MD02G1156700.v1.1

DA1-related 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
13025963 .. 13031186
5224 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1156700.v1.1.491

Sequence Viewer

Length: 1626 bp
ATGGGTTGGCTGACTAAGATTCTGAAAGGTTCTAGCTATAAAGGGCATTCTCATAGGAAATTTAGAGAGGATAGAACATGGGACGAGCCTCGTAATTCAGTGGAAGAAGACATAGATGTTGCTATTGCAATGTCCCTTTCGGAACTAGATCAAAAAGGGAAAAGTGTAATCGAAGATGATTCTCAATCAGAGGATGACGAACAACCTTATAAAGTTGAATCAGACGATGATGAACGATCAGCCAAAGTTGAATCAGATGATGATGAACGATCTGCCAAAGTTGAATCAGATGATGATGCACAATCTGCCAAAGTTCAGTCGGACGATGATGAAAAACCTGCCAAATTTGACTACGAGGAAGATGAACAAAGTGCTAAACTTCAATTGGAGGAAGATGAACAACTTGCAAAGGCTATTCAAGAAAGTTTGAACGTGGGTTCTCCTCCTCGACATGATAATGGCAATATATTTCATCCTTTTTCATTCTTCACGCCAGCTGGGAACAGGATATGTGCTGGCTGCAAATCAGGAATTGGCCATGGGCGATATTTGAGTTGCATGGGTACTGTTTGGCATCCAGAATGTTTCCGTTGCCGTGCTTGCAATCTTCCAATTACTGATTATGAGTATTCGATGTCTGGGAATCACCCTTACCACAAATCCTGCTATAAGGAGAAGCATCACCCAAAATGCGATGTTTGCAAGAGTTTCATCCCAACAAATTCAGCTGGGCTTATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAGTACTGTCCTGCTCATGAGCGCGATGGGACTCCTCGGTGTTGTAGCTGTGAAAGAATGGAGGCACGGGACACAAGATATTTGTTACTTGACGATGGTCGGAAGCTATGTCTGGAGTGTCTAGACTCAGCAATTATGGATACTCATGAATGCCAACCCCTTTACCTTGAGATACAAGACTTTTACGAAGGTTTAAACATGAAAGTGAAGCAGCAAGTTCCAATGCTCTTGGTCGAGAGGCAAGCTCTAAACGAGGCTATGGAGGGAGAAAAGAATGGTCATCATCACATGCCGGAGACTAGAGGACTCTGCTTGTCAGAAGAGCAGACTGTCACTACTATTTTACGGAGGCCAAGGATTGGAGCTGGCTACCGGCTGATAGACATGGTTACTGAGCCTCATAGGCTGATTCGTCGCTGTGAAGTAACAGCAATTCTTGTACTGTATGGCCTTCCTAGGTTGTTGACAGGGTCAATTCTCGCTCATGAGATGATGCATGCATGGCTGAGGCTTAACGGCTATCCGAACCTGAGCCCAGAGGTAGAAGAAGGTATCTGCCAAGTGTTAGCACACATGTGGCTGGATGCTGAGACATATTCTACACCGGGTAGTGATATTGCCTCATCATCATCCTCTTCTTCCTCTTCCTCGTCATCCTCTTCTAGTTCGGCATCATCTAAGAAGGGTAAACGGTCTGACTTTGAGAAGAAACTCGGGGAATTTTTCAAACACCAAATTGAGTCGGATTCATCAACAGCTTACGGAGAAGGATTCAGGATAGGTAACCAAGCAGTGCTCAAGTATGGTCTGAGGAGGACCCTCGACCATATTAGATTGGTCGGAAAATTTCCCGAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

542

Amino Acids

61.3

Weight (kDa)

5.42

Isoelectric Point (pI)

56.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIM PF00412 171 - 226 2.1e-10 LIM domain
DA1-like PF12315 320 - 535 1.1e-104 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
Acc36I ACCTGC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 1127
AccII CGCG 1 cut(s) 792
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 5 cut(s) 59, 344, 721, 1487, 1613
AfaI GTAC 3 cut(s) 565, 773, 1209
AfiI CCNNNNNNNGG 1 cut(s) 1127
AflIII ACRYGT 1 cut(s) 1341
AgsI TTSAA 7 cut(s) 218, 251, 284, 383, 419, 430, 1495
AleI CACNNNNGTG 1 cut(s) 1342
AluBI AGCT 8 cut(s) 36, 497, 728, 816, 874, 1013, 1133, 1526
AluI AGCT 8 cut(s) 36, 497, 728, 816, 874, 1013, 1133, 1526
Alw21I GWGCWC 2 cut(s) 751, 1566
Alw26I GTCTC 2 cut(s) 1058, 1352
Ama87I CYCGRG 2 cut(s) 1481, 1619
AoxI GGCC 3 cut(s) 535, 1118, 1216
ApeKI GCWGC 2 cut(s) 519, 979
ApoI RAATTY 5 cut(s) 59, 344, 721, 1487, 1613
ArsI GACNNNNNNTTYG 2 cut(s) 760, 792
AspA2I CCTAGG 1 cut(s) 1223
AspLEI GCGC 1 cut(s) 792
AspS9I GGNCC 1 cut(s) 1584
AsuC2I CCSGG 1 cut(s) 1374
AsuHPI GGTGA 2 cut(s) 638, 674
AvaI CYCGRG 2 cut(s) 1481, 1619
AvaII GGWCC 1 cut(s) 1584
AvrII CCTAGG 1 cut(s) 1223
BalI TGGCCA 1 cut(s) 537
BanII GRGCYC 1 cut(s) 1304
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 751, 1566
BbvCI CCTCAGC 1 cut(s) 1274
BbvI GCAGC 2 cut(s) 506, 991
BccI CCATC 2 cut(s) 788, 857
BceAI ACGGC 2 cut(s) 579, 1300
BciVI GTATCC 1 cut(s) 901
BcnI CCSGG 1 cut(s) 1374
BcoDI GTCTC 2 cut(s) 1058, 1352
BfaI CTAG 6 cut(s) 33, 146, 890, 1068, 1224, 1431
BfuAI ACCTGC 1 cut(s) 346
BfuI GTATCC 1 cut(s) 901
BglI GCCNNNNNGGC 1 cut(s) 1171
BisI GCNGC 2 cut(s) 520, 980
BlnI CCTAGG 1 cut(s) 1223
BlsI GCNGC 2 cut(s) 521, 981
BmcAI AGTACT 1 cut(s) 773
Bme1390I CCNGG 1 cut(s) 1374
Bme18I GGWCC 1 cut(s) 1584
BmeT110I CYCGRG 2 cut(s) 1481, 1619
BmgT120I GGNCC 1 cut(s) 1584
BmiI GGNNCC 1 cut(s) 1586
BmrFI CCNGG 1 cut(s) 1374
BmsI GCATC 6 cut(s) 286, 583, 688, 1251, 1342, 1448
BoxI GACNNNNGTC 1 cut(s) 864
BpiI GAAGAC 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 997, 1029
BpmI CTGGAG 1 cut(s) 902
Bpu10I CCTNAGC 2 cut(s) 1274, 1298
BpuEI CTTGAG 2 cut(s) 956, 1550
BpuMI CCSGG 1 cut(s) 1374
BsaJI CCNNGG 4 cut(s) 538, 803, 1121, 1223
Bsc4I CCNNNNNNNGG 1 cut(s) 1127
Bse118I RCCGGY 1 cut(s) 1140
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 4 cut(s) 538, 803, 1121, 1223
BseGI GGATG 8 cut(s) 199, 472, 574, 711, 751, 1357, 1397, 1421
BseLI CCNNNNNNNGG 1 cut(s) 1127
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 6 cut(s) 909, 1152, 1265, 1289, 1347, 1568
BseRI GAGGAG 4 cut(s) 432, 435, 792, 1594
BseXI GCAGC 2 cut(s) 506, 991
BseYI CCCAGC 2 cut(s) 497, 728
Bsh1236I CGCG 1 cut(s) 792
BshFI GGCC 3 cut(s) 537, 1120, 1218
BsiHKAI GWGCWC 2 cut(s) 751, 1566
BsiHKCI CYCGRG 2 cut(s) 1481, 1619
BsiSI CCGG 3 cut(s) 1061, 1141, 1373
BslFI GGGAC 4 cut(s) 95, 118, 811, 851
BslI CCNNNNNNNGG 1 cut(s) 1127
BsmAI GTCTC 2 cut(s) 1058, 1352
BsmFI GGGAC 4 cut(s) 95, 118, 811, 851
BsmI GAATGC 2 cut(s) 46, 923
BsnI GGCC 3 cut(s) 537, 1120, 1218
BsoBI CYCGRG 2 cut(s) 1481, 1619
Bsp1286I GDGCHC 3 cut(s) 751, 1304, 1566
Bsp143I GATC 3 cut(s) 148, 236, 269
Bsp19I CCATGG 1 cut(s) 538
BspANI GGCC 3 cut(s) 537, 1120, 1218
BspCNI CTCAG 6 cut(s) 908, 1153, 1266, 1290, 1348, 1569
BspFNI CGCG 1 cut(s) 792
BspHI TCATGA 3 cut(s) 784, 913, 1252
BspLI GGNNCC 1 cut(s) 1586
BspMI ACCTGC 1 cut(s) 346
BspQI GCTCTTC 1 cut(s) 1083
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 1140
BssAI RCCGGY 1 cut(s) 1140
BssECI CCNNGG 4 cut(s) 538, 803, 1121, 1223
BssMI GATC 3 cut(s) 148, 236, 269
BssT1I CCWWGG 3 cut(s) 538, 1121, 1223
Bst4CI ACNGT 5 cut(s) 568, 776, 1099, 1212, 1461
Bst6I CTCTTC 4 cut(s) 1083, 1408, 1417, 1432
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 6 cut(s) 495, 517, 601, 1011, 1135, 1266
BstDEI CTNAG 8 cut(s) 15, 895, 1161, 1274, 1298, 1356, 1446, 1577
BstDSI CCRYGG 1 cut(s) 538
BstEII GGTNACC 1 cut(s) 1550
BstF5I GGATG 8 cut(s) 199, 472, 574, 711, 751, 1357, 1397, 1421
BstFNI CGCG 1 cut(s) 792
BstHHI GCGC 1 cut(s) 792
BstKTI GATC 3 cut(s) 151, 239, 272
BstMAI GTCTC 2 cut(s) 1058, 1352
BstMBI GATC 3 cut(s) 148, 236, 269
BstMWI GCNNNNNNNGC 5 cut(s) 305, 600, 699, 1171, 1270
BstNSI RCATGY 3 cut(s) 1060, 1268, 1345
BstPAI GACNNNNGTC 1 cut(s) 864
BstPI GGTNACC 1 cut(s) 1550
BstSCI CCNGG 1 cut(s) 1372
BstUI CGCG 1 cut(s) 792
BstV1I GCAGC 2 cut(s) 506, 991
BstV2I GAAGAC 1 cut(s) 114
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 3 cut(s) 537, 1120, 1218
BtgI CCRYGG 1 cut(s) 538
BtgZI GCGATG 2 cut(s) 708, 807
BtsCI GGATG 8 cut(s) 199, 472, 574, 711, 751, 1357, 1397, 1421
BtsI GCAGTG 1 cut(s) 1566
BtsIMutI CAGTG 2 cut(s) 105, 1566
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 6 cut(s) 495, 517, 601, 1011, 1135, 1266
CciI TCATGA 3 cut(s) 784, 913, 1252
CfoI GCGC 1 cut(s) 792
Cfr10I RCCGGY 1 cut(s) 1140
Cfr13I GGNCC 1 cut(s) 1584
Csp6I GTAC 3 cut(s) 564, 772, 1208
CviQI GTAC 3 cut(s) 564, 772, 1208
DdeI CTNAG 8 cut(s) 15, 895, 1161, 1274, 1298, 1356, 1446, 1577
DpnI GATC 3 cut(s) 150, 238, 271
DpnII GATC 3 cut(s) 148, 236, 269
DraI TTTAAA 1 cut(s) 963
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 4 cut(s) 1083, 1408, 1417, 1432
EarI CTCTTC 4 cut(s) 1083, 1408, 1417, 1432
Eco130I CCWWGG 3 cut(s) 538, 1121, 1223
Eco24I GRGCYC 1 cut(s) 1304
Eco47I GGWCC 1 cut(s) 1584
Eco88I CYCGRG 2 cut(s) 1481, 1619
Eco91I GGTNACC 1 cut(s) 1550
EcoO109I RGGNCCY 1 cut(s) 1584
EcoO65I GGTNACC 1 cut(s) 1550
EcoT14I CCWWGG 3 cut(s) 538, 1121, 1223
EcoT22I ATGCAT 2 cut(s) 1266, 1270
EcoT38I GRGCYC 1 cut(s) 1304
ErhI CCWWGG 3 cut(s) 538, 1121, 1223
FaqI GGGAC 4 cut(s) 95, 118, 811, 851
Fnu4HI GCNGC 2 cut(s) 520, 980
FokI GGATG 8 cut(s) 206, 459, 561, 698, 738, 1364, 1384, 1408
FriOI GRGCYC 1 cut(s) 1304
Fsp4HI GCNGC 2 cut(s) 520, 980
FspBI CTAG 6 cut(s) 33, 146, 890, 1068, 1224, 1431
GlaI GCGC 1 cut(s) 791
GluI GCNGC 2 cut(s) 520, 980
GsaI CCCAGC 2 cut(s) 501, 732
GsuI CTGGAG 1 cut(s) 902
HaeIII GGCC 3 cut(s) 537, 1120, 1218
HapII CCGG 3 cut(s) 1061, 1141, 1373
HhaI GCGC 1 cut(s) 792
Hin6I GCGC 1 cut(s) 790
HinP1I GCGC 1 cut(s) 790
HincII GTYRAC 1 cut(s) 1233
HindII GTYRAC 1 cut(s) 1233
HpaII CCGG 3 cut(s) 1061, 1141, 1373
HphI GGTGA 2 cut(s) 638, 674
Hpy166II GTNNAC 2 cut(s) 1233, 1457
Hpy8I GTNNAC 2 cut(s) 1233, 1457
Hpy99I CGWCG 1 cut(s) 1185
HpyAV CCTTC 5 cut(s) 950, 1229, 1310, 1444, 1529
HpyCH4III ACNGT 5 cut(s) 568, 776, 1099, 1212, 1461
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 9 cut(s) 128, 299, 407, 522, 558, 603, 702, 1264, 1268
HpyF10VI GCNNNNNNNGC 5 cut(s) 305, 600, 699, 1171, 1270
HpyF3I CTNAG 8 cut(s) 15, 895, 1161, 1274, 1298, 1356, 1446, 1577
HpySE526I ACGT 1 cut(s) 432
HspAI GCGC 1 cut(s) 790
Kzo9I GATC 3 cut(s) 148, 236, 269
LguI GCTCTTC 1 cut(s) 1083
LmnI GCTCC 1 cut(s) 1130
Lsp1109I GCAGC 2 cut(s) 506, 991
LweI GCATC 6 cut(s) 286, 583, 688, 1251, 1342, 1448
MaeI CTAG 6 cut(s) 33, 146, 890, 1068, 1224, 1431
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 5 cut(s) 852, 1099, 1156, 1192, 1550
MalI GATC 3 cut(s) 150, 238, 271
MboI GATC 3 cut(s) 148, 236, 269
MfeI CAATTG 1 cut(s) 383
MhlI GDGCHC 3 cut(s) 751, 1304, 1566
MlsI TGGCCA 1 cut(s) 537
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 4 cut(s) 793, 887, 1068, 1517
MmeI TCCRAC 4 cut(s) 300, 848, 1491, 1588
Mox20I TGGCCA 1 cut(s) 537
Mph1103I ATGCAT 2 cut(s) 1266, 1270
MscI TGGCCA 1 cut(s) 537
MseI TTAA 2 cut(s) 962, 1281
MslI CAYNNNNRTG 3 cut(s) 456, 971, 1342
Msp20I TGGCCA 1 cut(s) 537
MspA1I CMGCKG 2 cut(s) 497, 728
MspI CCGG 3 cut(s) 1061, 1141, 1373
MspR9I CCNGG 1 cut(s) 1374
MssI GTTTAAAC 1 cut(s) 963
MunI CAATTG 1 cut(s) 383
Mva1269I GAATGC 2 cut(s) 46, 923
MvnI CGCG 1 cut(s) 792
MwoI GCNNNNNNNGC 5 cut(s) 305, 600, 699, 1171, 1270
NciI CCSGG 1 cut(s) 1374
NcoI CCATGG 1 cut(s) 538
NdeII GATC 3 cut(s) 148, 236, 269
NlaIV GGNNCC 1 cut(s) 1586
NmuCI GTSAC 1 cut(s) 1099
NsiI ATGCAT 2 cut(s) 1266, 1270
NspI RCATGY 3 cut(s) 1060, 1268, 1345
OliI CACNNNNGTG 1 cut(s) 1342
PaeI GCATGC 1 cut(s) 1268
PagI TCATGA 3 cut(s) 784, 913, 1252
PciI ACATGT 1 cut(s) 1341
PciSI GCTCTTC 1 cut(s) 1083
PctI GAATGC 2 cut(s) 46, 923
PfeI GAWTC 9 cut(s) 19, 179, 218, 251, 284, 643, 1177, 1514, 1539
PflFI GACNNNGTC 1 cut(s) 1237
PflMI CCANNNNNTGG 1 cut(s) 1127
PkrI GCNGC 2 cut(s) 521, 981
PleI GAGTC 4 cut(s) 793, 887, 1068, 1516
PmeI GTTTAAAC 1 cut(s) 963
PpsI GAGTC 4 cut(s) 793, 887, 1068, 1516
PpuMI RGGWCCY 1 cut(s) 1584
PscI ACATGT 1 cut(s) 1341
PshAI GACNNNNGTC 1 cut(s) 864
PsiI TTATAA 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 1584
PspEI GGTNACC 1 cut(s) 1550
PspFI CCCAGC 2 cut(s) 497, 728
PspN4I GGNNCC 1 cut(s) 1586
PspPI GGNCC 1 cut(s) 1584
PspPPI RGGWCCY 1 cut(s) 1584
PsyI GACNNNGTC 1 cut(s) 1237
PvuII CAGCTG 2 cut(s) 497, 728
RsaI GTAC 3 cut(s) 565, 773, 1209
RsaNI GTAC 3 cut(s) 564, 772, 1208
RseI CAYNNNNRTG 3 cut(s) 456, 971, 1342
SapI GCTCTTC 1 cut(s) 1083
SaqAI TTAA 2 cut(s) 962, 1281
SatI GCNGC 2 cut(s) 520, 980
Sau3AI GATC 3 cut(s) 148, 236, 269
Sau96I GGNCC 1 cut(s) 1584
ScaI AGTACT 1 cut(s) 773
SchI GAGTC 4 cut(s) 793, 887, 1068, 1517
ScrFI CCNGG 1 cut(s) 1374
SduI GDGCHC 3 cut(s) 751, 1304, 1566
SfaNI GCATC 6 cut(s) 286, 583, 688, 1251, 1342, 1448
SinI GGWCC 1 cut(s) 1584
SmiMI CAYNNNNRTG 3 cut(s) 456, 971, 1342
SmlI CTYRAG 2 cut(s) 935, 1565
SmoI CTYRAG 2 cut(s) 935, 1565
SphI GCATGC 1 cut(s) 1268
SspMI CTAG 6 cut(s) 33, 146, 890, 1068, 1224, 1431
StyD4I CCNGG 1 cut(s) 1372
StyI CCWWGG 3 cut(s) 538, 1121, 1223
TaaI ACNGT 5 cut(s) 568, 776, 1099, 1212, 1461
TaiI ACGT 1 cut(s) 435
TaqI TCGA 5 cut(s) 171, 448, 632, 1002, 1590
TatI WGTACW 2 cut(s) 771, 1207
TfiI GAWTC 9 cut(s) 19, 179, 218, 251, 284, 643, 1177, 1514, 1539
Tru1I TTAA 2 cut(s) 962, 1281
Tru9I TTAA 2 cut(s) 962, 1281
TscAI CASTG 2 cut(s) 105, 1566
TseFI GTSAC 1 cut(s) 1099
TseI GCWGC 2 cut(s) 519, 979
Tsp45I GTSAC 1 cut(s) 1099
TspGWI ACGGA 3 cut(s) 578, 1129, 1545
TspRI CASTG 2 cut(s) 105, 1566
Tth111I GACNNNGTC 1 cut(s) 1237
Van91I CCANNNNNTGG 1 cut(s) 1127
VpaK11BI GGWCC 1 cut(s) 1584
XapI RAATTY 5 cut(s) 59, 344, 721, 1487, 1613
XbaI TCTAGA 1 cut(s) 889
XceI RCATGY 3 cut(s) 1060, 1268, 1345
XmaJI CCTAGG 1 cut(s) 1223
XspI CTAG 6 cut(s) 33, 146, 890, 1068, 1224, 1431
ZrmI AGTACT 1 cut(s) 773
Zsp2I ATGCAT 2 cut(s) 1266, 1270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.