Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004156

Physical Location & Seq

Genomic Coordinates Reverse (-)

2525468 .. 2526576

Gene Structure 1109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1020400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAACGGTCTTCCAGAAAGTTTGAACTTGGATTCTCGTCCACCATGTGTCAATAATGATGGATTCAGGGTATGTGCTGGCTGCAACAGGAATATTGAGCGTGGGCGGTATTTAGAATGCATCGGAGCTTTTTGGCATCCTGAATGTTTTGTTTGCATCACTTGTAAACTTCCAATTACTGATCATGAGTTTTCTGTTTCCGAAGATAGCCCTTACCACGTATCGTGCTATAAGGCGCAGCACTTTCCAAACTGCGATGTTTGCAAGACTCTTATCCCTATTAGAAAATCAGACGGTCTTATTGAGTATAGGCAACATCCTTTCTGGCTACAAAAATACTGCCCCTCTCACGAGCGCGATGGAACTCCTAGGTGTTATAGCTGTGAAAGAATGGAGCCATGGGCGACCAAATATTTTTTACTTCCTGATGGTCGGAAGCAATGCTCGGAGTGTAATGACTCGGAAATTATGGATGATCACAAGTGCAATTCCCTTTTTCTTCAAGTACAAGCTTTCTTTGAAGATTTAGATATGAAATTTGAGCAGCAAATCCCAGTAATCTTGGTTGGGAGACGAACACTAAATAAGGACACCAAGGTAGAAAGGCTCGGTCATCACTACCTGCCAGAGACTAGAGCAGTTTTCTCGGCAGAACCTATCGTTACTAGTATTCTAAGGATGCTGAAGGGACACAGTAGAATAACATCAATTCGGATGCTGTATGGCCTTCCTAGGTTGCTCTCAGGGTCAATTCTGGCTGCATTGATGATGCACGCATGGCTAAGGCTGAATGGTTATCGGAATCTGAGCCCAGAGGTTGGATATGGTATCTACCAAGTGTTGGCCCATACGTGGCTGGACTCTGAGACGTCTTCGGGGTCTAGTTCGACAATGTCTAATGAAGGGAAGAAGCTTGGTGAATTTTTTAAATATTCAATTGAGACAAATACAACAATTTACGGGCAAGGATTCAGGGCAGGTAATCAAGCAGTGCTCAAGCATGGTCTAAGGAGGACTCTTGATCATATTCGAACCACAGGAGCTTTCCCCATTGACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

354

Amino Acids

40.4

Weight (kDa)

7.86

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	25 - 79	4.7e-11	LIM domain
DA1-like	PF12315	176 - 345	2.7e-44	Protein DA1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36860 AT4G36860 AT4G36860
fragaria_vesca	FvH4_1g14251 FvH4_1g14310 FvH4_1g14310 FvH4_1g14310 FvH4_1g14310 FvH4_1g14310
malus_domestica	MD02G1156700.v1.1 MD10G1020400.v1.1 MD15G1271000.v1.1
prunus_persica	Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1
pyrus_communis	pycom02g12360 pycom10g01270 pycom15g23490
rosa_chinensis	RchiOBHm_Chr2g0102971
rosa_multiflora	Rmu_sc0000388.1_g000036
rosa_roxburghii	Rroxscaffold_2G00140050
rosa_rugosa	Rorug02G0110800 Rorug02G0110900 Rorug02G0111000 Rorug02G0111000
rosa_samantha	Rh2AG159200 Rh2BG165700 Rh2CG165700 Rh2DG164500
rosa_wichuraiana	Rw2G012440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	872
Acc36I	ACCTGC	2 cut(s)	630, 968
AccB7I	CCANNNNNTGG	2 cut(s)	818, 841
AccII	CGCG	1 cut(s)	357
AciI	CCGC	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	536, 920
AcuI	CTGAAG	1 cut(s)	704
AcyI	GRCGYC	1 cut(s)	869
AdeI	CACNNNGTG	1 cut(s)	47
AfaI	GTAC	1 cut(s)	507
AfiI	CCNNNNNNNGG	3 cut(s)	818, 841, 852
AgsI	TTSAA	4 cut(s)	25, 503, 521, 936
AhlI	ACTAGT	1 cut(s)	665
AluBI	AGCT	5 cut(s)	128, 381, 512, 913, 1043
AluI	AGCT	5 cut(s)	128, 381, 512, 913, 1043
Alw21I	GWGCWC	1 cut(s)	996
Alw26I	GTCTC	4 cut(s)	565, 623, 860, 935
AoxI	GGCC	2 cut(s)	724, 843
ApeKI	GCWGC	4 cut(s)	81, 238, 544, 758
ApoI	RAATTY	2 cut(s)	536, 920
AspA2I	CCTAGG	2 cut(s)	368, 731
AspLEI	GCGC	2 cut(s)	238, 357
AspS9I	GGNCC	1 cut(s)	844
AsuHPI	GGTGA	1 cut(s)	929
AsuII	TTCGAA	1 cut(s)	1030
AvrII	CCTAGG	2 cut(s)	368, 731
BanII	GRGCYC	1 cut(s)	812
BauI	CACGAG	1 cut(s)	350
BbsI	GAAGAC	2 cut(s)	2, 864
Bbv12I	GWGCWC	1 cut(s)	996
BbvI	GCAGC	4 cut(s)	68, 250, 556, 745
BccI	CCATC	3 cut(s)	53, 353, 422
BcgI	CGANNNNNNTGC	2 cut(s)	627, 661
BclI	TGATCA	3 cut(s)	181, 475, 1021
BcoDI	GTCTC	4 cut(s)	565, 623, 860, 935
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	5 cut(s)	369, 633, 666, 732, 882
BfuAI	ACCTGC	2 cut(s)	630, 968
BisI	GCNGC	4 cut(s)	82, 239, 545, 759
BlnI	CCTAGG	2 cut(s)	368, 731
BlsI	GCNGC	4 cut(s)	83, 240, 546, 760
BmgT120I	GGNCC	1 cut(s)	844
BmiI	GGNNCC	1 cut(s)	396
BmrI	ACTGGG	1 cut(s)	548
BmsI	GCATC	6 cut(s)	129, 145, 165, 669, 705, 759
BmuI	ACTGGG	1 cut(s)	548
BpiI	GAAGAC	2 cut(s)	2, 864
Bpu10I	CCTNAGC	1 cut(s)	782
Bpu14I	TTCGAA	1 cut(s)	1030
BpuEI	CTTGAG	1 cut(s)	980
BsaAI	YACGTR	2 cut(s)	220, 852
BsaHI	GRCGYC	1 cut(s)	869
BsaJI	CCNNGG	4 cut(s)	368, 398, 594, 731
Bsc4I	CCNNNNNNNGG	3 cut(s)	818, 841, 852
Bse1I	ACTGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	446
BseDI	CCNNGG	4 cut(s)	368, 398, 594, 731
BseGI	GGATG	5 cut(s)	136, 316, 478, 684, 720
BseLI	CCNNNNNNNGG	3 cut(s)	818, 841, 852
BseMI	GCAATG	1 cut(s)	446
BseMII	CTCAG	3 cut(s)	756, 797, 855
BseNI	ACTGG	1 cut(s)	554
BseXI	GCAGC	4 cut(s)	68, 250, 556, 745
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	726, 845
BsiHKAI	GWGCWC	1 cut(s)	996
BslFI	GGGAC	1 cut(s)	702
BslI	CCNNNNNNNGG	3 cut(s)	818, 841, 852
BsmAI	GTCTC	4 cut(s)	565, 623, 860, 935
BsmBI	CGTCTC	2 cut(s)	565, 860
BsmFI	GGGAC	1 cut(s)	702
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	726, 845
Bsp119I	TTCGAA	1 cut(s)	1030
Bsp1286I	GDGCHC	2 cut(s)	812, 996
Bsp143I	GATC	3 cut(s)	181, 475, 1021
Bsp19I	CCATGG	1 cut(s)	398
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	2 cut(s)	726, 845
BspCNI	CTCAG	3 cut(s)	755, 798, 856
BspFNI	CGCG	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	396
BspMI	ACCTGC	2 cut(s)	630, 968
BspT104I	TTCGAA	1 cut(s)	1030
BsrDI	GCAATG	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	554
BssECI	CCNNGG	4 cut(s)	368, 398, 594, 731
BssMI	GATC	3 cut(s)	181, 475, 1021
BssNI	GRCGYC	1 cut(s)	869
BssSI	CACGAG	1 cut(s)	350
BssT1I	CCWWGG	4 cut(s)	368, 398, 594, 731
Bst2BI	CACGAG	1 cut(s)	350
Bst4CI	ACNGT	3 cut(s)	8, 296, 695
BstACI	GRCGYC	1 cut(s)	869
BstBAI	YACGTR	2 cut(s)	220, 852
BstBI	TTCGAA	1 cut(s)	1030
BstC8I	GCNNGC	2 cut(s)	79, 774
BstDEI	CTNAG	6 cut(s)	674, 742, 782, 806, 864, 1007
BstDSI	CCRYGG	1 cut(s)	398
BstF5I	GGATG	5 cut(s)	136, 316, 478, 684, 720
BstFNI	CGCG	1 cut(s)	357
BstHHI	GCGC	2 cut(s)	238, 357
BstKTI	GATC	3 cut(s)	184, 478, 1024
BstMAI	GTCTC	4 cut(s)	565, 623, 860, 935
BstMBI	GATC	3 cut(s)	181, 475, 1021
BstMWI	GCNNNNNNNGC	2 cut(s)	261, 778
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	4 cut(s)	68, 250, 556, 745
BstV2I	GAAGAC	2 cut(s)	2, 864
BsuRI	GGCC	2 cut(s)	726, 845
BtgI	CCRYGG	1 cut(s)	398
BtgZI	GCGATG	2 cut(s)	270, 372
BtsCI	GGATG	5 cut(s)	136, 316, 478, 684, 720
BtsI	GCAGTG	1 cut(s)	996
BtsIMutI	CAGTG	1 cut(s)	996
BveI	ACCTGC	2 cut(s)	630, 968
Cac8I	GCNNGC	2 cut(s)	79, 774
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	2 cut(s)	238, 357
Cfr13I	GGNCC	1 cut(s)	844
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	5 cut(s)	45, 185, 399, 777, 1001
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	6 cut(s)	674, 742, 782, 806, 864, 1007
DpnI	GATC	3 cut(s)	183, 477, 1023
DpnII	GATC	3 cut(s)	181, 475, 1021
DraI	TTTAAA	1 cut(s)	928
DraIII	CACNNNGTG	1 cut(s)	47
Eco130I	CCWWGG	4 cut(s)	368, 398, 594, 731
Eco24I	GRGCYC	1 cut(s)	812
Eco57I	CTGAAG	1 cut(s)	704
EcoT14I	CCWWGG	4 cut(s)	368, 398, 594, 731
EcoT22I	ATGCAT	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	812
ErhI	CCWWGG	4 cut(s)	368, 398, 594, 731
Esp3I	CGTCTC	2 cut(s)	565, 860
FaeI	CATG	5 cut(s)	48, 188, 402, 780, 1004
FaqI	GGGAC	1 cut(s)	702
FatI	CATG	5 cut(s)	44, 184, 398, 776, 1000
FbaI	TGATCA	3 cut(s)	181, 475, 1021
Fnu4HI	GCNGC	4 cut(s)	82, 239, 545, 759
FokI	GGATG	5 cut(s)	123, 303, 485, 691, 727
FriOI	GRGCYC	1 cut(s)	812
Fsp4HI	GCNGC	4 cut(s)	82, 239, 545, 759
FspBI	CTAG	5 cut(s)	369, 633, 666, 732, 882
GlaI	GCGC	2 cut(s)	237, 356
GluI	GCNGC	4 cut(s)	82, 239, 545, 759
HaeIII	GGCC	2 cut(s)	726, 845
HhaI	GCGC	2 cut(s)	238, 357
Hin1I	GRCGYC	1 cut(s)	869
Hin1II	CATG	5 cut(s)	48, 188, 402, 780, 1004
Hin6I	GCGC	2 cut(s)	236, 355
HinP1I	GCGC	2 cut(s)	236, 355
HindIII	AAGCTT	2 cut(s)	510, 911
HinfI	GANTC	8 cut(s)	32, 63, 268, 458, 802, 860, 969, 1015
HphI	GGTGA	1 cut(s)	929
Hpy166II	GTNNAC	2 cut(s)	41, 167
Hpy188III	TCNNGA	6 cut(s)	14, 140, 185, 350, 425, 1019
Hpy8I	GTNNAC	2 cut(s)	41, 167
HpyAV	CCTTC	3 cut(s)	679, 737, 896
HpyCH4III	ACNGT	3 cut(s)	8, 296, 695
HpyCH4IV	ACGT	3 cut(s)	219, 851, 869
HpyCH4V	TGCA	7 cut(s)	84, 120, 156, 264, 486, 761, 772
HpyF10VI	GCNNNNNNNGC	2 cut(s)	261, 778
HpyF3I	CTNAG	6 cut(s)	674, 742, 782, 806, 864, 1007
HpySE526I	ACGT	3 cut(s)	219, 851, 869
Hsp92I	GRCGYC	1 cut(s)	869
Hsp92II	CATG	5 cut(s)	48, 188, 402, 780, 1004
HspAI	GCGC	2 cut(s)	236, 355
Ksp22I	TGATCA	3 cut(s)	181, 475, 1021
Kzo9I	GATC	3 cut(s)	181, 475, 1021
LmnI	GCTCC	3 cut(s)	125, 394, 1040
Lsp1109I	GCAGC	4 cut(s)	68, 250, 556, 745
LweI	GCATC	6 cut(s)	129, 145, 165, 669, 705, 759
MaeI	CTAG	5 cut(s)	369, 633, 666, 732, 882
MaeII	ACGT	3 cut(s)	219, 851, 869
MaeIII	GTNAC	1 cut(s)	661
MalI	GATC	3 cut(s)	183, 477, 1023
MboI	GATC	3 cut(s)	181, 475, 1021
MboII	GAAGA	5 cut(s)	215, 491, 533, 864, 919
MfeI	CAATTG	1 cut(s)	936
MhlI	GDGCHC	2 cut(s)	812, 996
MluCI	AATT	9 cut(s)	174, 465, 487, 536, 708, 750, 920, 936, 954
MlyI	GAGTC	4 cut(s)	262, 452, 854, 1009
MmeI	TCCRAC	2 cut(s)	413, 799
MnlI	CCTC	3 cut(s)	355, 808, 1005
Mph1103I	ATGCAT	1 cut(s)	122
MseI	TTAA	1 cut(s)	927
MunI	CAATTG	1 cut(s)	936
Mva1269I	GAATGC	1 cut(s)	122
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	261, 778
NcoI	CCATGG	1 cut(s)	398
NdeII	GATC	3 cut(s)	181, 475, 1021
NlaIII	CATG	5 cut(s)	48, 188, 402, 780, 1004
NlaIV	GGNNCC	1 cut(s)	396
NmeAIII	GCCGAG	1 cut(s)	626
NsiI	ATGCAT	1 cut(s)	122
NspV	TTCGAA	1 cut(s)	1030
PagI	TCATGA	1 cut(s)	184
PctI	GAATGC	1 cut(s)	122
PfeI	GAWTC	4 cut(s)	32, 63, 802, 969
PflFI	GACNNNGTC	1 cut(s)	892
PflMI	CCANNNNNTGG	2 cut(s)	818, 841
PkrI	GCNGC	4 cut(s)	83, 240, 546, 760
PleI	GAGTC	4 cut(s)	262, 452, 854, 1009
PpsI	GAGTC	4 cut(s)	262, 452, 854, 1009
Ppu21I	YACGTR	2 cut(s)	220, 852
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	844
PsyI	GACNNNGTC	1 cut(s)	892
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
SaqAI	TTAA	1 cut(s)	927
SatI	GCNGC	4 cut(s)	82, 239, 545, 759
Sau3AI	GATC	3 cut(s)	181, 475, 1021
Sau96I	GGNCC	1 cut(s)	844
SchI	GAGTC	4 cut(s)	262, 452, 854, 1009
SduI	GDGCHC	2 cut(s)	812, 996
SfaNI	GCATC	6 cut(s)	129, 145, 165, 669, 705, 759
SfuI	TTCGAA	1 cut(s)	1030
SmlI	CTYRAG	1 cut(s)	995
SmoI	CTYRAG	1 cut(s)	995
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	9 cut(s)	174, 465, 487, 536, 708, 750, 920, 936, 954
SsiI	CCGC	1 cut(s)	106
SspI	AATATT	3 cut(s)	94, 413, 932
SspMI	CTAG	5 cut(s)	369, 633, 666, 732, 882
StyI	CCWWGG	4 cut(s)	368, 398, 594, 731
TaaI	ACNGT	3 cut(s)	8, 296, 695
TaiI	ACGT	3 cut(s)	222, 854, 872
TaqI	TCGA	2 cut(s)	887, 1030
TaqII	GACCGA	1 cut(s)	599
TasI	AATT	9 cut(s)	174, 465, 487, 536, 708, 750, 920, 936, 954
TatI	WGTACW	1 cut(s)	505
TfiI	GAWTC	4 cut(s)	32, 63, 802, 969
Tru1I	TTAA	1 cut(s)	927
Tru9I	TTAA	1 cut(s)	927
TscAI	CASTG	1 cut(s)	996
TseI	GCWGC	4 cut(s)	81, 238, 544, 758
TspDTI	ATGAA	3 cut(s)	17, 548, 915
TspRI	CASTG	1 cut(s)	996
Tth111I	GACNNNGTC	1 cut(s)	892
Van91I	CCANNNNNTGG	2 cut(s)	818, 841
XapI	RAATTY	2 cut(s)	536, 920
XmaJI	CCTAGG	2 cut(s)	368, 731
XspI	CTAG	5 cut(s)	369, 633, 666, 732, 882
ZraI	GACGTC	1 cut(s)	870
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.