG	1 cut(s)	520
BlsI	GCNGC	5 cut(s)	154, 157, 547, 732, 823
BmcAI	AGTACT	1 cut(s)	702
Bme18I	GGWCC	2 cut(s)	952, 965
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	3 cut(s)	296, 952, 965
BmiI	GGNNCC	1 cut(s)	954
BmsI	GCATC	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	364
Bpu10I	CCTNAGC	2 cut(s)	561, 908
BpuEI	CTTGAG	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	792
BsaJI	CCNNGG	4 cut(s)	100, 520, 956, 972
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 450, 836, 962
Bse1I	ACTGG	2 cut(s)	347, 432
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	792
BseDI	CCNNGG	4 cut(s)	100, 520, 956, 972
BseGI	GGATG	1 cut(s)	793
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	4 cut(s)	206, 450, 836, 962
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	51, 552
BseNI	ACTGG	2 cut(s)	347, 432
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	5 cut(s)	142, 164, 557, 742, 833
BseYI	CCCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	865
BshFI	GGCC	2 cut(s)	298, 1032
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	1 cut(s)	837
BslI	CCNNNNNNNGG	4 cut(s)	206, 450, 836, 962
BsnI	GGCC	2 cut(s)	298, 1032
BsoBI	CYCGRG	1 cut(s)	626
Bsp1407I	TGTACA	1 cut(s)	765
Bsp143I	GATC	1 cut(s)	457
Bsp19I	CCATGG	1 cut(s)	956
BspACI	CCGC	3 cut(s)	17, 735, 865
BspANI	GGCC	2 cut(s)	298, 1032
BspCNI	CTCAG	2 cut(s)	52, 553
BspFNI	CGCG	1 cut(s)	865
BspLI	GGNNCC	1 cut(s)	954
BspMAI	CTGCAG	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	737
BsrDI	GCAATG	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	765
BsrI	ACTGG	2 cut(s)	347, 432
BssECI	CCNNGG	4 cut(s)	100, 520, 956, 972
BssMI	GATC	1 cut(s)	457
BssNAI	GTATAC	1 cut(s)	891
BssT1I	CCWWGG	3 cut(s)	520, 956, 972
Bst1107I	GTATAC	1 cut(s)	891
Bst4CI	ACNGT	7 cut(s)	42, 502, 603, 649, 902, 1037, 1123
BstAUI	TGTACA	1 cut(s)	765
BstC8I	GCNNGC	7 cut(s)	300, 723, 735, 739, 819, 1026, 1030
BstDEI	CTNAG	3 cut(s)	60, 561, 908
BstDSI	CCRYGG	2 cut(s)	100, 956
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	793
BstFNI	CGCG	1 cut(s)	865
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	2 cut(s)	542, 727
BstSFI	CTRYAG	4 cut(s)	156, 390, 653, 850
BstUI	CGCG	1 cut(s)	865
BstV1I	GCAGC	5 cut(s)	142, 164, 557, 742, 833
BstZ17I	GTATAC	1 cut(s)	891
BsuI	GTATCC	1 cut(s)	914
BsuRI	GGCC	2 cut(s)	298, 1032
BtgI	CCRYGG	2 cut(s)	100, 956
BtsCI	GGATG	1 cut(s)	793
BtsIMutI	CAGTG	5 cut(s)	36, 340, 425, 674, 1033
Cac8I	GCNNGC	7 cut(s)	300, 723, 735, 739, 819, 1026, 1030
CaiI	CAGNNNCTG	2 cut(s)	59, 824
Cfr13I	GGNCC	3 cut(s)	296, 952, 965
CseI	GACGC	1 cut(s)	871
Csp6I	GTAC	7 cut(s)	56, 97, 241, 349, 376, 701, 766
CviAII	CATG	5 cut(s)	90, 317, 445, 871, 957
CviQI	GTAC	7 cut(s)	56, 97, 241, 349, 376, 701, 766
DdeI	CTNAG	3 cut(s)	60, 561, 908
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
DraI	TTTAAA	1 cut(s)	756
EaeI	YGGCCR	1 cut(s)	1030
Eco130I	CCWWGG	3 cut(s)	520, 956, 972
Eco47I	GGWCC	2 cut(s)	952, 965
Eco57I	CTGAAG	3 cut(s)	12, 698, 1125
Eco88I	CYCGRG	1 cut(s)	626
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoO109I	RGGNCCY	2 cut(s)	296, 965
EcoRI	GAATTC	1 cut(s)	589
EcoT14I	CCWWGG	3 cut(s)	520, 956, 972
ErhI	CCWWGG	3 cut(s)	520, 956, 972
FaeI	CATG	5 cut(s)	93, 320, 448, 874, 960
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FatI	CATG	5 cut(s)	89, 316, 444, 870, 956
FauI	CCCGC	1 cut(s)	742
FblI	GTMKAC	3 cut(s)	393, 846, 890
Fnu4HI	GCNGC	5 cut(s)	153, 156, 546, 731, 822
FokI	GGATG	1 cut(s)	800
Fsp4HI	GCNGC	5 cut(s)	153, 156, 546, 731, 822
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	5 cut(s)	153, 156, 546, 731, 822
GsaI	CCCAGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	364
HaeIII	GGCC	2 cut(s)	298, 1032
HapII	CCGG	1 cut(s)	837
HgaI	GACGC	1 cut(s)	871
Hin1II	CATG	5 cut(s)	93, 320, 448, 874, 960
HinfI	GANTC	3 cut(s)	746, 803, 984
HpaII	CCGG	1 cut(s)	837
HphI	GGTGA	1 cut(s)	956
Hpy166II	GTNNAC	8 cut(s)	394, 469, 623, 766, 847, 891, 1040, 1066
Hpy188I	TCNGA	1 cut(s)	637
Hpy188III	TCNNGA	3 cut(s)	475, 896, 1055
Hpy8I	GTNNAC	8 cut(s)	394, 469, 623, 766, 847, 891, 1040, 1066
HpyAV	CCTTC	3 cut(s)	287, 472, 673
HpyCH4III	ACNGT	7 cut(s)	42, 502, 603, 649, 902, 1037, 1123
HpyCH4V	TGCA	7 cut(s)	152, 158, 286, 545, 581, 614, 1024
HpyF10VI	GCNNNNNNNGC	2 cut(s)	542, 727
HpyF3I	CTNAG	3 cut(s)	60, 561, 908
Hsp92II	CATG	5 cut(s)	93, 320, 448, 874, 960
Kzo9I	GATC	1 cut(s)	457
Lsp1109I	GCAGC	5 cut(s)	142, 164, 557, 742, 833
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	521
MaeIII	GTNAC	1 cut(s)	944
MalI	GATC	1 cut(s)	459
MbiI	CCGCTC	1 cut(s)	737
MboI	GATC	1 cut(s)	457
MboII	GAAGA	4 cut(s)	171, 174, 299, 324
MlsI	TGGCCA	1 cut(s)	1032
MluCI	AATT	6 cut(s)	49, 244, 270, 589, 1003, 1018
MluNI	TGGCCA	1 cut(s)	1032
MmeI	TCCRAC	4 cut(s)	392, 490, 532, 553
MnlI	CCTC	9 cut(s)	120, 137, 229, 254, 339, 518, 634, 787, 1120
Mox20I	TGGCCA	1 cut(s)	1032
MroXI	GAANNNNTTC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	1032
MseI	TTAA	2 cut(s)	48, 755
MslI	CAYNNNNRTG	1 cut(s)	812
Msp20I	TGGCCA	1 cut(s)	1032
MspA1I	CMGCKG	3 cut(s)	155, 824, 1103
MspI	CCGG	1 cut(s)	837
MvnI	CGCG	1 cut(s)	865
MwoI	GCNNNNNNNGC	2 cut(s)	542, 727
NcoI	CCATGG	1 cut(s)	956
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	5 cut(s)	93, 320, 448, 874, 960
NlaIV	GGNNCC	1 cut(s)	954
NmuCI	GTSAC	1 cut(s)	944
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	746, 803, 984
PflFI	GACNNNGTC	1 cut(s)	90
PflMI	CCANNNNNTGG	1 cut(s)	450
PkrI	GCNGC	5 cut(s)	154, 157, 547, 732, 823
PpuMI	RGGWCCY	1 cut(s)	965
Psp5II	RGGWCCY	1 cut(s)	965
PspFI	CCCAGC	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	954
PspPI	GGNCC	3 cut(s)	296, 952, 965
PspPPI	RGGWCCY	1 cut(s)	965
PstI	CTGCAG	1 cut(s)	160
PstNI	CAGNNNCTG	2 cut(s)	59, 824
PsyI	GACNNNGTC	1 cut(s)	90
PvuII	CAGCTG	3 cut(s)	155, 824, 1103
RsaI	GTAC	7 cut(s)	57, 98, 242, 350, 377, 702, 767
RsaNI	GTAC	7 cut(s)	56, 97, 241, 349, 376, 701, 766
RseI	CAYNNNNRTG	1 cut(s)	812
SaqAI	TTAA	2 cut(s)	48, 755
SatI	GCNGC	5 cut(s)	153, 156, 546, 731, 822
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	3 cut(s)	296, 952, 965
ScaI	AGTACT	1 cut(s)	702
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	4 cut(s)	156, 390, 653, 850
SinI	GGWCC	2 cut(s)	952, 965
SmiMI	CAYNNNNRTG	1 cut(s)	812
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	6 cut(s)	49, 244, 270, 589, 1003, 1018
SsiI	CCGC	3 cut(s)	17, 735, 865
SspMI	CTAG	1 cut(s)	521
StyI	CCWWGG	3 cut(s)	520, 956, 972
TaaI	ACNGT	7 cut(s)	42, 502, 603, 649, 902, 1037, 1123
TaqI	TCGA	3 cut(s)	23, 1007, 1097
TasI	AATT	6 cut(s)	49, 244, 270, 589, 1003, 1018
TatI	WGTACW	3 cut(s)	375, 700, 765
TfiI	GAWTC	3 cut(s)	746, 803, 984
Tru1I	TTAA	2 cut(s)	48, 755
Tru9I	TTAA	2 cut(s)	48, 755
TscAI	CASTG	5 cut(s)	36, 347, 432, 681, 1040
TseFI	GTSAC	1 cut(s)	944
TseI	GCWGC	5 cut(s)	152, 155, 545, 730, 821
Tsp45I	GTSAC	1 cut(s)	944
TspDTI	ATGAA	7 cut(s)	61, 263, 305, 324, 652, 859, 1062
TspGWI	ACGGA	2 cut(s)	117, 739
TspRI	CASTG	5 cut(s)	36, 347, 432, 681, 1040
Tth111I	GACNNNGTC	1 cut(s)	90
Van91I	CCANNNNNTGG	1 cut(s)	450
VpaK11BI	GGWCC	2 cut(s)	952, 965
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	4 cut(s)	270, 589, 1003, 1018
XmaJI	CCTAGG	1 cut(s)	520
XmiI	GTMKAC	3 cut(s)	393, 846, 890
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	521
ZrmI	AGTACT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.