AT4G36860

Protein DA1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
17358343 .. 17362129
3787 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36860.2

Sequence Viewer

Length: 1662 bp
ATGGGGTGGCTAACTAAAATCCTTAAAGGTTCTAGCCATAAGTTTTCTGATGGACAATGTAATGGAAGATATAGAGAAGATAGAAACTTGGAAGGTCCTCGTTATTCTGCGGAAGGATCTGATTTTGACAAAGAGGAGATTGAATGTGCTATTGCACTTTCTCTTTCTGAACAAGAACATGTAATTCCACAAGATGACAAAGGAAAGAAAATAATCGAGTACAAATCTGAAACCGAAGAAGATGACGATGACGATGAGGATGAGGATGAAGAATACATGAGAGCTCAGCTAGAAGCAGCAGAGGAAGAGGAAAGACGGGTAGCTCAAGCTCAAATCGAGGAAGAAGAGAAAAGGAGAGCTGAAGCTCAACTAGAAGAAACAGAGAAACTGCTTGCAAAAGCTCGATTAGAAGAGGAAGAAATGAGGCGTTCTAAAGCCCAACTGGAGGAAGATGAGCTACTCGCCAAGGCCCTTCAAGAAAGTATGAATGTGGGATCTCCTCCTCGATATGATCCAGGAAATATACTTCAACCATATCCCTTCCTCATTCCTTCTAGTCACAGGATATGTGTCGGTTGCCAAGCTGAGATAGGACATGGAAGGTTTCTGAGTTGCATGGGTGGCGTTTGGCATCCTGAATGTTTCTGTTGCAATGCATGTGATAAGCCCATCATAGATTATGAGTTCTCAATGTCAGGAAATCGGCCTTATCACAAATTATGTTACAAGGAGCAGCATCATCCTAAATGTGATGTTTGCCATAACTTTATTCCGACAAATCCAGCTGGTCTTATTGAGTATAGGGCACATCCCTTTTGGATGCAAAAGTATTGTCCTTCACATGAGCGTGATGGAACTCCTCGGTGTTGCAGTTGTGAGCGAATGGAGCCAAAAGATACAAAATATCTCATTCTTGATGATGGTCGAAAACTGTGTCTTGAATGTCTCGACTCAGCCATTATGGACACTCATGAATGCCAACCATTGTACCTTGAGATACGTGAATTTTACGAAGGCTTACATATGAAAGTGGAACAGCAAATTCCTATGCTTTTGGTGGAGAGATCAGCTCTAAACGAAGCTATGGAAGGAGAGAAACACGGACATCATCATTTACCTGAAACTAGAGGACTTTGTTTGTCTGAAGAACAAACTGTCACCACGGTGTTAAGGAGACCAAGAATTGGGGCAGGCTACAAGTTAATAGACATGATCACAGAGCCTTGCAGGCTGATACGTCGTTGTGAAGTCACTGCGATTCTCATTTTATATGGACTTCCTCGTTTGTTAACCGGGTCAATCCTTGCTCATGAGATGATGCATGCATGGCTTCGACTAAATGGGTATCCAAATCTTAGACCAGAAGTGGAAGAAGGAATATGTCAAGTTTTAGCACACATGTGGTTGGAATCTGAGACTTATGCTGGCTCTACATTAGTAGACATCGCATCTTCTTCATCATCTGCTGTGGTGTCAGCATCGTCCAAGAAAGGTGAGAGGTCTGATTTTGAGAAGAAACTTGGTGAGTTTTTCAAGCATCAAATCGAGTCGGATTCTTCATCGGCATATGGGGATGGGTTCAGGCAAGGTAACCAAGCAGTTCTTAAGCATGGTCTGAGGCGAACCCTCGACCATATTCGCTTGACCGGTACATTTCCTTAA

Protein Analysis

553

Amino Acids

63.31

Weight (kDa)

5.21

Isoelectric Point (pI)

63.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIM PF00412 190 - 244 1.8e-08 LIM domain
DA1-like PF12315 339 - 449 1.5e-56 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1184
AccI GTMKAC 1 cut(s) 1440
AciI CCGC 1 cut(s) 110
AclWI GGATC 3 cut(s) 124, 502, 506
AcsI RAATTY 2 cut(s) 1004, 1041
AcuI CTGAAG 2 cut(s) 381, 1164
AfaI GTAC 3 cut(s) 221, 989, 1651
AfiI CCNNNNNNNGG 2 cut(s) 445, 1184
AflII CTTAAG 1 cut(s) 1604
AflIII ACRYGT 2 cut(s) 178, 1398
AgeI ACCGGT 1 cut(s) 1646
AgsI TTSAA 5 cut(s) 143, 476, 530, 941, 1534
AjnI CCWGG 1 cut(s) 514
AleI CACNNNNGTG 2 cut(s) 1163, 1399
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 3 cut(s) 950, 1168, 1409
AlwI GGATC 3 cut(s) 124, 502, 506
AoxI GGCC 2 cut(s) 468, 704
ApeKI GCWGC 2 cut(s) 296, 733
ApoI RAATTY 2 cut(s) 1004, 1041
ArsI GACNNNNNNTTYG 4 cut(s) 817, 849, 919, 951
AsiGI ACCGGT 1 cut(s) 1646
AspS9I GGNCC 2 cut(s) 95, 469
AsuC2I CCSGG 1 cut(s) 1294
AsuHPI GGTGA 3 cut(s) 1150, 1505, 1535
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 808
BaeI ACNNNNGTAYC 2 cut(s) 971, 1004
BanII GRGCYC 1 cut(s) 286
BarI GAAGNNNNNNTAC 2 cut(s) 441, 473
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 308, 745
BccI CCATC 5 cut(s) 44, 677, 845, 914, 1568
BciT130I CCWGG 1 cut(s) 516
BciVI GTATCC 1 cut(s) 1356
BclI TGATCA 1 cut(s) 1212
BcnI CCSGG 1 cut(s) 1294
BcoDI GTCTC 3 cut(s) 950, 1168, 1409
BfaI CTAG 5 cut(s) 33, 290, 371, 555, 1125
BfrI CTTAAG 1 cut(s) 1604
BfuI GTATCC 1 cut(s) 1356
BglI GCCNNNNNGGC 1 cut(s) 1228
BisI GCNGC 2 cut(s) 297, 734
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 2 cut(s) 298, 735
Bme1390I CCNGG 2 cut(s) 516, 1294
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 95, 469
BmiI GGNNCC 1 cut(s) 888
BmrFI CCNGG 2 cut(s) 516, 1294
BmsI GCATC 7 cut(s) 640, 745, 810, 1308, 1457, 1487, 1546
BplI GAGNNNNNCTC 2 cut(s) 1054, 1086
BpmI CTGGAG 1 cut(s) 464
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 309, 1013
BpuMI CCSGG 1 cut(s) 1294
BsaAI YACGTR 1 cut(s) 1001
BsaI GGTCTC 1 cut(s) 1168
BsaJI CCNNGG 3 cut(s) 465, 860, 1161
BsaWI WCCGGW 1 cut(s) 1646
Bsc4I CCNNNNNNNGG 2 cut(s) 445, 1184
Bse118I RCCGGY 1 cut(s) 1646
Bse1I ACTGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 658
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 3 cut(s) 465, 860, 1161
BseGI GGATG 7 cut(s) 265, 271, 631, 739, 808, 825, 1579
BseLI CCNNNNNNNGG 2 cut(s) 445, 1184
BseMI GCAATG 1 cut(s) 658
BseMII CTCAG 6 cut(s) 299, 576, 599, 966, 1404, 1607
BseNI ACTGG 1 cut(s) 447
BseRI GAGGAG 4 cut(s) 149, 489, 492, 849
BseSI GKGCMC 1 cut(s) 808
BseXI GCAGC 2 cut(s) 308, 745
BshFI GGCC 2 cut(s) 470, 706
BshTI ACCGGT 1 cut(s) 1646
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 2 cut(s) 1293, 1647
BslI CCNNNNNNNGG 2 cut(s) 445, 1184
BsmAI GTCTC 3 cut(s) 950, 1168, 1409
BsmI GAATGC 1 cut(s) 980
BsnI GGCC 2 cut(s) 470, 706
Bso31I GGTCTC 1 cut(s) 1168
Bsp1286I GDGCHC 2 cut(s) 286, 808
Bsp143I GATC 5 cut(s) 116, 494, 511, 1064, 1212
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 1 cut(s) 110
BspANI GGCC 2 cut(s) 470, 706
BspCNI CTCAG 6 cut(s) 298, 577, 600, 965, 1405, 1608
BspHI TCATGA 2 cut(s) 970, 1309
BspLI GGNNCC 1 cut(s) 888
BspPI GGATC 3 cut(s) 124, 502, 506
BspTI CTTAAG 1 cut(s) 1604
BspTNI GGTCTC 1 cut(s) 1168
BsrDI GCAATG 1 cut(s) 658
BsrFI RCCGGY 1 cut(s) 1646
BsrI ACTGG 1 cut(s) 447
BssAI RCCGGY 1 cut(s) 1646
BssECI CCNNGG 3 cut(s) 465, 860, 1161
BssMI GATC 5 cut(s) 116, 494, 511, 1064, 1212
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 3 cut(s) 933, 1156, 1165
Bst6I CTCTTC 3 cut(s) 300, 339, 405
BstAFI CTTAAG 1 cut(s) 1604
BstBAI YACGTR 1 cut(s) 1001
BstC8I GCNNGC 5 cut(s) 393, 1192, 1229, 1323, 1426
BstDEI CTNAG 7 cut(s) 285, 585, 608, 952, 1355, 1413, 1616
BstDSI CCRYGG 1 cut(s) 1161
BstEII GGTNACC 1 cut(s) 1589
BstF5I GGATG 7 cut(s) 265, 271, 631, 739, 808, 825, 1579
BstKTI GATC 5 cut(s) 119, 497, 514, 1067, 1215
BstMAI GTCTC 3 cut(s) 950, 1168, 1409
BstMBI GATC 5 cut(s) 116, 494, 511, 1064, 1212
BstMWI GCNNNNNNNGC 4 cut(s) 621, 886, 1228, 1327
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 4 cut(s) 182, 660, 1325, 1402
BstPI GGTNACC 1 cut(s) 1589
BstSCI CCNGG 2 cut(s) 514, 1292
BstSLI GKGCMC 1 cut(s) 808
BstV1I GCAGC 2 cut(s) 308, 745
BstX2I RGATCY 2 cut(s) 116, 494
BstYI RGATCY 2 cut(s) 116, 494
BsuI GTATCC 1 cut(s) 1356
BsuRI GGCC 2 cut(s) 470, 706
BtgI CCRYGG 1 cut(s) 1161
BtgZI GCGATG 1 cut(s) 1429
BtsCI GGATG 7 cut(s) 265, 271, 631, 739, 808, 825, 1579
BtsI GCAGTG 1 cut(s) 1251
BtsIMutI CAGTG 1 cut(s) 1251
Cac8I GCNNGC 5 cut(s) 393, 1192, 1229, 1323, 1426
CciI TCATGA 2 cut(s) 970, 1309
Cfr10I RCCGGY 1 cut(s) 1646
Cfr13I GGNCC 2 cut(s) 95, 469
Csp6I GTAC 3 cut(s) 220, 988, 1650
CspAI ACCGGT 1 cut(s) 1646
CviQI GTAC 3 cut(s) 220, 988, 1650
DdeI CTNAG 7 cut(s) 285, 585, 608, 952, 1355, 1413, 1616
DpnI GATC 5 cut(s) 118, 496, 513, 1066, 1214
DpnII GATC 5 cut(s) 116, 494, 511, 1064, 1212
Eam1104I CTCTTC 3 cut(s) 300, 339, 405
EarI CTCTTC 3 cut(s) 300, 339, 405
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 286
Eco31I GGTCTC 1 cut(s) 1168
Eco47I GGWCC 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 381, 1164
Eco91I GGTNACC 1 cut(s) 1589
EcoICRI GAGCTC 1 cut(s) 284
EcoO109I RGGNCCY 2 cut(s) 95, 469
EcoO65I GGTNACC 1 cut(s) 1589
EcoRII CCWGG 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 3 cut(s) 658, 1323, 1327
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 465
FalI AAGNNNNNCTT 2 cut(s) 1587, 1619
FauNDI CATATG 2 cut(s) 1023, 1567
FbaI TGATCA 1 cut(s) 1212
FblI GTMKAC 1 cut(s) 1440
Fnu4HI GCNGC 2 cut(s) 297, 734
FokI GGATG 7 cut(s) 272, 278, 618, 726, 795, 832, 1586
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 2 cut(s) 297, 734
FspBI CTAG 5 cut(s) 33, 290, 371, 555, 1125
GluI GCNGC 2 cut(s) 297, 734
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 2 cut(s) 470, 706
HapII CCGG 2 cut(s) 1293, 1647
HincII GTYRAC 1 cut(s) 1290
HindII GTYRAC 1 cut(s) 1290
HinfI GANTC 5 cut(s) 950, 1258, 1409, 1547, 1553
HpaI GTTAAC 1 cut(s) 1290
HpaII CCGG 2 cut(s) 1293, 1647
HphI GGTGA 3 cut(s) 1150, 1505, 1535
Hpy166II GTNNAC 2 cut(s) 1290, 1441
Hpy188III TCNNGA 8 cut(s) 476, 635, 696, 914, 938, 947, 971, 1310
Hpy8I GTNNAC 2 cut(s) 1290, 1441
Hpy99I CGWCG 1 cut(s) 1242
HpyCH4III ACNGT 3 cut(s) 933, 1156, 1165
HpyCH4IV ACGT 2 cut(s) 1000, 1237
HpyF10VI GCNNNNNNNGC 4 cut(s) 621, 886, 1228, 1327
HpyF3I CTNAG 7 cut(s) 285, 585, 608, 952, 1355, 1413, 1616
HpySE526I ACGT 2 cut(s) 1000, 1237
Ksp22I TGATCA 1 cut(s) 1212
KspAI GTTAAC 1 cut(s) 1290
Kzo9I GATC 5 cut(s) 116, 494, 511, 1064, 1212
LmnI GCTCC 2 cut(s) 730, 886
Lsp1109I GCAGC 2 cut(s) 308, 745
LweI GCATC 7 cut(s) 640, 745, 810, 1308, 1457, 1487, 1546
MaeI CTAG 5 cut(s) 33, 290, 371, 555, 1125
MaeII ACGT 2 cut(s) 1000, 1237
MaeIII GTNAC 5 cut(s) 557, 722, 1156, 1249, 1589
MalI GATC 5 cut(s) 118, 496, 513, 1066, 1214
MboI GATC 5 cut(s) 116, 494, 511, 1064, 1212
MflI RGATCY 2 cut(s) 116, 494
MhlI GDGCHC 2 cut(s) 286, 808
MluCI AATT 5 cut(s) 183, 716, 1004, 1041, 1182
MlyI GAGTC 2 cut(s) 944, 1556
MmeI TCCRAC 3 cut(s) 797, 1386, 1530
Mph1103I ATGCAT 3 cut(s) 658, 1323, 1327
MseI TTAA 6 cut(s) 24, 1169, 1202, 1289, 1605, 1660
MslI CAYNNNNRTG 3 cut(s) 846, 1163, 1399
MspA1I CMGCKG 1 cut(s) 785
MspCI CTTAAG 1 cut(s) 1604
MspI CCGG 2 cut(s) 1293, 1647
MspR9I CCNGG 2 cut(s) 516, 1294
Mva1269I GAATGC 1 cut(s) 980
MvaI CCWGG 1 cut(s) 516
MwoI GCNNNNNNNGC 4 cut(s) 621, 886, 1228, 1327
NciI CCSGG 1 cut(s) 1294
NdeI CATATG 2 cut(s) 1023, 1567
NdeII GATC 5 cut(s) 116, 494, 511, 1064, 1212
NlaIV GGNNCC 1 cut(s) 888
NmuCI GTSAC 3 cut(s) 557, 1156, 1249
NsiI ATGCAT 3 cut(s) 658, 1323, 1327
NspI RCATGY 4 cut(s) 182, 660, 1325, 1402
OliI CACNNNNGTG 2 cut(s) 1163, 1399
PaeI GCATGC 1 cut(s) 1325
PagI TCATGA 2 cut(s) 970, 1309
PciI ACATGT 2 cut(s) 178, 1398
PctI GAATGC 1 cut(s) 980
PfeI GAWTC 3 cut(s) 1258, 1409, 1553
PflMI CCANNNNNTGG 1 cut(s) 1184
PfoI TCCNGGA 1 cut(s) 514
PinAI ACCGGT 1 cut(s) 1646
PkrI GCNGC 2 cut(s) 298, 735
PleI GAGTC 2 cut(s) 944, 1555
PpsI GAGTC 2 cut(s) 944, 1555
Ppu21I YACGTR 1 cut(s) 1001
PpuMI RGGWCCY 1 cut(s) 95
PscI ACATGT 2 cut(s) 178, 1398
Psp124BI GAGCTC 1 cut(s) 286
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 514
PspEI GGTNACC 1 cut(s) 1589
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 1 cut(s) 888
PspPI GGNCC 2 cut(s) 95, 469
PspPPI RGGWCCY 1 cut(s) 95
PsuI RGATCY 2 cut(s) 116, 494
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 3 cut(s) 221, 989, 1651
RsaNI GTAC 3 cut(s) 220, 988, 1650
RseI CAYNNNNRTG 3 cut(s) 846, 1163, 1399
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 6 cut(s) 24, 1169, 1202, 1289, 1605, 1660
SatI GCNGC 2 cut(s) 297, 734
Sau3AI GATC 5 cut(s) 116, 494, 511, 1064, 1212
Sau96I GGNCC 2 cut(s) 95, 469
SchI GAGTC 2 cut(s) 944, 1556
ScrFI CCNGG 2 cut(s) 516, 1294
SduI GDGCHC 2 cut(s) 286, 808
SfaNI GCATC 7 cut(s) 640, 745, 810, 1308, 1457, 1487, 1546
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 3 cut(s) 846, 1163, 1399
SmlI CTYRAG 3 cut(s) 324, 992, 1604
SmoI CTYRAG 3 cut(s) 324, 992, 1604
SphI GCATGC 1 cut(s) 1325
Sse9I AATT 5 cut(s) 183, 716, 1004, 1041, 1182
SsiI CCGC 1 cut(s) 110
SspMI CTAG 5 cut(s) 33, 290, 371, 555, 1125
SstI GAGCTC 1 cut(s) 286
StyD4I CCNGG 2 cut(s) 514, 1292
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 3 cut(s) 933, 1156, 1165
TaiI ACGT 2 cut(s) 1003, 1240
TaqI TCGA 9 cut(s) 216, 336, 403, 505, 925, 948, 1333, 1545, 1629
TasI AATT 5 cut(s) 183, 716, 1004, 1041, 1182
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 3 cut(s) 1258, 1409, 1553
Tru1I TTAA 6 cut(s) 24, 1169, 1202, 1289, 1605, 1660
Tru9I TTAA 6 cut(s) 24, 1169, 1202, 1289, 1605, 1660
TscAI CASTG 1 cut(s) 1258
TseFI GTSAC 3 cut(s) 557, 1156, 1249
TseI GCWGC 2 cut(s) 296, 733
Tsp45I GTSAC 3 cut(s) 557, 1156, 1249
TspDTI ATGAA 6 cut(s) 282, 500, 987, 1040, 1446, 1548
TspGWI ACGGA 1 cut(s) 1116
TspRI CASTG 1 cut(s) 1258
Van91I CCANNNNNTGG 1 cut(s) 1184
Vha464I CTTAAG 1 cut(s) 1604
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 2 cut(s) 1004, 1041
XceI RCATGY 4 cut(s) 182, 660, 1325, 1402
XmiI GTMKAC 1 cut(s) 1440
XspI CTAG 5 cut(s) 33, 290, 371, 555, 1125
Zsp2I ATGCAT 3 cut(s) 658, 1323, 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.