Rw2G012440

DA1-related 1-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
12946350 .. 12949957
3608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G012440.1

Sequence Viewer

Length: 1590 bp
ATGGGTTGGCTGACGAAGATTCTTAAAGGTTCTAGTCATAAAGGGAACTATCATGCTAAATATGGACATGAAAGAACATGGGATGAGCCTCGAAATTCAGTGGAGGAAGACATAGATTGTGCTATTGCATTGTCCCTTTCGGAACTAGATCAGAAAGGAAAAAGAGTAATTGAGGATGAATCTCAATCAGAGGATGAAGAACAATCTGCTAAATTTGAATCCGATGATGATGAATCACCTGCCAAAGTTGAATCAGAGGATGATGAGCCACCTGCTAAAGTTGAATCAGACCATGACGAACCACCTGCCAAAATTTCATATGAGGAAGATGATCAAAGTGCTAAAATTCAATTGGAGGAAGATGAACAGCTTGCAATGGCTATTCAGGAAAGTTTGAACGTGGATTCTCCTCCTCGACATGACACTGGCAGTATTTTTCGACCATTTCCATTCTTCAATCCAGCTGGTAACAGGATATGTGCTGGCTGTAAACAGGGGATTGGCCATGGCCAATACTTGAGTTGTGTTGGTGCTGTTTGGCATCCAAATTGTTTTTGTTGCCATGCTTGCAATCTTCCAATTACTGATTATGAGTTTTCTATGTCTGGGAATCACCCTTACCACAAATCCTGCTACAAGGAGAAGCATCATCCAAGATGTGATGTTTGCAGGAGTTTTATCCCAACAAACTCAGCTGGTCTTATTGAGTATAGGGCACATCCTTTCTGGCTACAGAAGTACTGCCCCTCTCATGAGCATGATAGTACTCCTCGGTGTTGTAGCTGTGAAAGAATGGAGCCAAGGGACACAAAATATCTGTTACTTGATGATGGTCGAAAGCTATGTCTGGAGTGTCTAGACTCCGCAATTATGGATACTCACGAATGTCAACCCCTTTACCTTGAAATACAAGAATTTTACGAAGGTTTAAATATGAAAGTGGAACAGCAAGTTCCAATGCTCTTGGTGGAGAGACAAGCACTAAACGAGGCCATGGAGGGAGAAAAGAACGGTCATCATCACTTGCCTGAGACTAGAGGACTCTGCTTATCAGAAGAACAGACTGTTACCACTATTTTAAGGAGGCCGAAGATTGGAGCGGGCTACCGGATGATAGACATGATAACTGAGCCATATAGACTGGTTCGTCGCTGCGAAGTGACAGCAATTCTCGTATTGTATGGCCTTCCTAGGTTATTGACAGGGTCTATTCTTGCTCATGAGATGATGCATGCATGGCTGCGGCTCAAAGGTTATCCAAATTTGAGCCCAGAGGTTGAAGAAGGTATCTGCCAAGTGCTGGCACATATGTGGCTGGATGCAGAGACATATTCTGCGCCTGGTAGTGATGTTGGAACATCATCGTCGTCTTCCTCTTCTTCCTCAGTGTCCTCTTCTAGTTCGGGATCATCTAAGAAAGGTAAACGGTCCGACTTTGAGAAGAAACTTGGTGACTTTTTTAAACACCAAATCGAGTCAGATTCATCCACAGCTTATGGAGAAGGATTCAGACAAGGTAACCAAGCAGTGCTCAAGTATGGCCTAAGGAGGACCCTTGACCATATTCGAATCACAGGAAGCTTCCCCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

529

Amino Acids

59.7

Weight (kDa)

5.3

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIM PF00412 160 - 215 3e-09 LIM domain
DA1-like PF12315 309 - 524 2.6e-104 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 247, 280, 313
AasI GACNNNNNNGTC 1 cut(s) 1146
Acc36I ACCTGC 3 cut(s) 247, 280, 313
AccB7I CCANNNNNTGG 1 cut(s) 1300
AccBSI CCGCTC 1 cut(s) 1100
AciI CCGC 3 cut(s) 864, 1100, 1243
AclWI GGATC 1 cut(s) 1414
AcoI YGGCCR 2 cut(s) 502, 508
AcsI RAATTY 6 cut(s) 94, 212, 312, 345, 914, 1261
AfaI GTAC 2 cut(s) 740, 766
AfiI CCNNNNNNNGG 2 cut(s) 1094, 1300
AgsI TTSAA 8 cut(s) 218, 251, 284, 350, 397, 457, 905, 1280
AjnI CCWGG 1 cut(s) 1339
AleI CACNNNNGTG 1 cut(s) 1309
AluBI AGCT 7 cut(s) 370, 464, 695, 783, 841, 1493, 1581
AluI AGCT 7 cut(s) 370, 464, 695, 783, 841, 1493, 1581
Alw21I GWGCWC 1 cut(s) 1533
Alw26I GTCTC 3 cut(s) 967, 1025, 1319
AlwI GGATC 1 cut(s) 1414
AoxI GGCC 6 cut(s) 502, 508, 990, 1085, 1183, 1540
ApeKI GCWGC 2 cut(s) 1152, 1240
ApoI RAATTY 6 cut(s) 94, 212, 312, 345, 914, 1261
ArsI GACNNNNNNTTYG 2 cut(s) 829, 861
AspA2I CCTAGG 1 cut(s) 1190
AspLEI GCGC 1 cut(s) 1339
AspS9I GGNCC 2 cut(s) 1428, 1551
AsuHPI GGTGA 3 cut(s) 228, 605, 1463
AsuII TTCGAA 1 cut(s) 1567
AvaII GGWCC 2 cut(s) 1428, 1551
AvrII CCTAGG 1 cut(s) 1190
AxyI CCTNAGG 1 cut(s) 1544
BaeGI GKGCMC 1 cut(s) 718
BalI TGGCCA 2 cut(s) 504, 510
BanII GRGCYC 1 cut(s) 1271
BbsI GAAGAC 2 cut(s) 114, 1362
Bbv12I GWGCWC 1 cut(s) 1533
BbvI GCAGC 2 cut(s) 1139, 1227
BccI CCATC 1 cut(s) 824
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 1 cut(s) 1341
BciVI GTATCC 1 cut(s) 868
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 3 cut(s) 967, 1025, 1319
BfaI CTAG 6 cut(s) 33, 146, 857, 1035, 1191, 1398
BfmI CTRYAG 1 cut(s) 731
BfuAI ACCTGC 3 cut(s) 247, 280, 313
BfuI GTATCC 1 cut(s) 868
BisI GCNGC 3 cut(s) 1153, 1241, 1244
BlnI CCTAGG 1 cut(s) 1190
BlsI GCNGC 3 cut(s) 1154, 1242, 1245
BmcAI AGTACT 2 cut(s) 740, 766
Bme1390I CCNGG 1 cut(s) 1341
Bme18I GGWCC 2 cut(s) 1428, 1551
BmgT120I GGNCC 2 cut(s) 1428, 1551
BmiI GGNNCC 2 cut(s) 798, 1553
BmrFI CCNGG 1 cut(s) 1341
BmsI GCATC 4 cut(s) 550, 655, 1218, 1309
BpiI GAAGAC 2 cut(s) 114, 1362
BpmI CTGGAG 1 cut(s) 869
Bpu14I TTCGAA 1 cut(s) 1567
BpuEI CTTGAG 2 cut(s) 538, 1517
BsaJI CCNNGG 5 cut(s) 505, 770, 800, 993, 1190
BsaWI WCCGGW 1 cut(s) 1107
Bsc4I CCNNNNNNNGG 2 cut(s) 1094, 1300
Bse1I ACTGG 2 cut(s) 430, 1146
Bse21I CCTNAGG 1 cut(s) 1544
Bse3DI GCAATG 1 cut(s) 381
BseBI CCWGG 1 cut(s) 1341
BseDI CCNNGG 5 cut(s) 505, 770, 800, 993, 1190
BseLI CCNNNNNNNGG 2 cut(s) 1094, 1300
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 4 cut(s) 705, 1020, 1119, 1398
BseNI ACTGG 2 cut(s) 430, 1146
BseRI GAGGAG 3 cut(s) 399, 402, 759
BseSI GKGCMC 1 cut(s) 718
BseXI GCAGC 2 cut(s) 1139, 1227
BshFI GGCC 6 cut(s) 504, 510, 992, 1087, 1185, 1542
BsiHKAI GWGCWC 1 cut(s) 1533
BsiSI CCGG 1 cut(s) 1108
BslFI GGGAC 2 cut(s) 118, 818
BslI CCNNNNNNNGG 2 cut(s) 1094, 1300
BsmAI GTCTC 3 cut(s) 967, 1025, 1319
BsmFI GGGAC 2 cut(s) 118, 818
BsnI GGCC 6 cut(s) 504, 510, 992, 1087, 1185, 1542
Bsp119I TTCGAA 1 cut(s) 1567
Bsp1286I GDGCHC 3 cut(s) 718, 1271, 1533
Bsp143I GATC 3 cut(s) 148, 331, 1406
Bsp19I CCATGG 2 cut(s) 505, 993
BspACI CCGC 3 cut(s) 864, 1100, 1243
BspANI GGCC 6 cut(s) 504, 510, 992, 1087, 1185, 1542
BspCNI CTCAG 4 cut(s) 704, 1021, 1120, 1397
BspHI TCATGA 2 cut(s) 751, 1219
BspLI GGNNCC 2 cut(s) 798, 1553
BspMI ACCTGC 3 cut(s) 247, 280, 313
BspPI GGATC 1 cut(s) 1414
BspT104I TTCGAA 1 cut(s) 1567
BsrBI CCGCTC 1 cut(s) 1100
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 2 cut(s) 430, 1146
BssECI CCNNGG 5 cut(s) 505, 770, 800, 993, 1190
BssMI GATC 3 cut(s) 148, 331, 1406
BssT1I CCWWGG 4 cut(s) 505, 800, 993, 1190
Bst2UI CCWGG 1 cut(s) 1341
Bst4CI ACNGT 3 cut(s) 1013, 1066, 1428
Bst6I CTCTTC 2 cut(s) 1381, 1399
BstBI TTCGAA 1 cut(s) 1567
BstC8I GCNNGC 6 cut(s) 372, 484, 568, 1102, 1233, 1302
BstDEI CTNAG 6 cut(s) 691, 1029, 1128, 1384, 1413, 1544
BstDSI CCRYGG 2 cut(s) 505, 993
BstEII GGTNACC 1 cut(s) 1517
BstHHI GCGC 1 cut(s) 1339
BstKTI GATC 3 cut(s) 151, 334, 1409
BstMAI GTCTC 3 cut(s) 967, 1025, 1319
BstMBI GATC 3 cut(s) 148, 331, 1406
BstMWI GCNNNNNNNGC 2 cut(s) 567, 1237
BstNI CCWGG 1 cut(s) 1341
BstNSI RCATGY 1 cut(s) 1235
BstPI GGTNACC 1 cut(s) 1517
BstSCI CCNGG 1 cut(s) 1339
BstSFI CTRYAG 1 cut(s) 731
BstSLI GKGCMC 1 cut(s) 718
BstV1I GCAGC 2 cut(s) 1139, 1227
BstV2I GAAGAC 2 cut(s) 114, 1362
Bsu36I CCTNAGG 1 cut(s) 1544
BsuI GTATCC 1 cut(s) 868
BsuRI GGCC 6 cut(s) 504, 510, 992, 1087, 1185, 1542
BtgI CCRYGG 2 cut(s) 505, 993
BtsI GCAGTG 1 cut(s) 1533
BtsIMutI CAGTG 4 cut(s) 105, 423, 1392, 1533
BveI ACCTGC 3 cut(s) 247, 280, 313
Cac8I GCNNGC 6 cut(s) 372, 484, 568, 1102, 1233, 1302
CciI TCATGA 2 cut(s) 751, 1219
CfoI GCGC 1 cut(s) 1339
Cfr13I GGNCC 2 cut(s) 1428, 1551
CpoI CGGWCCG 1 cut(s) 1428
Csp6I GTAC 2 cut(s) 739, 765
CspI CGGWCCG 1 cut(s) 1428
CviQI GTAC 2 cut(s) 739, 765
DdeI CTNAG 6 cut(s) 691, 1029, 1128, 1384, 1413, 1544
DpnI GATC 3 cut(s) 150, 333, 1408
DpnII GATC 3 cut(s) 148, 331, 1406
DraI TTTAAA 2 cut(s) 930, 1462
DrdI GACNNNNNNGTC 1 cut(s) 1146
DseDI GACNNNNNNGTC 1 cut(s) 1146
EaeI YGGCCR 2 cut(s) 502, 508
Eam1104I CTCTTC 2 cut(s) 1381, 1399
EarI CTCTTC 2 cut(s) 1381, 1399
Eco130I CCWWGG 4 cut(s) 505, 800, 993, 1190
Eco24I GRGCYC 1 cut(s) 1271
Eco47I GGWCC 2 cut(s) 1428, 1551
Eco81I CCTNAGG 1 cut(s) 1544
Eco91I GGTNACC 1 cut(s) 1517
EcoO109I RGGNCCY 1 cut(s) 1551
EcoO65I GGTNACC 1 cut(s) 1517
EcoRII CCWGG 1 cut(s) 1339
EcoT14I CCWWGG 4 cut(s) 505, 800, 993, 1190
EcoT22I ATGCAT 2 cut(s) 1233, 1237
EcoT38I GRGCYC 1 cut(s) 1271
ErhI CCWWGG 4 cut(s) 505, 800, 993, 1190
FaqI GGGAC 2 cut(s) 118, 818
FauI CCCGC 1 cut(s) 1093
FauNDI CATATG 2 cut(s) 319, 1308
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 3 cut(s) 1153, 1241, 1244
FriOI GRGCYC 1 cut(s) 1271
Fsp4HI GCNGC 3 cut(s) 1153, 1241, 1244
FspBI CTAG 6 cut(s) 33, 146, 857, 1035, 1191, 1398
GlaI GCGC 1 cut(s) 1338
GluI GCNGC 3 cut(s) 1153, 1241, 1244
GsuI CTGGAG 1 cut(s) 869
HaeIII GGCC 6 cut(s) 504, 510, 992, 1087, 1185, 1542
HapII CCGG 1 cut(s) 1108
HhaI GCGC 1 cut(s) 1339
Hin6I GCGC 1 cut(s) 1337
HinP1I GCGC 1 cut(s) 1337
HincII GTYRAC 1 cut(s) 890
HindII GTYRAC 1 cut(s) 890
HindIII AAGCTT 1 cut(s) 1579
HpaII CCGG 1 cut(s) 1108
HphI GGTGA 3 cut(s) 228, 605, 1463
Hpy166II GTNNAC 3 cut(s) 491, 890, 1424
Hpy188III TCNNGA 7 cut(s) 386, 752, 848, 857, 881, 1220, 1404
Hpy8I GTNNAC 3 cut(s) 491, 890, 1424
Hpy99I CGWCG 2 cut(s) 1152, 1369
HpyAV CCTTC 4 cut(s) 917, 1196, 1277, 1496
HpyCH4III ACNGT 3 cut(s) 1013, 1066, 1428
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 7 cut(s) 128, 374, 570, 669, 1231, 1235, 1322
HpyF10VI GCNNNNNNNGC 2 cut(s) 567, 1237
HpyF3I CTNAG 6 cut(s) 691, 1029, 1128, 1384, 1413, 1544
HpySE526I ACGT 1 cut(s) 399
HspAI GCGC 1 cut(s) 1337
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 3 cut(s) 148, 331, 1406
LmnI GCTCC 2 cut(s) 796, 1097
Lsp1109I GCAGC 2 cut(s) 1139, 1227
LweI GCATC 4 cut(s) 550, 655, 1218, 1309
MaeI CTAG 6 cut(s) 33, 146, 857, 1035, 1191, 1398
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 6 cut(s) 467, 819, 1066, 1159, 1451, 1517
MalI GATC 3 cut(s) 150, 333, 1408
MbiI CCGCTC 1 cut(s) 1100
MboI GATC 3 cut(s) 148, 331, 1406
MfeI CAATTG 1 cut(s) 350
MhlI GDGCHC 3 cut(s) 718, 1271, 1533
MlsI TGGCCA 2 cut(s) 504, 510
MluNI TGGCCA 2 cut(s) 504, 510
MlyI GAGTC 3 cut(s) 854, 1035, 1484
MmeI TCCRAC 2 cut(s) 1333, 1455
Mox20I TGGCCA 2 cut(s) 504, 510
Mph1103I ATGCAT 2 cut(s) 1233, 1237
MscI TGGCCA 2 cut(s) 504, 510
MseI TTAA 4 cut(s) 24, 929, 1079, 1461
MslI CAYNNNNRTG 2 cut(s) 756, 1309
Msp20I TGGCCA 2 cut(s) 504, 510
MspA1I CMGCKG 2 cut(s) 464, 695
MspI CCGG 1 cut(s) 1108
MspR9I CCNGG 1 cut(s) 1341
MunI CAATTG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 1341
MwoI GCNNNNNNNGC 2 cut(s) 567, 1237
NcoI CCATGG 2 cut(s) 505, 993
NdeI CATATG 2 cut(s) 319, 1308
NdeII GATC 3 cut(s) 148, 331, 1406
NlaIV GGNNCC 2 cut(s) 798, 1553
NmuCI GTSAC 2 cut(s) 1159, 1451
NsiI ATGCAT 2 cut(s) 1233, 1237
NspI RCATGY 1 cut(s) 1235
NspV TTCGAA 1 cut(s) 1567
OliI CACNNNNGTG 1 cut(s) 1309
PaeI GCATGC 1 cut(s) 1235
PagI TCATGA 2 cut(s) 751, 1219
PaqCI CACCTGC 3 cut(s) 247, 280, 313
PflFI GACNNNGTC 1 cut(s) 1204
PflMI CCANNNNNTGG 1 cut(s) 1300
PkrI GCNGC 3 cut(s) 1154, 1242, 1245
PleI GAGTC 3 cut(s) 854, 1035, 1483
PpsI GAGTC 3 cut(s) 854, 1035, 1483
PpuMI RGGWCCY 1 cut(s) 1551
Psp5II RGGWCCY 1 cut(s) 1551
Psp6I CCWGG 1 cut(s) 1339
PspEI GGTNACC 1 cut(s) 1517
PspGI CCWGG 1 cut(s) 1339
PspN4I GGNNCC 2 cut(s) 798, 1553
PspPI GGNCC 2 cut(s) 1428, 1551
PspPPI RGGWCCY 1 cut(s) 1551
PsyI GACNNNGTC 1 cut(s) 1204
PvuII CAGCTG 2 cut(s) 464, 695
RsaI GTAC 2 cut(s) 740, 766
RsaNI GTAC 2 cut(s) 739, 765
RseI CAYNNNNRTG 2 cut(s) 756, 1309
Rsr2I CGGWCCG 1 cut(s) 1428
RsrII CGGWCCG 1 cut(s) 1428
SaqAI TTAA 4 cut(s) 24, 929, 1079, 1461
SatI GCNGC 3 cut(s) 1153, 1241, 1244
Sau3AI GATC 3 cut(s) 148, 331, 1406
Sau96I GGNCC 2 cut(s) 1428, 1551
ScaI AGTACT 2 cut(s) 740, 766
SchI GAGTC 3 cut(s) 854, 1035, 1484
ScrFI CCNGG 1 cut(s) 1341
SduI GDGCHC 3 cut(s) 718, 1271, 1533
SfaNI GCATC 4 cut(s) 550, 655, 1218, 1309
SfcI CTRYAG 1 cut(s) 731
SfuI TTCGAA 1 cut(s) 1567
SinI GGWCC 2 cut(s) 1428, 1551
SmiMI CAYNNNNRTG 2 cut(s) 756, 1309
SmlI CTYRAG 2 cut(s) 517, 1532
SmoI CTYRAG 2 cut(s) 517, 1532
SphI GCATGC 1 cut(s) 1235
SsiI CCGC 3 cut(s) 864, 1100, 1243
SspMI CTAG 6 cut(s) 33, 146, 857, 1035, 1191, 1398
StyD4I CCNGG 1 cut(s) 1339
StyI CCWWGG 4 cut(s) 505, 800, 993, 1190
TaaI ACNGT 3 cut(s) 1013, 1066, 1428
TaiI ACGT 1 cut(s) 402
TaqI TCGA 6 cut(s) 91, 415, 439, 835, 1473, 1567
TatI WGTACW 2 cut(s) 738, 764
TauI GCSGC 1 cut(s) 1246
Tru1I TTAA 4 cut(s) 24, 929, 1079, 1461
Tru9I TTAA 4 cut(s) 24, 929, 1079, 1461
TscAI CASTG 4 cut(s) 105, 430, 1392, 1533
TseFI GTSAC 2 cut(s) 1159, 1451
TseI GCWGC 2 cut(s) 1152, 1240
Tsp45I GTSAC 2 cut(s) 1159, 1451
TspDTI ATGAA 8 cut(s) 84, 192, 210, 246, 306, 378, 950, 1473
TspRI CASTG 4 cut(s) 105, 430, 1392, 1533
Tth111I GACNNNGTC 1 cut(s) 1204
Van91I CCANNNNNTGG 1 cut(s) 1300
VpaK11BI GGWCC 2 cut(s) 1428, 1551
XapI RAATTY 6 cut(s) 94, 212, 312, 345, 914, 1261
XbaI TCTAGA 1 cut(s) 856
XceI RCATGY 1 cut(s) 1235
XmaJI CCTAGG 1 cut(s) 1190
XspI CTAG 6 cut(s) 33, 146, 857, 1035, 1191, 1398
ZrmI AGTACT 2 cut(s) 740, 766
Zsp2I ATGCAT 2 cut(s) 1233, 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.