Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005637

Physical Location & Seq

Genomic Coordinates Forward (+)

17038877 .. 17052424

Gene Structure 13548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAATGCACGGCCATCACTTATTTATGAGTTAAACTCATCATCTCTTACTTATGCAGTGAAATTAATCGATGTCATGGGACTAAATGATACTCATTTCATTATCAATGTGAAAGGCGAAGAACAACGCGTCGTTGGGATCTACTCTACTCGAGATCAATGTTGGAGCGTCTCGAGGATCCGAAAACCCAAACTCAAGCTTGGATCTTCATCTCCGACCTCCATAGGCGTCGGCGACTCACGGTGGTCCGACCGAATGCCGAGCAACGATGACGGGGATGGCGAAGCCGAAGAAGCATGTGGCGATGGAGATCCGGTATTGAAAGACTGCCTTTCAAACCGTAGGGGTACAATTTTTGGACTTGGAGAGGTCATAAAATTCATTATGTCGTGCAAGGAGAAGGGCATGTTGTTCTTCTTATTCATGGTTTTGGTGCTTCTTCATTTCACCGGAGGTTTGTTTGCTTCTTTAAACCCATCTGCTCCAGTTTATGCTATAGACTTGCTGGGCTTCGGTTGGAGTGAAAAAGCACCGGTTGAATATGATGCCATGATTTGGAAAGATCAAGTAGTGGACTTCTTGAAGGAGATAGTGAAAGAACCAACAGTTGGGTTCGTGTTGGGTTTTTGCGGGGACGATTACAAGATTAAAGTTTGGAACTACAAGATGCATAGATGTTTTTTTACTCTTCTCGAGCATCTAGATTATATTCGTCCCGTGCAATCTCACTTTTTTTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

247

Amino Acids

27.9

Weight (kDa)

5.76

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36530 AT4G36530
fragaria_vesca	FvH4_1g13000 FvH4_1g13000 FvH4_1g13000
malus_domestica	MD15G1258200.v1.1
prunus_persica	Prupe.7G157100_v2.0.a1
pyrus_communis	pycom02g11440 pycom15g22600
rosa_chinensis	RchiOBHm_Chr2g0101081 RchiOBHm_Chr4g0423241 RchiOBHm_Chr6g0260581
rosa_laevigata	RLG00000017050
rosa_multiflora	Rmu_sc0007698.1_g000013
rosa_roxburghii	Rroxscaffold_2G00095650 Rroxscaffold_2G00141570 Rroxscaffold_5G00364280
rosa_rugosa	Rorug02G0097000
rosa_samantha	Rh2AG143000 Rh2BG148100 Rh2CG149600 Rh2DG148600 Rh5DG463100 Rh6CG159800
rosa_wichuraiana	Rw2G003750 Rw2G011270 Rw3G026160 Rw7G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	555, 608
AccII	CGCG	1 cut(s)	129
AciI	CCGC	1 cut(s)	630
AclWI	GGATC	5 cut(s)	146, 172, 185, 211, 305
AcoI	YGGCCR	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	2 cut(s)	555, 608
AflIII	ACRYGT	1 cut(s)	127
AgeI	ACCGGT	1 cut(s)	532
AgsI	TTSAA	4 cut(s)	322, 336, 539, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	591, 623
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	5 cut(s)	146, 172, 185, 211, 305
Ama87I	CYCGRG	3 cut(s)	150, 172, 692
AoxI	GGCC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	377
AseI	ATTAAT	1 cut(s)	65
AsiGI	ACCGGT	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	439
AvaI	CYCGRG	3 cut(s)	150, 172, 692
AvaII	GGWCC	1 cut(s)	246
BamHI	GGATCC	1 cut(s)	177
BccI	CCATC	4 cut(s)	22, 272, 299, 484
BceAI	ACGGC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	1 cut(s)	495
Bme18I	GGWCC	1 cut(s)	246
BmeT110I	CYCGRG	3 cut(s)	150, 172, 692
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	179
BmsI	GCATC	3 cut(s)	535, 657, 706
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	69
BsaBI	GATNNNNATC	2 cut(s)	208, 309
BsaHI	GRCGYC	1 cut(s)	228
BsaWI	WCCGGW	3 cut(s)	313, 449, 532
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	555, 608
Bse118I	RCCGGY	1 cut(s)	532
Bse1I	ACTGG	1 cut(s)	485
Bse8I	GATNNNNATC	2 cut(s)	208, 309
BseCI	ATCGAT	1 cut(s)	69
BseGI	GGATG	1 cut(s)	283
BseJI	GATNNNNATC	2 cut(s)	208, 309
BseLI	CCNNNNNNNGG	2 cut(s)	555, 608
BseNI	ACTGG	1 cut(s)	485
BseYI	CCCAGC	1 cut(s)	505
Bsh1236I	CGCG	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	1 cut(s)	13
BshTI	ACCGGT	1 cut(s)	532
BshVI	ATCGAT	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	253
BsiHKCI	CYCGRG	3 cut(s)	150, 172, 692
BsiSI	CCGG	3 cut(s)	314, 450, 533
BslFI	GGGAC	3 cut(s)	93, 647, 699
BslI	CCNNNNNNNGG	2 cut(s)	555, 608
BsmAI	GTCTC	1 cut(s)	175
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	3 cut(s)	93, 647, 699
BsmI	GAATGC	2 cut(s)	10, 261
BsnI	GGCC	1 cut(s)	13
BsoBI	CYCGRG	3 cut(s)	150, 172, 692
Bsp143I	GATC	6 cut(s)	138, 154, 177, 203, 310, 562
BspACI	CCGC	1 cut(s)	630
BspANI	GGCC	1 cut(s)	13
BspDI	ATCGAT	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	5 cut(s)	146, 172, 185, 211, 305
BsrFI	RCCGGY	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	485
BssAI	RCCGGY	1 cut(s)	532
BssMI	GATC	6 cut(s)	138, 154, 177, 203, 310, 562
BssNI	GRCGYC	1 cut(s)	228
Bst4CI	ACNGT	3 cut(s)	243, 341, 607
Bst6I	CTCTTC	1 cut(s)	693
BstACI	GRCGYC	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	129
BstKTI	GATC	6 cut(s)	141, 157, 180, 206, 313, 565
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	6 cut(s)	138, 154, 177, 203, 310, 562
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNSI	RCATGY	2 cut(s)	300, 409
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	1 cut(s)	129
BstX2I	RGATCY	4 cut(s)	138, 177, 203, 310
BstYI	RGATCY	4 cut(s)	138, 177, 203, 310
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	13
BsuTUI	ATCGAT	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	532
Cfr13I	GGNCC	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	3 cut(s)	118, 157, 217
Csp6I	GTAC	1 cut(s)	348
CspAI	ACCGGT	1 cut(s)	532
CviAII	CATG	5 cut(s)	76, 297, 406, 424, 550
CviJI	RGCY	4 cut(s)	13, 199, 287, 510
CviKI_1	RGCY	4 cut(s)	13, 199, 287, 510
CviQI	GTAC	1 cut(s)	348
DpnI	GATC	6 cut(s)	140, 156, 179, 205, 312, 564
DpnII	GATC	6 cut(s)	138, 154, 177, 203, 310, 562
DraI	TTTAAA	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	246
Eco88I	CYCGRG	3 cut(s)	150, 172, 692
EcoT22I	ATGCAT	1 cut(s)	672
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	5 cut(s)	79, 300, 409, 427, 553
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FaqI	GGGAC	3 cut(s)	93, 647, 699
FatI	CATG	5 cut(s)	75, 296, 405, 423, 549
FauI	CCCGC	1 cut(s)	623
FokI	GGATG	1 cut(s)	290
FspBI	CTAG	1 cut(s)	701
GsaI	CCCAGC	1 cut(s)	509
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	3 cut(s)	314, 450, 533
HgaI	GACGC	3 cut(s)	118, 157, 217
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	5 cut(s)	79, 300, 409, 427, 553
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	3 cut(s)	314, 450, 533
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	3 cut(s)	182, 216, 250
Hpy188III	TCNNGA	5 cut(s)	152, 172, 580, 692, 701
Hpy8I	GTNNAC	1 cut(s)	574
Hpy99I	CGWCG	2 cut(s)	134, 233
HpyAV	CCTTC	2 cut(s)	394, 577
HpyCH4III	ACNGT	3 cut(s)	243, 341, 607
HpyCH4V	TGCA	5 cut(s)	8, 56, 393, 670, 721
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	5 cut(s)	79, 300, 409, 427, 553
Kzo9I	GATC	6 cut(s)	138, 154, 177, 203, 310, 562
LmnI	GCTCC	2 cut(s)	165, 487
LpnPI	CCDG	5 cut(s)	327, 463, 491, 498, 546
LweI	GCATC	3 cut(s)	535, 657, 706
MaeI	CTAG	1 cut(s)	701
MalI	GATC	6 cut(s)	140, 156, 179, 205, 312, 564
MboI	GATC	6 cut(s)	138, 154, 177, 203, 310, 562
MboII	GAAGA	6 cut(s)	131, 198, 302, 406, 431, 680
MflI	RGATCY	4 cut(s)	138, 177, 203, 310
MluCI	AATT	3 cut(s)	62, 351, 377
MluI	ACGCGT	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	4 cut(s)	143, 239, 273, 497
MnlI	CCTC	4 cut(s)	168, 229, 361, 446
Mph1103I	ATGCAT	1 cut(s)	672
MseI	TTAA	4 cut(s)	32, 65, 470, 648
MspI	CCGG	3 cut(s)	314, 450, 533
Mva1269I	GAATGC	2 cut(s)	10, 261
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	6 cut(s)	138, 154, 177, 203, 310, 562
NlaIII	CATG	5 cut(s)	79, 300, 409, 427, 553
NlaIV	GGNNCC	1 cut(s)	179
NmeAIII	GCCGAG	1 cut(s)	285
NsiI	ATGCAT	1 cut(s)	672
NspI	RCATGY	2 cut(s)	300, 409
PaeR7I	CTCGAG	3 cut(s)	150, 172, 692
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	2 cut(s)	10, 261
PflMI	CCANNNNNTGG	2 cut(s)	555, 608
PinAI	ACCGGT	1 cut(s)	532
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PshBI	ATTAAT	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	505
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	246
PsuI	RGATCY	4 cut(s)	138, 177, 203, 310
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SaqAI	TTAA	4 cut(s)	32, 65, 470, 648
Sau3AI	GATC	6 cut(s)	138, 154, 177, 203, 310, 562
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	230
SetI	ASST	4 cut(s)	201, 221, 372, 457
SfaNI	GCATC	3 cut(s)	535, 657, 706
SfcI	CTRYAG	1 cut(s)	495
Sfr274I	CTCGAG	3 cut(s)	150, 172, 692
SinI	GGWCC	1 cut(s)	246
SlaI	CTCGAG	3 cut(s)	150, 172, 692
SmlI	CTYRAG	4 cut(s)	150, 172, 194, 692
SmoI	CTYRAG	4 cut(s)	150, 172, 194, 692
Sse9I	AATT	3 cut(s)	62, 351, 377
SsiI	CCGC	1 cut(s)	630
SspMI	CTAG	1 cut(s)	701
TaaI	ACNGT	3 cut(s)	243, 341, 607
TaqI	TCGA	4 cut(s)	69, 151, 173, 693
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	62, 351, 377
Tru1I	TTAA	4 cut(s)	32, 65, 470, 648
Tru9I	TTAA	4 cut(s)	32, 65, 470, 648
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	6 cut(s)	17, 88, 198, 370, 412, 431
TspRI	CASTG	1 cut(s)	63
Van91I	CCANNNNNTGG	2 cut(s)	555, 608
VpaK11BI	GGWCC	1 cut(s)	246
VspI	ATTAAT	1 cut(s)	65
XapI	RAATTY	1 cut(s)	377
XbaI	TCTAGA	1 cut(s)	700
XceI	RCATGY	2 cut(s)	300, 409
XhoI	CTCGAG	3 cut(s)	150, 172, 692
XspI	CTAG	1 cut(s)	701
Zsp2I	ATGCAT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.