Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004156

Physical Location & Seq

Genomic Coordinates Forward (+)

7888778 .. 7889518

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14251.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGATGCATGCATGGCTACGCCTCAAAGTTGTTTGTTATCCAAATTTGAGCCCAGAGGTTGAAGAAGGTCTCTGCCAAGTGCTGGCACATGTGTGGCTTGACGCAGAGACGTATTCTGCTCCTGGTAGTGATGTTGGAACATCATCTGCGTCCTCCTCTTCCTCCTCAGCGTCCTCTTCTACTTCAGGATCATCTAAGAAAGAATTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

71

Amino Acids

7.37

Weight (kDa)

5.05

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DA1-like	PF12315	1 - 65	4e-20	Protein DA1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36860 AT4G36860 AT4G36860
fragaria_vesca	FvH4_1g14251 FvH4_1g14310 FvH4_1g14310 FvH4_1g14310 FvH4_1g14310 FvH4_1g14310
malus_domestica	MD02G1156700.v1.1 MD10G1020400.v1.1 MD15G1271000.v1.1
prunus_persica	Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1
pyrus_communis	pycom02g12360 pycom10g01270 pycom15g23490
rosa_chinensis	RchiOBHm_Chr2g0102971
rosa_multiflora	Rmu_sc0000388.1_g000036
rosa_roxburghii	Rroxscaffold_2G00140050
rosa_rugosa	Rorug02G0110800 Rorug02G0110900 Rorug02G0111000 Rorug02G0111000
rosa_samantha	Rh2AG159200 Rh2BG165700 Rh2CG165700 Rh2DG164500
rosa_wichuraiana	Rw2G012440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	82
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	2 cut(s)	43, 203
AcuI	CTGAAG	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	121
AleI	CACNNNNGTG	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	74, 101
AlwI	GGATC	1 cut(s)	196
ApoI	RAATTY	2 cut(s)	43, 203
BanII	GRGCYC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	74, 101
Bme1390I	CCNGG	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	180
BseRI	GAGGAG	2 cut(s)	145, 154
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	2 cut(s)	74, 101
BsmBI	CGTCTC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	179
BspPI	GGATC	1 cut(s)	196
BspTNI	GGTCTC	1 cut(s)	74
BssMI	GATC	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	123
Bst6I	CTCTTC	2 cut(s)	163, 181
BstC8I	GCNNGC	2 cut(s)	9, 84
BstDEI	CTNAG	2 cut(s)	166, 195
BstKTI	GATC	1 cut(s)	191
BstMAI	GTCTC	2 cut(s)	74, 101
BstMBI	GATC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	2 cut(s)	11, 92
BstSCI	CCNGG	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	9, 84
CseI	GACGC	3 cut(s)	110, 138, 159
CviAII	CATG	3 cut(s)	8, 12, 89
CviJI	RGCY	3 cut(s)	16, 51, 97
CviKI_1	RGCY	3 cut(s)	16, 51, 97
DdeI	CTNAG	2 cut(s)	166, 195
DpnI	GATC	1 cut(s)	190
DpnII	GATC	1 cut(s)	188
Eam1104I	CTCTTC	2 cut(s)	163, 181
EarI	CTCTTC	2 cut(s)	163, 181
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	121
EcoT22I	ATGCAT	2 cut(s)	9, 13
EcoT38I	GRGCYC	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	3 cut(s)	11, 15, 92
FaiI	YATR	3 cut(s)	9, 13, 90
FatI	CATG	3 cut(s)	7, 11, 88
FriOI	GRGCYC	1 cut(s)	53
HgaI	GACGC	3 cut(s)	110, 138, 159
Hin1II	CATG	3 cut(s)	11, 15, 92
Hpy188III	TCNNGA	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	2 cut(s)	7, 11
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	2 cut(s)	166, 195
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	11, 15, 92
Kzo9I	GATC	1 cut(s)	188
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	5 cut(s)	66, 68, 108, 135, 171
MaeII	ACGT	1 cut(s)	110
MalI	GATC	1 cut(s)	190
MboI	GATC	1 cut(s)	188
MboII	GAAGA	3 cut(s)	74, 150, 168
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	2 cut(s)	43, 203
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	7 cut(s)	32, 49, 163, 166, 172, 175, 184
Mph1103I	ATGCAT	2 cut(s)	9, 13
MseI	TTAA	1 cut(s)	211
MslI	CAYNNNNRTG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	13
NdeII	GATC	1 cut(s)	188
NlaIII	CATG	3 cut(s)	11, 15, 92
NsiI	ATGCAT	2 cut(s)	9, 13
NspI	RCATGY	2 cut(s)	11, 92
OliI	CACNNNNGTG	1 cut(s)	91
PaeI	GCATGC	1 cut(s)	11
PciI	ACATGT	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	82
PscI	ACATGT	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	211
Sau3AI	GATC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	3 cut(s)	60, 70, 113
SmiMI	CAYNNNNRTG	1 cut(s)	91
SphI	GCATGC	1 cut(s)	11
Sse9I	AATT	2 cut(s)	43, 203
StyD4I	CCNGG	1 cut(s)	121
TaiI	ACGT	1 cut(s)	113
TasI	AATT	2 cut(s)	43, 203
Tru1I	TTAA	1 cut(s)	211
Tru9I	TTAA	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	82
XapI	RAATTY	2 cut(s)	43, 203
XceI	RCATGY	2 cut(s)	11, 92
Zsp2I	ATGCAT	2 cut(s)	9, 13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.