Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004156

Physical Location & Seq

Genomic Coordinates Reverse (-)

7945986 .. 7952121

Gene Structure 6136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14310.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGGTTGGCTGAGTAAGATCCTAAAAGGTTCCAGTCATAAAGGGCACTATCATGGTAAATATGGACATGAAAGAACATGGGATGAGCCTCGAAATTCAGTGGAAGAAGACATAGATTGTGCTATAGCATTGTCCCTTTCGGAACTAGATCAGAAAGGAAAAAGTGTAGCCGAGGAATCTCAATCAGAGGATGAAGAACAGCCTGCTAAAGTGGAATCAGATGATGATGAATCACCTGCCAAAGTTGAATCAGAGGATGATGAATCACCTGCCAAAGTTGAATCAGAGGATAATGAGCCAGCTGCTAAAGTTGAATCAGACCATGATGAACCAGCTGCCAAAATTTCATATGAGGAAGATGATCAAAGTGCTAAAGTTCAACTGGAGGAAGATGAACAACTTGCAATGGCTATTCAGGAAAGTTTGAATGTGGATTCTCCTCCTCGACATGACACTGGCAGTAATTTTCAACCATATCTCAATCCAGCTGGGAACAGCAGGATATGTGCTGGCTGTAAACATGGGATTGGCCATGGGCGATACTTGAGTTGTGTTGGTGCTGTTTGGCATCCAGATTGTTTTTGTTGCCATGCTTGCAATCTTCCAATTACTGATTATGAGTTTTCTATGTCTGAGAATCATCCTTACCACAAATCCTGCTACAAGGAAAAGCATCATCCAAGATGTGATGTTTGCAAGAGTTTTATCCCAACAAACTCAGATGGTCGTATTGAGTATAGGGCACATCCTTTCTGGTTACAAAAGTACTGCCCCTCTCATGAGCGTGATAGGACTCCACGGTGTTGTAGCTGTGAAAGAATGGAGCCAAAGGACACAAAATATTTGTTACTTGATGATGGCCGAAAGCTATGTCTGGAGTGTCTAGACTCGGCAATTATGGATACTCACGAATGCCAACCCCTTTACCTTGAAATACAAGAATTTTACGAAGGTTTATATATGAAAGTGGAACAGCAAGTTCCAATGCTCTTGGTAGAGAGACAAGCACTAAACGAGGCCATGGATGGAGAAAAGAATGGTCATCATCACTTGCCTGAGACTAGAGGACTCTGCTTATCAGAAGAACAGACTGTTACCAATATTTCAAGGAGGCCGAAGATTGGAGCAGGCTATCGGATGATAGACATGATAACCGAGACTTATAGATTGGTTCGTCACTGTGAAGTGACAGCAATTCTTGTATTGTATGGTCTTCCTAGGGTCTATTCTTGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

413

Amino Acids

46.92

Weight (kDa)

5.01

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	169 - 224	2e-09	LIM domain
DA1-like	PF12315	318 - 533	9.5e-103	Protein DA1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36860 AT4G36860 AT4G36860
fragaria_vesca	FvH4_1g14251 FvH4_1g14310 FvH4_1g14310 FvH4_1g14310 FvH4_1g14310 FvH4_1g14310
malus_domestica	MD02G1156700.v1.1 MD10G1020400.v1.1 MD15G1271000.v1.1
prunus_persica	Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1
pyrus_communis	pycom02g12360 pycom10g01270 pycom15g23490
rosa_chinensis	RchiOBHm_Chr2g0102971
rosa_multiflora	Rmu_sc0000388.1_g000036
rosa_roxburghii	Rroxscaffold_2G00140050
rosa_rugosa	Rorug02G0110800 Rorug02G0110900 Rorug02G0111000 Rorug02G0111000
rosa_samantha	Rh2AG159200 Rh2BG165700 Rh2CG165700 Rh2DG164500
rosa_wichuraiana	Rw2G012440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	244, 277
Acc36I	ACCTGC	2 cut(s)	244, 277
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	2 cut(s)	529, 859
AcsI	RAATTY	3 cut(s)	94, 342, 941
AfaI	GTAC	1 cut(s)	767
AfiI	CCNNNNNNNGG	1 cut(s)	1121
AgsI	TTSAA	8 cut(s)	248, 281, 314, 380, 427, 470, 932, 1107
AluBI	AGCT	5 cut(s)	302, 335, 488, 810, 868
AluI	AGCT	5 cut(s)	302, 335, 488, 810, 868
Alw26I	GTCTC	3 cut(s)	994, 1052, 1151
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	4 cut(s)	529, 859, 1017, 1112
ApeKI	GCWGC	2 cut(s)	302, 335
ApoI	RAATTY	3 cut(s)	94, 342, 941
ArsI	GACNNNNNNTTYG	2 cut(s)	856, 888
AspA2I	CCTAGG	1 cut(s)	1217
AsuHPI	GGTGA	2 cut(s)	225, 258
AvrII	CCTAGG	1 cut(s)	1217
BaeGI	GKGCMC	2 cut(s)	48, 745
BaeI	ACNNNNGTAYC	2 cut(s)	532, 565
BalI	TGGCCA	1 cut(s)	531
BbsI	GAAGAC	2 cut(s)	114, 1205
BbvI	GCAGC	2 cut(s)	289, 322
BccI	CCATC	3 cut(s)	716, 851, 1019
BciVI	GTATCC	1 cut(s)	895
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	3 cut(s)	994, 1052, 1151
BfaI	CTAG	4 cut(s)	146, 884, 1062, 1218
BfmI	CTRYAG	1 cut(s)	123
BfuAI	ACCTGC	2 cut(s)	244, 277
BfuI	GTATCC	1 cut(s)	895
BisI	GCNGC	2 cut(s)	303, 336
BlnI	CCTAGG	1 cut(s)	1217
BlsI	GCNGC	2 cut(s)	304, 337
BmcAI	AGTACT	1 cut(s)	767
BmiI	GGNNCC	2 cut(s)	31, 825
BmsI	GCATC	2 cut(s)	577, 682
BpiI	GAAGAC	2 cut(s)	114, 1205
BpmI	CTGGAG	2 cut(s)	404, 896
BpuEI	CTTGAG	1 cut(s)	565
BsaJI	CCNNGG	5 cut(s)	171, 532, 797, 1020, 1217
Bsc4I	CCNNNNNNNGG	1 cut(s)	1121
Bse1I	ACTGG	3 cut(s)	33, 387, 460
Bse3DI	GCAATG	1 cut(s)	411
BseDI	CCNNGG	5 cut(s)	171, 532, 797, 1020, 1217
BseGI	GGATG	9 cut(s)	88, 196, 262, 568, 640, 676, 745, 1030, 1143
BseLI	CCNNNNNNNGG	1 cut(s)	1121
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	624, 732, 1047
BseNI	ACTGG	3 cut(s)	33, 387, 460
BseRI	GAGGAG	2 cut(s)	429, 432
BseSI	GKGCMC	2 cut(s)	48, 745
BseXI	GCAGC	2 cut(s)	289, 322
BseYI	CCCAGC	1 cut(s)	488
BshFI	GGCC	4 cut(s)	531, 861, 1019, 1114
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	1121
BsmAI	GTCTC	3 cut(s)	994, 1052, 1151
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	917
BsnI	GGCC	4 cut(s)	531, 861, 1019, 1114
Bsp1286I	GDGCHC	2 cut(s)	48, 745
Bsp143I	GATC	3 cut(s)	18, 148, 361
Bsp19I	CCATGG	2 cut(s)	532, 1020
BspANI	GGCC	4 cut(s)	531, 861, 1019, 1114
BspCNI	CTCAG	3 cut(s)	625, 731, 1048
BspHI	TCATGA	2 cut(s)	778, 1235
BspLI	GGNNCC	2 cut(s)	31, 825
BspMI	ACCTGC	2 cut(s)	244, 277
BspPI	GGATC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	3 cut(s)	33, 387, 460
BssECI	CCNNGG	5 cut(s)	171, 532, 797, 1020, 1217
BssMI	GATC	3 cut(s)	18, 148, 361
BssT1I	CCWWGG	3 cut(s)	532, 1020, 1217
Bst4CI	ACNGT	3 cut(s)	801, 1093, 1181
BstC8I	GCNNGC	5 cut(s)	204, 300, 511, 595, 1129
BstDEI	CTNAG	4 cut(s)	11, 633, 718, 1056
BstDSI	CCRYGG	3 cut(s)	532, 797, 1020
BstF5I	GGATG	9 cut(s)	88, 196, 262, 568, 640, 676, 745, 1030, 1143
BstKTI	GATC	3 cut(s)	21, 151, 364
BstMAI	GTCTC	3 cut(s)	994, 1052, 1151
BstMBI	GATC	3 cut(s)	18, 148, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	594
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	2 cut(s)	48, 745
BstV1I	GCAGC	2 cut(s)	289, 322
BstV2I	GAAGAC	2 cut(s)	114, 1205
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	895
BsuRI	GGCC	4 cut(s)	531, 861, 1019, 1114
BtgI	CCRYGG	3 cut(s)	532, 797, 1020
BtsCI	GGATG	9 cut(s)	88, 196, 262, 568, 640, 676, 745, 1030, 1143
BtsIMutI	CAGTG	3 cut(s)	105, 453, 1177
BveI	ACCTGC	2 cut(s)	244, 277
Cac8I	GCNNGC	5 cut(s)	204, 300, 511, 595, 1129
CciI	TCATGA	2 cut(s)	778, 1235
Csp6I	GTAC	1 cut(s)	766
CviQI	GTAC	1 cut(s)	766
DdeI	CTNAG	4 cut(s)	11, 633, 718, 1056
DpnI	GATC	3 cut(s)	20, 150, 363
DpnII	GATC	3 cut(s)	18, 148, 361
EaeI	YGGCCR	2 cut(s)	529, 859
Eco130I	CCWWGG	3 cut(s)	532, 1020, 1217
EcoT14I	CCWWGG	3 cut(s)	532, 1020, 1217
ErhI	CCWWGG	3 cut(s)	532, 1020, 1217
FaqI	GGGAC	1 cut(s)	118
FauNDI	CATATG	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	303, 336
FokI	GGATG	9 cut(s)	95, 203, 269, 555, 627, 663, 732, 1037, 1150
Fsp4HI	GCNGC	2 cut(s)	303, 336
FspBI	CTAG	4 cut(s)	146, 884, 1062, 1218
GluI	GCNGC	2 cut(s)	303, 336
GsaI	CCCAGC	1 cut(s)	492
GsuI	CTGGAG	2 cut(s)	404, 896
HaeIII	GGCC	4 cut(s)	531, 861, 1019, 1114
HphI	GGTGA	2 cut(s)	225, 258
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188III	TCNNGA	7 cut(s)	416, 572, 779, 875, 884, 908, 1236
Hpy8I	GTNNAC	1 cut(s)	518
HpyAV	CCTTC	1 cut(s)	944
HpyCH4III	ACNGT	3 cut(s)	801, 1093, 1181
HpyCH4V	TGCA	3 cut(s)	404, 597, 696
HpyF10VI	GCNNNNNNNGC	1 cut(s)	594
HpyF3I	CTNAG	4 cut(s)	11, 633, 718, 1056
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	18, 148, 361
LmnI	GCTCC	2 cut(s)	823, 1124
Lsp1109I	GCAGC	2 cut(s)	289, 322
LweI	GCATC	2 cut(s)	577, 682
MaeI	CTAG	4 cut(s)	146, 884, 1062, 1218
MaeIII	GTNAC	5 cut(s)	756, 846, 1093, 1175, 1186
MalI	GATC	3 cut(s)	20, 150, 363
MboI	GATC	3 cut(s)	18, 148, 361
MboII	GAAGA	9 cut(s)	116, 119, 206, 368, 401, 593, 1094, 1129, 1205
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	2 cut(s)	48, 745
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	7 cut(s)	94, 342, 463, 606, 894, 941, 1194
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	3 cut(s)	787, 881, 1062
Mox20I	TGGCCA	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	531
MslI	CAYNNNNRTG	2 cut(s)	51, 783
Msp20I	TGGCCA	1 cut(s)	531
MspA1I	CMGCKG	3 cut(s)	302, 335, 488
Mva1269I	GAATGC	1 cut(s)	917
MwoI	GCNNNNNNNGC	1 cut(s)	594
NcoI	CCATGG	2 cut(s)	532, 1020
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	3 cut(s)	18, 148, 361
NlaIV	GGNNCC	2 cut(s)	31, 825
NmeAIII	GCCGAG	2 cut(s)	196, 869
NmuCI	GTSAC	2 cut(s)	1175, 1186
PagI	TCATGA	2 cut(s)	778, 1235
PaqCI	CACCTGC	2 cut(s)	244, 277
PctI	GAATGC	1 cut(s)	917
PfeI	GAWTC	9 cut(s)	176, 215, 230, 248, 263, 281, 314, 434, 637
PkrI	GCNGC	2 cut(s)	304, 337
PleI	GAGTC	3 cut(s)	787, 881, 1062
PpsI	GAGTC	3 cut(s)	787, 881, 1062
PspFI	CCCAGC	1 cut(s)	488
PspN4I	GGNNCC	2 cut(s)	31, 825
PsuI	RGATCY	1 cut(s)	18
PvuII	CAGCTG	3 cut(s)	302, 335, 488
RsaI	GTAC	1 cut(s)	767
RsaNI	GTAC	1 cut(s)	766
RseI	CAYNNNNRTG	2 cut(s)	51, 783
SatI	GCNGC	2 cut(s)	303, 336
Sau3AI	GATC	3 cut(s)	18, 148, 361
ScaI	AGTACT	1 cut(s)	767
SchI	GAGTC	3 cut(s)	787, 881, 1062
SduI	GDGCHC	2 cut(s)	48, 745
SfaNI	GCATC	2 cut(s)	577, 682
SfcI	CTRYAG	1 cut(s)	123
SmiMI	CAYNNNNRTG	2 cut(s)	51, 783
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
Sse9I	AATT	7 cut(s)	94, 342, 463, 606, 894, 941, 1194
SspI	AATATT	2 cut(s)	842, 1102
SspMI	CTAG	4 cut(s)	146, 884, 1062, 1218
StyI	CCWWGG	3 cut(s)	532, 1020, 1217
TaaI	ACNGT	3 cut(s)	801, 1093, 1181
TaqI	TCGA	2 cut(s)	91, 445
TasI	AATT	7 cut(s)	94, 342, 463, 606, 894, 941, 1194
TatI	WGTACW	1 cut(s)	765
TfiI	GAWTC	9 cut(s)	176, 215, 230, 248, 263, 281, 314, 434, 637
TscAI	CASTG	3 cut(s)	105, 460, 1184
TseFI	GTSAC	2 cut(s)	1175, 1186
TseI	GCWGC	2 cut(s)	302, 335
Tsp45I	GTSAC	2 cut(s)	1175, 1186
TspDTI	ATGAA	8 cut(s)	84, 207, 243, 276, 336, 342, 408, 977
TspRI	CASTG	3 cut(s)	105, 460, 1184
XapI	RAATTY	3 cut(s)	94, 342, 941
XbaI	TCTAGA	1 cut(s)	883
XmaJI	CCTAGG	1 cut(s)	1217
XspI	CTAG	4 cut(s)	146, 884, 1062, 1218
ZrmI	AGTACT	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.