Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005637

Physical Location & Seq

Genomic Coordinates Reverse (-)

12739506 .. 12742021

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG148100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGTTATTCTAAGGGTGGCTGTATGTGTAGTATCTTTCATGCTGTCCGATCTCCCACTTAACAGGTACAACATACCAGAGTTGGCTAAAAAGTACAAGGTTTATGCTGTAGACTTGCTGGGCTTCGGTTGGAGTGAAAAAGCACTGGTTGAATATGATGCCATGATTTGGAAAGATCAAGTAGTGGACTTCTTGAAGGAGATAGTGAAAGAACCAACAGTTTTGGTTGGAAATAGCCTAGGAGGTTTTACTGCTTTGGTTGCAGCAGTTGGATTGCCTGAGCAAGTAGTTGGAGTTGCACTATTGAATTCAGCAGGACAGTTTGGAAATGCAAATAGTGAACCTGAGAAGTCTGACGAGGAAACAGTCCTACAGAAGTTCATCATAAAGCCACTGAAGGAAGTTTTCCAGCGAGCAGTACTTGGATTTTTATTCTGGCAAGCAAAGCAGCCCGCTCGCATTGAATCCGTTTTAAAGAGTGTGTACAAAAATACCTCCAATGTGGATGACTATCTGGTAGAATCCATAACAATGCCAGCAGCTGACCCCAATGCCGGAGAAGTCTACTACAGATTGATGACGCGGTTCATGTCAAACCAGACCAAGTATACTCTTGACAGTATCCTAAGCAAGATGTCTTGCCCATTGTTGTTGCTCTGGGGTGACTTGGACCCATGGGTAGGTCCTGCCAAGGCTAACAGAATCAAAGAGTTCTATCCAAATTCGACTTTGGTAAATTTGCAGGCTGGCCACTGTCCACACGATGAAGTTCCAGAGCTTGTAAACAAGTCTTTATTAGAATGGCTATCAACTTCGACAGCTGAAGCCTCTCTCCAAACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

281

Amino Acids

31.3

Weight (kDa)

5.14

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	24 - 256	4e-16	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	26 - 262	6e-17	Alpha/beta hydrolase family
Hydrolase_4	PF12146	30 - 238	4.2e-11	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36530 AT4G36530
fragaria_vesca	FvH4_1g13000 FvH4_1g13000 FvH4_1g13000
malus_domestica	MD15G1258200.v1.1
prunus_persica	Prupe.7G157100_v2.0.a1
pyrus_communis	pycom02g11440 pycom15g22600
rosa_chinensis	RchiOBHm_Chr2g0101081 RchiOBHm_Chr4g0423241 RchiOBHm_Chr6g0260581
rosa_laevigata	RLG00000017050
rosa_multiflora	Rmu_sc0007698.1_g000013
rosa_roxburghii	Rroxscaffold_2G00095650 Rroxscaffold_2G00141570 Rroxscaffold_5G00364280
rosa_rugosa	Rorug02G0097000
rosa_samantha	Rh2AG143000 Rh2BG148100 Rh2CG149600 Rh2DG148600 Rh5DG463100 Rh6CG159800
rosa_wichuraiana	Rw2G003750 Rw2G011270 Rw3G026160 Rw7G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	168
AccBSI	CCGCTC	1 cut(s)	455
AccI	GTMKAC	3 cut(s)	111, 564, 608
AccII	CGCG	1 cut(s)	583
AciI	CCGC	2 cut(s)	453, 583
AcoI	YGGCCR	1 cut(s)	748
AcsI	RAATTY	3 cut(s)	307, 721, 736
AcuI	CTGAAG	2 cut(s)	416, 843
AfaI	GTAC	4 cut(s)	68, 95, 420, 485
AfiI	CCNNNNNNNGG	3 cut(s)	168, 554, 680
AgsI	TTSAA	4 cut(s)	152, 196, 307, 464
AluBI	AGCT	3 cut(s)	542, 778, 821
AluI	AGCT	3 cut(s)	542, 778, 821
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	1 cut(s)	748
ApeKI	GCWGC	3 cut(s)	263, 448, 539
ApoI	RAATTY	3 cut(s)	307, 721, 736
AspA2I	CCTAGG	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	670, 683
AsuHPI	GGTGA	1 cut(s)	674
AvaII	GGWCC	2 cut(s)	670, 683
AvrII	CCTAGG	1 cut(s)	238
BalI	TGGCCA	1 cut(s)	750
BbvI	GCAGC	3 cut(s)	275, 460, 551
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciVI	GTATCC	1 cut(s)	632
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	3 cut(s)	108, 371, 568
BfuI	GTATCC	1 cut(s)	632
BisI	GCNGC	3 cut(s)	264, 449, 540
BlnI	CCTAGG	1 cut(s)	238
BlsI	GCNGC	3 cut(s)	265, 450, 541
BmcAI	AGTACT	1 cut(s)	420
Bme18I	GGWCC	2 cut(s)	670, 683
BmgT120I	GGNCC	2 cut(s)	670, 683
BmiI	GGNNCC	1 cut(s)	672
BmsI	GCATC	1 cut(s)	148
Bpu10I	CCTNAGC	2 cut(s)	279, 626
BsaBI	GATNNNNATC	1 cut(s)	510
BsaJI	CCNNGG	3 cut(s)	238, 674, 690
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 554, 680
Bse1I	ACTGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	510
BseDI	CCNNGG	3 cut(s)	238, 674, 690
BseGI	GGATG	1 cut(s)	511
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	168, 554, 680
BseMII	CTCAG	2 cut(s)	270, 336
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	3 cut(s)	275, 460, 551
BseYI	CCCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	583
BshFI	GGCC	1 cut(s)	750
BsiSI	CCGG	1 cut(s)	555
BslI	CCNNNNNNNGG	3 cut(s)	168, 554, 680
BsnI	GGCC	1 cut(s)	750
Bsp1407I	TGTACA	1 cut(s)	483
Bsp143I	GATC	2 cut(s)	49, 175
Bsp19I	CCATGG	1 cut(s)	674
BspACI	CCGC	2 cut(s)	453, 583
BspANI	GGCC	1 cut(s)	750
BspCNI	CTCAG	2 cut(s)	271, 337
BspFNI	CGCG	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	672
BsrBI	CCGCTC	1 cut(s)	455
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	3 cut(s)	238, 674, 690
BssMI	GATC	2 cut(s)	49, 175
BssNAI	GTATAC	1 cut(s)	609
BssT1I	CCWWGG	3 cut(s)	238, 674, 690
Bst1107I	GTATAC	1 cut(s)	609
Bst4CI	ACNGT	6 cut(s)	220, 321, 367, 620, 755, 841
BstAUI	TGTACA	1 cut(s)	483
BstC8I	GCNNGC	7 cut(s)	414, 441, 453, 457, 537, 744, 748
BstDEI	CTNAG	4 cut(s)	11, 279, 345, 626
BstDSI	CCRYGG	1 cut(s)	674
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	1 cut(s)	583
BstKTI	GATC	2 cut(s)	52, 178
BstMBI	GATC	2 cut(s)	49, 175
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 445
BstSFI	CTRYAG	3 cut(s)	108, 371, 568
BstUI	CGCG	1 cut(s)	583
BstV1I	GCAGC	3 cut(s)	275, 460, 551
BstZ17I	GTATAC	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	1 cut(s)	750
BtgI	CCRYGG	1 cut(s)	674
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	3 cut(s)	143, 392, 751
Cac8I	GCNNGC	7 cut(s)	414, 441, 453, 457, 537, 744, 748
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	670, 683
CseI	GACGC	1 cut(s)	589
Csp6I	GTAC	4 cut(s)	67, 94, 419, 484
CviAII	CATG	4 cut(s)	40, 163, 589, 675
CviQI	GTAC	4 cut(s)	67, 94, 419, 484
DdeI	CTNAG	4 cut(s)	11, 279, 345, 626
DpnI	GATC	2 cut(s)	51, 177
DpnII	GATC	2 cut(s)	49, 175
DraI	TTTAAA	1 cut(s)	474
EaeI	YGGCCR	1 cut(s)	748
Eco130I	CCWWGG	3 cut(s)	238, 674, 690
Eco47I	GGWCC	2 cut(s)	670, 683
Eco57I	CTGAAG	2 cut(s)	416, 843
EcoO109I	RGGNCCY	1 cut(s)	683
EcoRI	GAATTC	1 cut(s)	307
EcoT14I	CCWWGG	3 cut(s)	238, 674, 690
ErhI	CCWWGG	3 cut(s)	238, 674, 690
FaeI	CATG	4 cut(s)	43, 166, 592, 678
FatI	CATG	4 cut(s)	39, 162, 588, 674
FauI	CCCGC	1 cut(s)	460
FblI	GTMKAC	3 cut(s)	111, 564, 608
Fnu4HI	GCNGC	3 cut(s)	264, 449, 540
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	3 cut(s)	264, 449, 540
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	3 cut(s)	264, 449, 540
GsaI	CCCAGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	750
HapII	CCGG	1 cut(s)	555
HgaI	GACGC	1 cut(s)	589
Hin1II	CATG	4 cut(s)	43, 166, 592, 678
HinfI	GANTC	3 cut(s)	464, 521, 702
HpaII	CCGG	1 cut(s)	555
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	8 cut(s)	112, 187, 341, 484, 565, 609, 758, 784
Hpy188I	TCNGA	2 cut(s)	49, 355
Hpy188III	TCNNGA	3 cut(s)	193, 614, 773
Hpy8I	GTNNAC	8 cut(s)	112, 187, 341, 484, 565, 609, 758, 784
HpyAV	CCTTC	2 cut(s)	190, 391
HpyCH4III	ACNGT	6 cut(s)	220, 321, 367, 620, 755, 841
HpyCH4V	TGCA	4 cut(s)	263, 299, 332, 742
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 445
HpyF3I	CTNAG	4 cut(s)	11, 279, 345, 626
Hsp92II	CATG	4 cut(s)	43, 166, 592, 678
Kzo9I	GATC	2 cut(s)	49, 175
Lsp1109I	GCAGC	3 cut(s)	275, 460, 551
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	2 cut(s)	51, 177
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	2 cut(s)	49, 175
MlsI	TGGCCA	1 cut(s)	750
MluCI	AATT	3 cut(s)	307, 721, 736
MluNI	TGGCCA	1 cut(s)	750
MmeI	TCCRAC	4 cut(s)	110, 208, 250, 271
MnlI	CCTC	4 cut(s)	236, 352, 505, 838
Mox20I	TGGCCA	1 cut(s)	750
MscI	TGGCCA	1 cut(s)	750
MseI	TTAA	2 cut(s)	60, 473
MslI	CAYNNNNRTG	1 cut(s)	530
Msp20I	TGGCCA	1 cut(s)	750
MspA1I	CMGCKG	2 cut(s)	542, 821
MspI	CCGG	1 cut(s)	555
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	2 cut(s)	260, 445
NcoI	CCATGG	1 cut(s)	674
NdeII	GATC	2 cut(s)	49, 175
NlaIII	CATG	4 cut(s)	43, 166, 592, 678
NlaIV	GGNNCC	1 cut(s)	672
NmuCI	GTSAC	1 cut(s)	662
PfeI	GAWTC	3 cut(s)	464, 521, 702
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	3 cut(s)	265, 450, 541
PpuMI	RGGWCCY	1 cut(s)	683
Psp5II	RGGWCCY	1 cut(s)	683
PspFI	CCCAGC	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	672
PspPI	GGNCC	2 cut(s)	670, 683
PspPPI	RGGWCCY	1 cut(s)	683
PstNI	CAGNNNCTG	1 cut(s)	542
PvuII	CAGCTG	2 cut(s)	542, 821
RsaI	GTAC	4 cut(s)	68, 95, 420, 485
RsaNI	GTAC	4 cut(s)	67, 94, 419, 484
RseI	CAYNNNNRTG	1 cut(s)	530
SaqAI	TTAA	2 cut(s)	60, 473
SatI	GCNGC	3 cut(s)	264, 449, 540
Sau3AI	GATC	2 cut(s)	49, 175
Sau96I	GGNCC	2 cut(s)	670, 683
ScaI	AGTACT	1 cut(s)	420
SetI	ASST	9 cut(s)	68, 102, 247, 346, 497, 544, 685, 780, 823
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	3 cut(s)	108, 371, 568
SinI	GGWCC	2 cut(s)	670, 683
SmiMI	CAYNNNNRTG	1 cut(s)	530
Sse9I	AATT	3 cut(s)	307, 721, 736
SsiI	CCGC	2 cut(s)	453, 583
SspMI	CTAG	1 cut(s)	239
StyI	CCWWGG	3 cut(s)	238, 674, 690
TaaI	ACNGT	6 cut(s)	220, 321, 367, 620, 755, 841
TaqI	TCGA	2 cut(s)	725, 815
TasI	AATT	3 cut(s)	307, 721, 736
TatI	WGTACW	3 cut(s)	93, 418, 483
TfiI	GAWTC	3 cut(s)	464, 521, 702
Tru1I	TTAA	2 cut(s)	60, 473
Tru9I	TTAA	2 cut(s)	60, 473
TscAI	CASTG	3 cut(s)	150, 399, 758
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	3 cut(s)	263, 448, 539
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	4 cut(s)	28, 370, 577, 780
TspGWI	ACGGA	1 cut(s)	457
TspRI	CASTG	3 cut(s)	150, 399, 758
Van91I	CCANNNNNTGG	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	670, 683
XapI	RAATTY	3 cut(s)	307, 721, 736
XmaJI	CCTAGG	1 cut(s)	238
XmiI	GTMKAC	3 cut(s)	111, 564, 608
XspI	CTAG	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.