Rh5DG463100

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005637
Physical Location & Seq
Forward (+)
73412065 .. 73428310
16246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG463100.1

Sequence Viewer

Length: 1104 bp
ATGGCTGCTACGTTGAGAAAGCTTGATGATTTAGTTGGGTTTTGCTGCAGGGGACAAGTTGAGAAGGAGTTCAAGGTTGAAGTGGAAGCAATTGGTCGTGTTCGCCATAAGAATTTAGTGAGGTTGCTTGGCTATTGTGCTGAAGGTGCTCACAGGATGCTTGTGTATGAGTATGTTGACAACGGAAACTTGGAACAATGGCTTCATGGAGATGTCGGGCCTCTCAGCCCTCTGACATGGGAGAATTGCATGAATATAATGCTTGGGACAGCGAAAGGGTATAACATACCAGAGTTGGCTAAAAGATACAAGGTTTATGCTATAGACTTGCTGGGCTTCGGTTGGAGTGAAAAAGCACTGGTTGAATATGATGCCATGATTTGGAAAGATCAAGTAGTGGACTTCTTGAAGGAGATAGTGAAAGAACCAACAGTTTTGGTTGGAAATAGCCTAGGAGGTTTTACTGCTTTGGTTGCAGCAGTTGGATTGCCTGAGCAAGTAGTTGGTGTTGCACTATTGAATTCGGCAGGACAGTTTGGAAATGCAAATAGTGAACCTGAGAAGTCTGACGAGGAAACAGTCCTACAGAAGTTCAACATAAAGCCACTGAAGGAAGTTTTCCAGCGAGTAGTACTTGGATTTTTATTCTGGCAAGCAAAGCAGCCTGCTCGCATTGAATCCGTTTTAAAGAGTGTGTACAAAAATACCTCCAATGTGGATGACTATCTGGTGGATTCCATAACAATGCCAGCAGCTGACCCCAATGCCGGAGAAGTCTACTACAGACTCATTGGCTTTGGCATGAAAACTCATAAAGAACATTTCAAAGTTTCTAGTTTCTTGAAATTATATTGCATTGACATTCCATTGAAGCGGGGCAGGGCGATTGTGCAGGTTGTGACCCATTACAATGACCCGAATACACTTGCTGATGTGAGCTGTGGATTGGGTGAGGCTATGGTTGGACTGAATTTGAATGATGCCAAGAAAAGAGATCTGAGTCAATTTGTTGCTGTTCTTGAGGAGAGCACTGTTCTGGAGGAGAATGCAGCTCTAGCAGAGAACGTTGCTCCTGAGGACTACTTTCAAGAGCCTGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

367

Amino Acids

40.87

Weight (kDa)

5.27

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 21 - 94 4.7e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 22 - 89 4.8e-06 Protein kinase domain
Abhydrolase_6 PF12697 68 - 179 1.2e-11 Alpha/beta hydrolase family
Abhydrolase_1 PF00561 96 - 199 3.6e-12 alpha/beta hydrolase fold
Hydrolase_4 PF12146 102 - 192 1.6e-06 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 883
AccB7I CCANNNNNTGG 1 cut(s) 381
AccI GTMKAC 1 cut(s) 777
AciI CCGC 1 cut(s) 874
AclI AACGTT 1 cut(s) 1065
AcsI RAATTY 3 cut(s) 112, 520, 970
AcuI CTGAAG 2 cut(s) 162, 629
AfaI GTAC 2 cut(s) 633, 698
AfiI CCNNNNNNNGG 2 cut(s) 381, 767
AluBI AGCT 4 cut(s) 22, 755, 939, 1052
AluI AGCT 4 cut(s) 22, 755, 939, 1052
Alw21I GWGCWC 2 cut(s) 151, 1031
AlwNI CAGNNNCTG 1 cut(s) 755
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 6 cut(s) 5, 45, 476, 661, 752, 1049
ApoI RAATTY 3 cut(s) 112, 520, 970
Asp700I GAANNNNTTC 1 cut(s) 68
AspA2I CCTAGG 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 962
AvrII CCTAGG 1 cut(s) 451
AxyI CCTNAGG 1 cut(s) 1074
Bbv12I GWGCWC 2 cut(s) 151, 1031
BbvI GCAGC 5 cut(s) 32, 488, 673, 764, 1061
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BfaI CTAG 3 cut(s) 452, 834, 1055
BfmI CTRYAG 4 cut(s) 46, 321, 584, 781
BfuAI ACCTGC 1 cut(s) 883
BglII AGATCT 1 cut(s) 994
BisI GCNGC 6 cut(s) 6, 46, 477, 662, 753, 1050
BlnI CCTAGG 1 cut(s) 451
BlsI GCNGC 6 cut(s) 7, 47, 478, 663, 754, 1051
BmcAI AGTACT 1 cut(s) 633
BmgT120I GGNCC 1 cut(s) 218
BmsI GCATC 3 cut(s) 147, 361, 970
BpmI CTGGAG 1 cut(s) 1058
Bpu10I CCTNAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 1040
BsaBI GATNNNNATC 1 cut(s) 723
BsaJI CCNNGG 1 cut(s) 451
Bsc4I CCNNNNNNNGG 2 cut(s) 381, 767
Bse1I ACTGG 1 cut(s) 363
Bse21I CCTNAGG 1 cut(s) 1074
Bse8I GATNNNNATC 1 cut(s) 723
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 2 cut(s) 162, 724
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 2 cut(s) 381, 767
BseMII CTCAG 5 cut(s) 238, 483, 549, 989, 1065
BseNI ACTGG 1 cut(s) 363
BseRI GAGGAG 2 cut(s) 1037, 1055
BseXI GCAGC 5 cut(s) 32, 488, 673, 764, 1061
BseYI CCCAGC 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 911
BshFI GGCC 1 cut(s) 220
BsiHKAI GWGCWC 2 cut(s) 151, 1031
BsiSI CCGG 1 cut(s) 768
BslFI GGGAC 2 cut(s) 66, 280
BslI CCNNNNNNNGG 2 cut(s) 381, 767
BsmFI GGGAC 2 cut(s) 66, 280
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 1 cut(s) 220
Bsp1286I GDGCHC 2 cut(s) 151, 1031
Bsp1407I TGTACA 1 cut(s) 696
Bsp143I GATC 2 cut(s) 388, 994
BspACI CCGC 1 cut(s) 874
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 5 cut(s) 237, 484, 550, 990, 1066
BspMAI CTGCAG 1 cut(s) 50
BspMI ACCTGC 1 cut(s) 883
BsrGI TGTACA 1 cut(s) 696
BsrI ACTGG 1 cut(s) 363
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 2 cut(s) 388, 994
BssT1I CCWWGG 1 cut(s) 451
Bst4CI ACNGT 4 cut(s) 433, 534, 580, 1033
BstAUI TGTACA 1 cut(s) 696
BstC8I GCNNGC 5 cut(s) 654, 666, 670, 750, 1095
BstDEI CTNAG 5 cut(s) 224, 492, 558, 998, 1074
BstF5I GGATG 2 cut(s) 162, 724
BstKTI GATC 2 cut(s) 391, 997
BstMBI GATC 2 cut(s) 388, 994
BstMWI GCNNNNNNNGC 4 cut(s) 146, 473, 658, 1055
BstSFI CTRYAG 4 cut(s) 46, 321, 584, 781
BstV1I GCAGC 5 cut(s) 32, 488, 673, 764, 1061
BstX2I RGATCY 1 cut(s) 994
BstYI RGATCY 1 cut(s) 994
Bsu36I CCTNAGG 1 cut(s) 1074
BsuRI GGCC 1 cut(s) 220
BtsCI GGATG 2 cut(s) 162, 724
BtsIMutI CAGTG 3 cut(s) 356, 605, 1029
BveI ACCTGC 1 cut(s) 883
Cac8I GCNNGC 5 cut(s) 654, 666, 670, 750, 1095
CaiI CAGNNNCTG 1 cut(s) 755
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 632, 697
CviAII CATG 5 cut(s) 206, 237, 250, 376, 802
CviQI GTAC 2 cut(s) 632, 697
DdeI CTNAG 5 cut(s) 224, 492, 558, 998, 1074
DpnI GATC 2 cut(s) 390, 996
DpnII GATC 2 cut(s) 388, 994
DraI TTTAAA 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 451
Eco57I CTGAAG 2 cut(s) 162, 629
Eco81I CCTNAGG 1 cut(s) 1074
EcoRI GAATTC 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 5 cut(s) 209, 240, 253, 379, 805
FaqI GGGAC 2 cut(s) 66, 280
FatI CATG 5 cut(s) 205, 236, 249, 375, 801
FauI CCCGC 1 cut(s) 867
FblI GTMKAC 1 cut(s) 777
Fnu4HI GCNGC 6 cut(s) 6, 46, 477, 662, 753, 1050
FokI GGATG 2 cut(s) 169, 731
Fsp4HI GCNGC 6 cut(s) 6, 46, 477, 662, 753, 1050
FspBI CTAG 3 cut(s) 452, 834, 1055
GluI GCNGC 6 cut(s) 6, 46, 477, 662, 753, 1050
GsaI CCCAGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 1058
HaeIII GGCC 1 cut(s) 220
HapII CCGG 1 cut(s) 768
Hin1II CATG 5 cut(s) 209, 240, 253, 379, 805
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 4 cut(s) 677, 734, 786, 1000
HpaII CCGG 1 cut(s) 768
HphI GGTGA 1 cut(s) 962
Hpy166II GTNNAC 5 cut(s) 178, 400, 554, 697, 778
Hpy188I TCNGA 3 cut(s) 234, 568, 999
Hpy188III TCNNGA 6 cut(s) 406, 841, 1019, 1037, 1073, 1088
Hpy8I GTNNAC 5 cut(s) 178, 400, 554, 697, 778
HpyAV CCTTC 4 cut(s) 58, 137, 403, 604
HpyCH4III ACNGT 4 cut(s) 433, 534, 580, 1033
HpyCH4IV ACGT 2 cut(s) 11, 1065
HpyCH4V TGCA 9 cut(s) 48, 249, 476, 512, 545, 855, 892, 1049, 1097
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 473, 658, 1055
HpyF3I CTNAG 5 cut(s) 224, 492, 558, 998, 1074
HpySE526I ACGT 2 cut(s) 11, 1065
Hsp92II CATG 5 cut(s) 209, 240, 253, 379, 805
Kzo9I GATC 2 cut(s) 388, 994
LmnI GCTCC 1 cut(s) 1075
Lsp1109I GCAGC 5 cut(s) 32, 488, 673, 764, 1061
LweI GCATC 3 cut(s) 147, 361, 970
MaeI CTAG 3 cut(s) 452, 834, 1055
MaeII ACGT 2 cut(s) 11, 1065
MaeIII GTNAC 1 cut(s) 898
MalI GATC 2 cut(s) 390, 996
MboI GATC 2 cut(s) 388, 994
MfeI CAATTG 1 cut(s) 90
MflI RGATCY 1 cut(s) 994
MhlI GDGCHC 2 cut(s) 151, 1031
MluCI AATT 7 cut(s) 90, 112, 244, 520, 845, 970, 1004
MlyI GAGTC 2 cut(s) 780, 1009
MmeI TCCRAC 4 cut(s) 323, 421, 463, 943
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 1 cut(s) 686
MslI CAYNNNNRTG 3 cut(s) 210, 743, 909
MspA1I CMGCKG 1 cut(s) 755
MspI CCGG 1 cut(s) 768
MunI CAATTG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 1051
MwoI GCNNNNNNNGC 4 cut(s) 146, 473, 658, 1055
NdeII GATC 2 cut(s) 388, 994
NlaIII CATG 5 cut(s) 209, 240, 253, 379, 805
NmuCI GTSAC 1 cut(s) 898
PctI GAATGC 1 cut(s) 1051
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 677, 734
PflMI CCANNNNNTGG 1 cut(s) 381
PkrI GCNGC 6 cut(s) 7, 47, 478, 663, 754, 1051
PleI GAGTC 2 cut(s) 780, 1008
PpsI GAGTC 2 cut(s) 780, 1008
Psp1406I AACGTT 1 cut(s) 1065
PspFI CCCAGC 1 cut(s) 331
PspPI GGNCC 1 cut(s) 218
PstI CTGCAG 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 755
PsuI RGATCY 1 cut(s) 994
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 2 cut(s) 633, 698
RsaNI GTAC 2 cut(s) 632, 697
RseI CAYNNNNRTG 3 cut(s) 210, 743, 909
SaqAI TTAA 1 cut(s) 686
SatI GCNGC 6 cut(s) 6, 46, 477, 662, 753, 1050
Sau3AI GATC 2 cut(s) 388, 994
Sau96I GGNCC 1 cut(s) 218
ScaI AGTACT 1 cut(s) 633
SchI GAGTC 2 cut(s) 780, 1009
SduI GDGCHC 2 cut(s) 151, 1031
SfaNI GCATC 3 cut(s) 147, 361, 970
SfcI CTRYAG 4 cut(s) 46, 321, 584, 781
SmiMI CAYNNNNRTG 3 cut(s) 210, 743, 909
SmlI CTYRAG 1 cut(s) 1019
SmoI CTYRAG 1 cut(s) 1019
Sse9I AATT 7 cut(s) 90, 112, 244, 520, 845, 970, 1004
SsiI CCGC 1 cut(s) 874
SspMI CTAG 3 cut(s) 452, 834, 1055
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 4 cut(s) 433, 534, 580, 1033
TaiI ACGT 2 cut(s) 14, 1068
TasI AATT 7 cut(s) 90, 112, 244, 520, 845, 970, 1004
TatI WGTACW 2 cut(s) 631, 696
TfiI GAWTC 2 cut(s) 677, 734
Tru1I TTAA 1 cut(s) 686
Tru9I TTAA 1 cut(s) 686
TscAI CASTG 3 cut(s) 363, 612, 1036
TseFI GTSAC 1 cut(s) 898
TseI GCWGC 6 cut(s) 5, 45, 476, 661, 752, 1049
Tsp45I GTSAC 1 cut(s) 898
TspDTI ATGAA 3 cut(s) 194, 266, 818
TspGWI ACGGA 2 cut(s) 198, 670
TspRI CASTG 3 cut(s) 363, 612, 1036
Van91I CCANNNNNTGG 1 cut(s) 381
XapI RAATTY 3 cut(s) 112, 520, 970
XmaJI CCTAGG 1 cut(s) 451
XmiI GTMKAC 1 cut(s) 777
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 3 cut(s) 452, 834, 1055
ZrmI AGTACT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.