Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005637

Physical Location & Seq

Genomic Coordinates Reverse (-)

8082607 .. 8083136

Gene Structure 530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTGTTTTAAATACTTATTTTTGCCAACACAGGTGTATAAAAACACTGCCAATGCCGATGACTCTCTGGTGGAGTCCATAATAATGCCAGCAGCTGACCCGAACGCTGGAGAAGTCTATTACAGATTGATGACCGGGTTCATGACAAACCAGACCAAATATACTCTTGACAGTGTCTTAAGCAAGATGTTTTGTCCACTGTTTTTGGTCTGGGGGGACCTGGATCCGTGGGTAGGTCCGGCCGAGGCTAACACCATAAAAGCATTTTATCCAAATACGACTTTGGTAAGTCTGCAGGCCGGGCACTGCCCACACGATGAAGTTTCAGAGCTTGTCAAATCGGCTTTATTAGATTGGGTATCAACTTCGCCACTCAAAACGAATAGAAGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

132

Amino Acids

14.65

Weight (kDa)

4.94

Isoelectric Point (pI)

24.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36530 AT4G36530
fragaria_vesca	FvH4_1g13000 FvH4_1g13000 FvH4_1g13000
malus_domestica	MD15G1258200.v1.1
prunus_persica	Prupe.7G157100_v2.0.a1
pyrus_communis	pycom02g11440 pycom15g22600
rosa_chinensis	RchiOBHm_Chr2g0101081 RchiOBHm_Chr4g0423241 RchiOBHm_Chr6g0260581
rosa_laevigata	RLG00000017050
rosa_multiflora	Rmu_sc0007698.1_g000013
rosa_roxburghii	Rroxscaffold_2G00095650 Rroxscaffold_2G00141570 Rroxscaffold_5G00364280
rosa_rugosa	Rorug02G0097000
rosa_samantha	Rh2AG143000 Rh2BG148100 Rh2CG149600 Rh2DG148600 Rh5DG463100 Rh6CG159800
rosa_wichuraiana	Rw2G003750 Rw2G011270 Rw3G026160 Rw7G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	218, 231
AcoI	YGGCCR	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	107, 233
AflII	CTTAAG	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	2 cut(s)	95, 331
AluI	AGCT	2 cut(s)	95, 331
AlwI	GGATC	2 cut(s)	218, 231
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	240, 297
ApeKI	GCWGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	217, 236
AsuC2I	CCSGG	2 cut(s)	136, 301
AvaII	GGWCC	2 cut(s)	217, 236
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	2 cut(s)	136, 301
BfmI	CTRYAG	1 cut(s)	293
BfrI	CTTAAG	1 cut(s)	178
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	3 cut(s)	136, 221, 301
Bme18I	GGWCC	2 cut(s)	217, 236
BmgT120I	GGNCC	2 cut(s)	217, 236
BmiI	GGNNCC	2 cut(s)	218, 225
BmrFI	CCNGG	3 cut(s)	136, 221, 301
BpmI	CTGGAG	1 cut(s)	129
BpuMI	CCSGG	2 cut(s)	136, 301
BsaJI	CCNNGG	2 cut(s)	227, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 233
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	227, 243
BseLI	CCNNNNNNNGG	2 cut(s)	107, 233
BseSI	GKGCMC	1 cut(s)	306
BseX3I	CGGCCG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	242, 299
BsiEI	CGRYCG	1 cut(s)	243
BsiSI	CCGG	3 cut(s)	135, 239, 300
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	107, 233
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	242, 299
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	223
BspANI	GGCC	2 cut(s)	242, 299
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	218, 225
BspMAI	CTGCAG	1 cut(s)	297
BspPI	GGATC	2 cut(s)	218, 231
BspTI	CTTAAG	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	227, 243
BssMI	GATC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	173, 201
BstAFI	CTTAAG	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	90, 297
BstDSI	CCRYGG	1 cut(s)	227
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	3 cut(s)	134, 219, 299
BstSFI	CTRYAG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BstZI	CGGCCG	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	242, 299
BtgI	CCRYGG	1 cut(s)	227
BtsI	GCAGTG	2 cut(s)	45, 304
BtsIMutI	CAGTG	4 cut(s)	45, 178, 197, 304
Cac8I	GCNNGC	2 cut(s)	90, 297
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	217, 236
CspCI	CAANNNNNGTGG	2 cut(s)	186, 221
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	6 cut(s)	95, 242, 248, 299, 331, 344
CviKI_1	RGCY	6 cut(s)	95, 242, 248, 299, 331, 344
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
DraI	TTTAAA	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	240
EagI	CGGCCG	1 cut(s)	240
EclXI	CGGCCG	1 cut(s)	240
Eco47I	GGWCC	2 cut(s)	217, 236
Eco52I	CGGCCG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	219
FaeI	CATG	1 cut(s)	145
FaiI	YATR	6 cut(s)	39, 80, 143, 162, 257, 392
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	242, 299
HapII	CCGG	3 cut(s)	135, 239, 300
Hin1II	CATG	1 cut(s)	145
HinfI	GANTC	2 cut(s)	62, 74
HpaII	CCGG	3 cut(s)	135, 239, 300
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	2 cut(s)	142, 167
Hpy8I	GTNNAC	1 cut(s)	197
HpyCH4III	ACNGT	2 cut(s)	173, 201
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
Hsp92II	CATG	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	223
Lsp1109I	GCAGC	1 cut(s)	104
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	306
MlyI	GAGTC	2 cut(s)	56, 83
MnlI	CCTC	1 cut(s)	238
MseI	TTAA	2 cut(s)	9, 179
MslI	CAYNNNNRTG	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	95
MspCI	CTTAAG	1 cut(s)	178
MspI	CCGG	3 cut(s)	135, 239, 300
MspR9I	CCNGG	3 cut(s)	136, 221, 301
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	301
NciI	CCSGG	2 cut(s)	136, 301
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	2 cut(s)	218, 225
NmeAIII	GCCGAG	1 cut(s)	268
PagI	TCATGA	1 cut(s)	141
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	2 cut(s)	56, 82
PpsI	GAGTC	2 cut(s)	56, 82
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	218, 225
PspPI	GGNCC	2 cut(s)	217, 236
PspPPI	RGGWCCY	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	297
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	9, 179
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	2 cut(s)	217, 236
SchI	GAGTC	2 cut(s)	56, 83
ScrFI	CCNGG	3 cut(s)	136, 221, 301
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	5 cut(s)	36, 97, 222, 238, 333
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	2 cut(s)	217, 236
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
StyD4I	CCNGG	3 cut(s)	134, 219, 299
TaaI	ACNGT	2 cut(s)	173, 201
Tru1I	TTAA	2 cut(s)	9, 179
Tru9I	TTAA	2 cut(s)	9, 179
TscAI	CASTG	4 cut(s)	52, 178, 204, 311
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	130, 333
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	4 cut(s)	52, 178, 204, 311
Tth111I	GACNNNGTC	1 cut(s)	173
Vha464I	CTTAAG	1 cut(s)	178
VpaK11BI	GGWCC	2 cut(s)	217, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.