Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005637

Physical Location & Seq

Genomic Coordinates Reverse (-)

11376069 .. 11378241

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCGTCTTCGTGTGCGGTTTCGACTTCAGTGAGAACACAGTTGTTTAATTCAGTACCTGAGAACAGGTTCATTGCCCCTACAAGACCATTTCAGTACCACGGAAGTAAATGTGTGATGAGCAGGAGGGGTTTTGCTTTTAGAGGAGTTGCAGCTGCAGGGCTTTCAGTAGTGGGTTCTTCTTCTTTGGCTACTGACCCTGCTCAAGGTATTGAAAGACTGCCTTTCAAACCAGAGGGGTACAATTTTTGGACTTGGAGAGGTCATAAAATTCATTATGTCGTGCAAGGAGAAGGGCCTGCTGTTCTTCTTATTCATGGTTTTGGTGCTTCTTCATTTCACTGGAGGTATAATATACCAGAGTTGGCTAAAAAATACAAGGTTTATGCTATAGACTTGCTGGGCTTCGGTTGGAGTGAAAAAGCACTGGTTGAATATGATGCCATGATTTGGAAAGATCAAGTAGTGGACTTCTTGAAGGAGATAGTGAAAGAACCAACAGTTTTGGTTGGAAATAGCCTAGGAGGTTTTACTGCTTTGGTTGCAGCAGTTGGATTGCCTGAGCAAGTAGTTGGAGTTGCACTATTGAATTCGGCAGGACAGTTTGGAAATGCAAATAGTGAACCTGAGAAGTCTGACGAGGAAACAGTCCTACAGAAGTTCATCATAAAGCCACTGAAGGAAGTTTTCCAGCGAGTAGTACTTGGATTTTTATTCTGGCAAGCAAAGCAGCCCGCTCGCATTGAATCCGTTTTAAAGAGTGTAAGTTCCTTAATGATGACACGGTTCATGTCAAACCAGACCAAGTATACTCTTGACAGTATCCTAAGCAAGATGTCTTGCCCATTGTTGTTGCTCTGGGGTGACTTGGACCCATGGGTAGGTCCTGCCAAGGCTAACAGAATCAAAGAGTTCTATCCAAATTCGACTTTGGTAAATTTGCAGGCTGGCCACTGTCCACACGATGAAGTTCCAGAGCTTGTAAACAAGGCTTTATTAGAATGGCTCTCAACTTCGACAGCTGAGGCCTCTCTCCAAACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

348

Amino Acids

38.52

Weight (kDa)

8.54

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	100 - 240	5.4e-19	alpha/beta hydrolase fold
Hydrolase_4	PF12146	101 - 300	3.7e-10	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	102 - 330	1.6e-22	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36530 AT4G36530
fragaria_vesca	FvH4_1g13000 FvH4_1g13000 FvH4_1g13000
malus_domestica	MD15G1258200.v1.1
prunus_persica	Prupe.7G157100_v2.0.a1
pyrus_communis	pycom02g11440 pycom15g22600
rosa_chinensis	RchiOBHm_Chr2g0101081 RchiOBHm_Chr4g0423241 RchiOBHm_Chr6g0260581
rosa_laevigata	RLG00000017050
rosa_multiflora	Rmu_sc0007698.1_g000013
rosa_roxburghii	Rroxscaffold_2G00095650 Rroxscaffold_2G00141570 Rroxscaffold_5G00364280
rosa_rugosa	Rorug02G0097000
rosa_samantha	Rh2AG143000 Rh2BG148100 Rh2CG149600 Rh2DG148600 Rh5DG463100 Rh6CG159800
rosa_wichuraiana	Rw2G003750 Rw2G011270 Rw3G026160 Rw7G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	450
AccBSI	CCGCTC	1 cut(s)	737
AccI	GTMKAC	1 cut(s)	809
AciI	CCGC	2 cut(s)	17, 735
AcoI	YGGCCR	1 cut(s)	949
AcsI	RAATTY	4 cut(s)	270, 589, 922, 937
AcuI	CTGAAG	2 cut(s)	12, 698
AfaI	GTAC	4 cut(s)	57, 98, 242, 702
AfiI	CCNNNNNNNGG	3 cut(s)	206, 450, 881
AgsI	TTSAA	6 cut(s)	215, 229, 434, 478, 589, 746
AluBI	AGCT	3 cut(s)	155, 979, 1022
AluI	AGCT	3 cut(s)	155, 979, 1022
AlwNI	CAGNNNCTG	1 cut(s)	59
AoxI	GGCC	3 cut(s)	296, 949, 1026
ApeKI	GCWGC	4 cut(s)	152, 155, 545, 730
ApoI	RAATTY	4 cut(s)	270, 589, 922, 937
Asp700I	GAANNNNTTC	1 cut(s)	68
AspA2I	CCTAGG	1 cut(s)	520
AspS9I	GGNCC	3 cut(s)	296, 871, 884
AsuHPI	GGTGA	1 cut(s)	875
AvaII	GGWCC	2 cut(s)	871, 884
AvrII	CCTAGG	1 cut(s)	520
BalI	TGGCCA	1 cut(s)	951
BbvCI	CCTCAGC	1 cut(s)	1023
BbvI	GCAGC	4 cut(s)	142, 164, 557, 742
BcgI	CGANNNNNNTGC	2 cut(s)	719, 753
BciVI	GTATCC	1 cut(s)	833
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	3 cut(s)	156, 390, 653
BfuI	GTATCC	1 cut(s)	833
BisI	GCNGC	4 cut(s)	153, 156, 546, 731
BlnI	CCTAGG	1 cut(s)	520
BlsI	GCNGC	4 cut(s)	154, 157, 547, 732
BmcAI	AGTACT	1 cut(s)	702
Bme18I	GGWCC	2 cut(s)	871, 884
BmgT120I	GGNCC	3 cut(s)	296, 871, 884
BmiI	GGNNCC	1 cut(s)	873
BmsI	GCATC	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	364
Bpu10I	CCTNAGC	3 cut(s)	561, 827, 1023
BpuEI	CTTGAG	1 cut(s)	189
BsaJI	CCNNGG	4 cut(s)	100, 520, 875, 891
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 450, 881
Bse1I	ACTGG	2 cut(s)	347, 432
Bse3DI	GCAATG	1 cut(s)	72
BseDI	CCNNGG	4 cut(s)	100, 520, 875, 891
BseLI	CCNNNNNNNGG	3 cut(s)	206, 450, 881
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	4 cut(s)	51, 552, 618, 1014
BseNI	ACTGG	2 cut(s)	347, 432
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	4 cut(s)	142, 164, 557, 742
BseYI	CCCAGC	1 cut(s)	400
BshFI	GGCC	3 cut(s)	298, 951, 1028
BslI	CCNNNNNNNGG	3 cut(s)	206, 450, 881
BsnI	GGCC	3 cut(s)	298, 951, 1028
Bsp143I	GATC	1 cut(s)	457
Bsp19I	CCATGG	1 cut(s)	875
BspACI	CCGC	2 cut(s)	17, 735
BspANI	GGCC	3 cut(s)	298, 951, 1028
BspCNI	CTCAG	4 cut(s)	52, 553, 619, 1015
BspLI	GGNNCC	1 cut(s)	873
BspMAI	CTGCAG	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	737
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	347, 432
BssECI	CCNNGG	4 cut(s)	100, 520, 875, 891
BssMI	GATC	1 cut(s)	457
BssNAI	GTATAC	1 cut(s)	810
BssT1I	CCWWGG	3 cut(s)	520, 875, 891
Bst1107I	GTATAC	1 cut(s)	810
Bst4CI	ACNGT	8 cut(s)	42, 502, 603, 649, 786, 821, 956, 1042
BstC8I	GCNNGC	6 cut(s)	300, 723, 735, 739, 945, 949
BstDEI	CTNAG	5 cut(s)	60, 561, 627, 827, 1023
BstDSI	CCRYGG	2 cut(s)	100, 875
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	2 cut(s)	542, 727
BstSFI	CTRYAG	3 cut(s)	156, 390, 653
BstV1I	GCAGC	4 cut(s)	142, 164, 557, 742
BstZ17I	GTATAC	1 cut(s)	810
BsuI	GTATCC	1 cut(s)	833
BsuRI	GGCC	3 cut(s)	298, 951, 1028
BtgI	CCRYGG	2 cut(s)	100, 875
BtsIMutI	CAGTG	5 cut(s)	36, 340, 425, 674, 952
Cac8I	GCNNGC	6 cut(s)	300, 723, 735, 739, 945, 949
CaiI	CAGNNNCTG	1 cut(s)	59
Cfr13I	GGNCC	3 cut(s)	296, 871, 884
Csp6I	GTAC	4 cut(s)	56, 97, 241, 701
CviAII	CATG	4 cut(s)	317, 445, 790, 876
CviQI	GTAC	4 cut(s)	56, 97, 241, 701
DdeI	CTNAG	5 cut(s)	60, 561, 627, 827, 1023
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
DraI	TTTAAA	1 cut(s)	756
EaeI	YGGCCR	1 cut(s)	949
Eco130I	CCWWGG	3 cut(s)	520, 875, 891
Eco147I	AGGCCT	1 cut(s)	1028
Eco47I	GGWCC	2 cut(s)	871, 884
Eco57I	CTGAAG	2 cut(s)	12, 698
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoO109I	RGGNCCY	2 cut(s)	296, 884
EcoRI	GAATTC	1 cut(s)	589
EcoT14I	CCWWGG	3 cut(s)	520, 875, 891
ErhI	CCWWGG	3 cut(s)	520, 875, 891
FaeI	CATG	4 cut(s)	320, 448, 793, 879
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FatI	CATG	4 cut(s)	316, 444, 789, 875
FauI	CCCGC	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	809
Fnu4HI	GCNGC	4 cut(s)	153, 156, 546, 731
Fsp4HI	GCNGC	4 cut(s)	153, 156, 546, 731
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	4 cut(s)	153, 156, 546, 731
GsaI	CCCAGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	364
HaeIII	GGCC	3 cut(s)	298, 951, 1028
Hin1II	CATG	4 cut(s)	320, 448, 793, 879
HinfI	GANTC	2 cut(s)	746, 903
HphI	GGTGA	1 cut(s)	875
Hpy166II	GTNNAC	5 cut(s)	469, 623, 810, 959, 985
Hpy188I	TCNGA	1 cut(s)	637
Hpy188III	TCNNGA	3 cut(s)	475, 815, 974
Hpy8I	GTNNAC	5 cut(s)	469, 623, 810, 959, 985
HpyAV	CCTTC	3 cut(s)	287, 472, 673
HpyCH4III	ACNGT	8 cut(s)	42, 502, 603, 649, 786, 821, 956, 1042
HpyCH4V	TGCA	7 cut(s)	152, 158, 286, 545, 581, 614, 943
HpyF10VI	GCNNNNNNNGC	2 cut(s)	542, 727
HpyF3I	CTNAG	5 cut(s)	60, 561, 627, 827, 1023
Hsp92II	CATG	4 cut(s)	320, 448, 793, 879
Kzo9I	GATC	1 cut(s)	457
Lsp1109I	GCAGC	4 cut(s)	142, 164, 557, 742
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	521
MaeIII	GTNAC	1 cut(s)	863
MalI	GATC	1 cut(s)	459
MbiI	CCGCTC	1 cut(s)	737
MboI	GATC	1 cut(s)	457
MboII	GAAGA	4 cut(s)	171, 174, 299, 324
MlsI	TGGCCA	1 cut(s)	951
MluCI	AATT	6 cut(s)	49, 244, 270, 589, 922, 937
MluNI	TGGCCA	1 cut(s)	951
MmeI	TCCRAC	4 cut(s)	392, 490, 532, 553
MnlI	CCTC	9 cut(s)	120, 137, 229, 254, 339, 518, 634, 1018, 1039
Mox20I	TGGCCA	1 cut(s)	951
MroXI	GAANNNNTTC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	951
MseI	TTAA	3 cut(s)	48, 755, 773
Msp20I	TGGCCA	1 cut(s)	951
MspA1I	CMGCKG	2 cut(s)	155, 1022
MwoI	GCNNNNNNNGC	2 cut(s)	542, 727
NcoI	CCATGG	1 cut(s)	875
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	4 cut(s)	320, 448, 793, 879
NlaIV	GGNNCC	1 cut(s)	873
NmuCI	GTSAC	1 cut(s)	863
PceI	AGGCCT	1 cut(s)	1028
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	746, 903
PflMI	CCANNNNNTGG	1 cut(s)	450
PkrI	GCNGC	4 cut(s)	154, 157, 547, 732
PpuMI	RGGWCCY	1 cut(s)	884
Psp5II	RGGWCCY	1 cut(s)	884
PspFI	CCCAGC	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	873
PspPI	GGNCC	3 cut(s)	296, 871, 884
PspPPI	RGGWCCY	1 cut(s)	884
PstI	CTGCAG	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	59
PvuII	CAGCTG	2 cut(s)	155, 1022
RsaI	GTAC	4 cut(s)	57, 98, 242, 702
RsaNI	GTAC	4 cut(s)	56, 97, 241, 701
SaqAI	TTAA	3 cut(s)	48, 755, 773
SatI	GCNGC	4 cut(s)	153, 156, 546, 731
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	3 cut(s)	296, 871, 884
ScaI	AGTACT	1 cut(s)	702
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	3 cut(s)	156, 390, 653
SinI	GGWCC	2 cut(s)	871, 884
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	6 cut(s)	49, 244, 270, 589, 922, 937
SseBI	AGGCCT	1 cut(s)	1028
SsiI	CCGC	2 cut(s)	17, 735
SspMI	CTAG	1 cut(s)	521
StuI	AGGCCT	1 cut(s)	1028
StyI	CCWWGG	3 cut(s)	520, 875, 891
TaaI	ACNGT	8 cut(s)	42, 502, 603, 649, 786, 821, 956, 1042
TaqI	TCGA	3 cut(s)	23, 926, 1016
TasI	AATT	6 cut(s)	49, 244, 270, 589, 922, 937
TatI	WGTACW	1 cut(s)	700
TfiI	GAWTC	2 cut(s)	746, 903
Tru1I	TTAA	3 cut(s)	48, 755, 773
Tru9I	TTAA	3 cut(s)	48, 755, 773
TscAI	CASTG	5 cut(s)	36, 347, 432, 681, 959
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	4 cut(s)	152, 155, 545, 730
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	7 cut(s)	61, 263, 305, 324, 652, 778, 981
TspGWI	ACGGA	2 cut(s)	117, 739
TspRI	CASTG	5 cut(s)	36, 347, 432, 681, 959
Van91I	CCANNNNNTGG	1 cut(s)	450
VpaK11BI	GGWCC	2 cut(s)	871, 884
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	4 cut(s)	270, 589, 922, 937
XmaJI	CCTAGG	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	809
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	521
ZrmI	AGTACT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.