Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005637

Physical Location & Seq

Genomic Coordinates Reverse (-)

21946906 .. 21949694

Gene Structure 2789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1258200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTCGTCGTCCGTACTGCCTTCGGCGAGAACAGAGCTCTTCAACCCAATTCATGAAACCAGGTTCATTGGCCTCACAAGACCATTTAATTGCAACAGAAGCAAATGTGTGATGAACAGGAGGAGTTTTGCTTTCAGAGGAGTTGCAGCTGCAGGACTCTCAGTCATGGGTTCTTCGTTGACTGCTCAGCCAGTTAAAGGTGTTGAAAGACTGGAATTTAAGCCGGAGGGGTACAATTTTTGGACATGGAGGGGTCACAAAATTCATTATGTGGTACAAGGAGAAGGGCCTCCAGTTGTTCTTATTCATGGTTTTGGTGCTTCTGCATTTCACTGGAGGTACAACATTCCAGAGTTGGCTAAAAAATATAAGGTTTATGCTATAGACTTGCTGGGGTTCGGGTGGAGTGAGAAAGCACTTGTTGATTATGATGCCATGGTTTGGAGAGATCAAGTGGAGGATTTCTTAAAGGAGATAGTGAAAGAACCGACAGTTTTAGTTGGAAACAGCCTCGGAGGTTTTACTGCTTTGGTTGCAGCAGCTGGGTTGCCTGAGCAAGTAGTTGGAGTTGCACTTCTGAATTCTGCGGGACAGTTTGGAAATCCTAATAGTGTAGCCAAGGAGTCTGAGGGGGAAACAGCCCTGCAAAAGTTCATCCTAAAGCCCCTGAAGGAAGTTTTCCAGCGAGTGGTACTTGGATTTCTGTTCTGGCAAGCAAAGCAACCAGCACGTGTTGAATCCGTCTTAAAGAGCGTCTATAAAAACACTGCCAATGTGGATGACTATCTGGTGGAGTCCATAATAATGCCAGCTGCTGACCCAAACGCTGGAGAAGTGTATTACAGATTGATGACCCGGTTCATGACAAACCAGACCAAGTACACTCTGGACAGCGTCTTAAGCAAGTTGTCTTGTCCACTGTTGTTGGTCTGGGGTGACTTGGATCCGTGGGTAGGTCCTGCCAAGGCTAACAGCATCAAAGCGTTTTATCCGAATACAACTTTGGTAAATCTGCAGGCCGGGCACTGTCCACACGATGAAGTTCCAGAGCTTGTCAATACGGCTTTATTAGATTGGTTATCAACTTCACCACTTAAAGCCTCTCTCCAAACAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

373

Amino Acids

41.24

Weight (kDa)

8.51

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	97 - 347	4.2e-25	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	99 - 353	1.5e-24	Alpha/beta hydrolase family
Hydrolase_4	PF12146	99 - 329	4e-15	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36530 AT4G36530
fragaria_vesca	FvH4_1g13000 FvH4_1g13000 FvH4_1g13000
malus_domestica	MD15G1258200.v1.1
prunus_persica	Prupe.7G157100_v2.0.a1
pyrus_communis	pycom02g11440 pycom15g22600
rosa_chinensis	RchiOBHm_Chr2g0101081 RchiOBHm_Chr4g0423241 RchiOBHm_Chr6g0260581
rosa_laevigata	RLG00000017050
rosa_multiflora	Rmu_sc0007698.1_g000013
rosa_roxburghii	Rroxscaffold_2G00095650 Rroxscaffold_2G00141570 Rroxscaffold_5G00364280
rosa_rugosa	Rorug02G0097000
rosa_samantha	Rh2AG143000 Rh2BG148100 Rh2CG149600 Rh2DG148600 Rh5DG463100 Rh6CG159800
rosa_wichuraiana	Rw2G003750 Rw2G011270 Rw3G026160 Rw7G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	441, 688, 827
AciI	CCGC	1 cut(s)	587
AclWI	GGATC	2 cut(s)	938, 951
AcsI	RAATTY	3 cut(s)	215, 261, 580
AcuI	CTGAAG	1 cut(s)	689
AcvI	CACGTG	1 cut(s)	731
AfaI	GTAC	6 cut(s)	15, 233, 276, 341, 693, 881
AfiI	CCNNNNNNNGG	5 cut(s)	197, 441, 688, 827, 953
AflII	CTTAAG	1 cut(s)	898
AflIII	ACRYGT	1 cut(s)	730
AgsI	TTSAA	3 cut(s)	43, 206, 737
AhdI	GACNNNNNGTC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	59
AjuI	GAANNNNNNNTTGG	2 cut(s)	986, 1018
AluBI	AGCT	5 cut(s)	37, 149, 542, 812, 1051
AluI	AGCT	5 cut(s)	37, 149, 542, 812, 1051
Alw21I	GWGCWC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	938, 951
AlwNI	CAGNNNCTG	2 cut(s)	542, 815
AoxI	GGCC	3 cut(s)	70, 287, 1017
ApeKI	GCWGC	5 cut(s)	146, 149, 536, 539, 812
ApoI	RAATTY	3 cut(s)	215, 261, 580
AspS9I	GGNCC	2 cut(s)	287, 956
AsuC2I	CCSGG	2 cut(s)	856, 1021
AsuHPI	GGTGA	2 cut(s)	947, 1080
AvaII	GGWCC	1 cut(s)	956
BaeGI	GKGCMC	1 cut(s)	1026
BamHI	GGATCC	1 cut(s)	943
BanII	GRGCYC	1 cut(s)	39
BbrPI	CACGTG	1 cut(s)	731
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	5 cut(s)	136, 158, 548, 551, 799
BceAI	ACGGC	1 cut(s)	1077
BciT130I	CCWGG	1 cut(s)	61
BcnI	CCSGG	2 cut(s)	856, 1021
BfmI	CTRYAG	3 cut(s)	150, 381, 1013
BfrI	CTTAAG	1 cut(s)	898
BisI	GCNGC	5 cut(s)	147, 150, 537, 540, 813
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	5 cut(s)	148, 151, 538, 541, 814
Bme1390I	CCNGG	3 cut(s)	61, 856, 1021
Bme18I	GGWCC	1 cut(s)	956
BmeRI	GACNNNNNGTC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	287, 956
BmiI	GGNNCC	1 cut(s)	945
BmrFI	CCNGG	3 cut(s)	61, 856, 1021
BmsI	GCATC	2 cut(s)	421, 984
BpmI	CTGGAG	3 cut(s)	276, 355, 849
Bpu10I	CCTNAGC	1 cut(s)	552
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuMI	CCSGG	2 cut(s)	856, 1021
BsaAI	YACGTR	1 cut(s)	731
BsaBI	GATNNNNATC	1 cut(s)	783
BsaJI	CCNNGG	5 cut(s)	435, 511, 618, 947, 963
Bsc4I	CCNNNNNNNGG	5 cut(s)	197, 441, 688, 827, 953
Bse1I	ACTGG	4 cut(s)	191, 216, 293, 338
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	1 cut(s)	61
BseDI	CCNNGG	5 cut(s)	435, 511, 618, 947, 963
BseGI	GGATG	2 cut(s)	654, 784
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	5 cut(s)	197, 441, 688, 827, 953
BseMII	CTCAG	4 cut(s)	174, 200, 543, 618
BseNI	ACTGG	4 cut(s)	191, 216, 293, 338
BseRI	GAGGAG	2 cut(s)	136, 153
BseSI	GKGCMC	1 cut(s)	1026
BseXI	GCAGC	5 cut(s)	136, 158, 548, 551, 799
BseYI	CCCAGC	2 cut(s)	391, 542
BshFI	GGCC	3 cut(s)	72, 289, 1019
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	3 cut(s)	224, 856, 1020
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	5 cut(s)	197, 441, 688, 827, 953
BsmFI	GGGAC	1 cut(s)	603
BsnI	GGCC	3 cut(s)	72, 289, 1019
Bsp1286I	GDGCHC	2 cut(s)	39, 1026
Bsp143I	GATC	2 cut(s)	448, 943
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	1 cut(s)	587
BspANI	GGCC	3 cut(s)	72, 289, 1019
BspCNI	CTCAG	4 cut(s)	173, 199, 544, 619
BspHI	TCATGA	2 cut(s)	52, 861
BspLI	GGNNCC	1 cut(s)	945
BspMAI	CTGCAG	2 cut(s)	154, 1017
BspPI	GGATC	2 cut(s)	938, 951
BspQI	GCTCTTC	1 cut(s)	44
BspTI	CTTAAG	1 cut(s)	898
BsrI	ACTGG	4 cut(s)	191, 216, 293, 338
BssECI	CCNNGG	5 cut(s)	435, 511, 618, 947, 963
BssMI	GATC	2 cut(s)	448, 943
BssT1I	CCWWGG	3 cut(s)	435, 618, 963
Bst2UI	CCWGG	1 cut(s)	61
Bst4CI	ACNGT	5 cut(s)	493, 594, 921, 1028, 1114
Bst6I	CTCTTC	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	898
BstBAI	YACGTR	1 cut(s)	731
BstC8I	GCNNGC	3 cut(s)	714, 810, 1017
BstDEI	CTNAG	4 cut(s)	160, 186, 552, 627
BstDSI	CCRYGG	2 cut(s)	435, 947
BstF5I	GGATG	2 cut(s)	654, 784
BstKTI	GATC	2 cut(s)	451, 946
BstMBI	GATC	2 cut(s)	448, 943
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 533, 718, 900, 1021
BstNI	CCWGG	1 cut(s)	61
BstSCI	CCNGG	3 cut(s)	59, 854, 1019
BstSFI	CTRYAG	3 cut(s)	150, 381, 1013
BstSLI	GKGCMC	1 cut(s)	1026
BstV1I	GCAGC	5 cut(s)	136, 158, 548, 551, 799
BstX2I	RGATCY	1 cut(s)	943
BstYI	RGATCY	1 cut(s)	943
BsuRI	GGCC	3 cut(s)	72, 289, 1019
BtgI	CCRYGG	2 cut(s)	435, 947
BtsCI	GGATG	2 cut(s)	654, 784
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	4 cut(s)	331, 765, 917, 1024
Cac8I	GCNNGC	3 cut(s)	714, 810, 1017
CaiI	CAGNNNCTG	2 cut(s)	542, 815
CciI	TCATGA	2 cut(s)	52, 861
Cfr13I	GGNCC	2 cut(s)	287, 956
CseI	GACGC	2 cut(s)	742, 883
CsiI	ACCWGGT	1 cut(s)	59
Csp6I	GTAC	6 cut(s)	14, 232, 275, 340, 692, 880
CspCI	CAANNNNNGTGG	2 cut(s)	906, 941
CviAII	CATG	6 cut(s)	53, 166, 246, 308, 436, 862
CviQI	GTAC	6 cut(s)	14, 232, 275, 340, 692, 880
DdeI	CTNAG	4 cut(s)	160, 186, 552, 627
DpnI	GATC	2 cut(s)	450, 945
DpnII	GATC	2 cut(s)	448, 943
DriI	GACNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	44
Eam1105I	GACNNNNNGTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	3 cut(s)	435, 618, 963
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	956
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	689
Eco72I	CACGTG	1 cut(s)	731
EcoICRI	GAGCTC	1 cut(s)	37
EcoO109I	RGGNCCY	2 cut(s)	287, 956
EcoRI	GAATTC	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	3 cut(s)	435, 618, 963
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	3 cut(s)	435, 618, 963
FaeI	CATG	6 cut(s)	56, 169, 249, 311, 439, 865
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	6 cut(s)	52, 165, 245, 307, 435, 861
FauI	CCCGC	1 cut(s)	580
Fnu4HI	GCNGC	5 cut(s)	147, 150, 537, 540, 813
FokI	GGATG	2 cut(s)	641, 791
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	5 cut(s)	147, 150, 537, 540, 813
GluI	GCNGC	5 cut(s)	147, 150, 537, 540, 813
GsaI	CCCAGC	2 cut(s)	395, 546
GsuI	CTGGAG	3 cut(s)	276, 355, 849
HaeIII	GGCC	3 cut(s)	72, 289, 1019
HapII	CCGG	3 cut(s)	224, 856, 1020
HgaI	GACGC	2 cut(s)	742, 883
Hin1II	CATG	6 cut(s)	56, 169, 249, 311, 439, 865
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	4 cut(s)	156, 623, 737, 794
HpaII	CCGG	3 cut(s)	224, 856, 1020
HphI	GGTGA	2 cut(s)	947, 1080
Hpy166II	GTNNAC	4 cut(s)	180, 882, 917, 1031
Hpy188I	TCNGA	6 cut(s)	137, 515, 579, 628, 993, 1118
Hpy188III	TCNNGA	5 cut(s)	53, 350, 862, 887, 1046
Hpy8I	GTNNAC	4 cut(s)	180, 882, 917, 1031
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	30, 278, 664
HpyCH4III	ACNGT	5 cut(s)	493, 594, 921, 1028, 1114
HpyCH4IV	ACGT	1 cut(s)	730
HpyCH4V	TGCA	8 cut(s)	93, 146, 152, 326, 536, 572, 646, 1015
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 533, 718, 900, 1021
HpyF3I	CTNAG	4 cut(s)	160, 186, 552, 627
HpySE526I	ACGT	1 cut(s)	730
Hsp92II	CATG	6 cut(s)	56, 169, 249, 311, 439, 865
Kzo9I	GATC	2 cut(s)	448, 943
LguI	GCTCTTC	1 cut(s)	44
Lsp1109I	GCAGC	5 cut(s)	136, 158, 548, 551, 799
LweI	GCATC	2 cut(s)	421, 984
MabI	ACCWGGT	1 cut(s)	59
MaeII	ACGT	1 cut(s)	730
MaeIII	GTNAC	2 cut(s)	254, 935
MalI	GATC	2 cut(s)	450, 945
MboI	GATC	2 cut(s)	448, 943
MboII	GAAGA	2 cut(s)	31, 165
MflI	RGATCY	1 cut(s)	943
MhlI	GDGCHC	2 cut(s)	39, 1026
MluCI	AATT	6 cut(s)	48, 88, 215, 235, 261, 580
MlyI	GAGTC	3 cut(s)	150, 632, 803
MmeI	TCCRAC	2 cut(s)	481, 544
MseI	TTAA	7 cut(s)	87, 195, 219, 467, 746, 899, 1095
MslI	CAYNNNNRTG	1 cut(s)	803
MspA1I	CMGCKG	3 cut(s)	149, 542, 812
MspCI	CTTAAG	1 cut(s)	898
MspI	CCGG	3 cut(s)	224, 856, 1020
MspR9I	CCNGG	3 cut(s)	61, 856, 1021
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	5 cut(s)	99, 533, 718, 900, 1021
NciI	CCSGG	2 cut(s)	856, 1021
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	2 cut(s)	448, 943
NlaIII	CATG	6 cut(s)	56, 169, 249, 311, 439, 865
NlaIV	GGNNCC	1 cut(s)	945
NmuCI	GTSAC	2 cut(s)	254, 935
PagI	TCATGA	2 cut(s)	52, 861
PciSI	GCTCTTC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	737
PflFI	GACNNNGTC	1 cut(s)	893
PflMI	CCANNNNNTGG	3 cut(s)	441, 688, 827
PkrI	GCNGC	5 cut(s)	148, 151, 538, 541, 814
PleI	GAGTC	3 cut(s)	150, 631, 802
PmaCI	CACGTG	1 cut(s)	731
PmlI	CACGTG	1 cut(s)	731
PpsI	GAGTC	3 cut(s)	150, 631, 802
Ppu21I	YACGTR	1 cut(s)	731
PpuMI	RGGWCCY	1 cut(s)	956
Psp124BI	GAGCTC	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	956
Psp6I	CCWGG	1 cut(s)	59
PspCI	CACGTG	1 cut(s)	731
PspFI	CCCAGC	2 cut(s)	391, 542
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	945
PspPI	GGNCC	2 cut(s)	287, 956
PspPPI	RGGWCCY	1 cut(s)	956
PstI	CTGCAG	2 cut(s)	154, 1017
PstNI	CAGNNNCTG	2 cut(s)	542, 815
PsuI	RGATCY	1 cut(s)	943
PsyI	GACNNNGTC	1 cut(s)	893
PvuII	CAGCTG	3 cut(s)	149, 542, 812
RsaI	GTAC	6 cut(s)	15, 233, 276, 341, 693, 881
RsaNI	GTAC	6 cut(s)	14, 232, 275, 340, 692, 880
RseI	CAYNNNNRTG	1 cut(s)	803
SacI	GAGCTC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	7 cut(s)	87, 195, 219, 467, 746, 899, 1095
SatI	GCNGC	5 cut(s)	147, 150, 537, 540, 813
Sau3AI	GATC	2 cut(s)	448, 943
Sau96I	GGNCC	2 cut(s)	287, 956
SchI	GAGTC	3 cut(s)	150, 632, 803
ScrFI	CCNGG	3 cut(s)	61, 856, 1021
SduI	GDGCHC	2 cut(s)	39, 1026
SexAI	ACCWGGT	1 cut(s)	59
SfaNI	GCATC	2 cut(s)	421, 984
SfcI	CTRYAG	3 cut(s)	150, 381, 1013
SinI	GGWCC	1 cut(s)	956
SmiMI	CAYNNNNRTG	1 cut(s)	803
SmlI	CTYRAG	1 cut(s)	898
SmoI	CTYRAG	1 cut(s)	898
Sse9I	AATT	6 cut(s)	48, 88, 215, 235, 261, 580
SsiI	CCGC	1 cut(s)	587
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	3 cut(s)	59, 854, 1019
StyI	CCWWGG	3 cut(s)	435, 618, 963
TaaI	ACNGT	5 cut(s)	493, 594, 921, 1028, 1114
TaiI	ACGT	1 cut(s)	733
TasI	AATT	6 cut(s)	48, 88, 215, 235, 261, 580
TatI	WGTACW	1 cut(s)	879
TfiI	GAWTC	1 cut(s)	737
Tru1I	TTAA	7 cut(s)	87, 195, 219, 467, 746, 899, 1095
Tru9I	TTAA	7 cut(s)	87, 195, 219, 467, 746, 899, 1095
TscAI	CASTG	4 cut(s)	338, 772, 924, 1031
TseFI	GTSAC	2 cut(s)	254, 935
TseI	GCWGC	5 cut(s)	146, 149, 536, 539, 812
Tsp45I	GTSAC	2 cut(s)	254, 935
TspDTI	ATGAA	9 cut(s)	41, 55, 69, 128, 254, 296, 643, 850, 1053
TspGWI	ACGGA	2 cut(s)	730, 936
TspRI	CASTG	4 cut(s)	338, 772, 924, 1031
Tth111I	GACNNNGTC	1 cut(s)	893
Van91I	CCANNNNNTGG	3 cut(s)	441, 688, 827
Vha464I	CTTAAG	1 cut(s)	898
VpaK11BI	GGWCC	1 cut(s)	956
XapI	RAATTY	3 cut(s)	215, 261, 580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.