MD15G1271000.v1.1

DA1-related 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
23512117 .. 23517421
5305 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1271000.v1.1.491

Sequence Viewer

Length: 1602 bp
ATGGGTTGGCTAACTAAGATTCTTAAAGGTTCTAGCCATAAGGGGCATTCTCATAAGAAATTTAGAGAGGATAGAACATGGGACGAGCCTCGTAATTCAGTGGAAGAAGACATAGATGTTGCTATTGCACTGTCCCTTTCAGAACTAGATCAAAAAGGAAAAAATGTAATCGAAGATGAATCGCAATCAGAGGATGACGAACAACCGGCTAAAGTTGAATCACACGATGATGAACAATCATCTGAAGTTGAATCAGACGATGATGAACGATCTGCCGAAGTTGAATCAGATGATGATGCTCGATCTGCCAAAGTTCAGTCGGACGATGATGAAAATCCTGCAAAATTTCACTACGAGGAAGATGAACAAAGTGCTAAAGTTCAATTGGAGGAAGATGAACAACTTGCAAAGGCTATTCAAGAAAGTTTGAACATGGGTTCTCCTCCTCGACATGATAATGGCAACATATCTCAACCTTTTTCATTCTTCACGCCAGCTGGGTACAGGACATGTGCTGGCTGCAAGTTGGGAATTGGCCATGGACGATATTTGAGTTGCATGGGTGCTGTTTGGCATCCAGAATGCTTCCGTTGCCGTGCTTGCAATCTTCCAATTACTGATTATGAGTATTCTATGTCTGGGAATCACCCTTACCACAAATCCTGCTATAAGGAGCAGCATCACCCAAAATGCGATGTTTGCAAGAGTTTCATCCCAACAAATTCAGCCGGGCTTATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATACTGTCCTGCTCATGAGCGTGATAGGACCCCTCGGTGTTGTAGCTGTGAAAGAATGGAGCCCCGAGACACAAGATATTTGTTACTTGACGATGGTCGGAAGCTGTGTCTGGAGTGTCTAGACTCAGCAATTATGGACACTCACGAATGTCAACCCCTTTACCTTGAAATACAAGATTTTTATGAAGGTTTAAACATGAAAGTGAAGCAGCAAGTTCCAATGCTCTTGGTCGAGAGACAAGCTCTAAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCATCACATGCCGGAGACTAGAGGACTCTGCTTGTCAGAAGAACAGACCGTTACTACTATTCTGAGGAGGCCAAAGATTGGAGATGGCTACCGGATGATAGACATGGTAACTGAGCCTCATAGGTTGATTCGTCGCTGTGAAGTAACAGCAATTCTTGTGTTGTATGGCCTTCCTAGGTTGTTGACAGGGTCAATTCTGGCTCATGAGATGATGCACGCATGGCTAAGGCTTAACGGCTATCCAAACCTGAGCCCAGAGGTCGAAGAAGGTATCTGCCAAGTGCTAGCACATATGTGGCTGGACGCCGAGACGTATTCTACACCAGGTAGTGATGTTGCCTCATCATCATCCTCTTCTAGTTCGGCTTCATCTAAGAAGGGTAAACGCTCTGACTTTGAGAAAAAACTCGGTAAATTTTTCAAACACCAAATTGAGTCGGATTCATCAACAGCTTACGGAGAAGGTTTCAGGATAGGTAACCAAGCTGTGCTCAAGTTTGGTCTGAGGAGGACCCTCGACCATATTCGATTGATCGGAAATTTTCCCGAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

534

Amino Acids

60.64

Weight (kDa)

5.36

Isoelectric Point (pI)

57.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIM PF00412 171 - 226 7.8e-10 LIM domain
DA1-like PF12315 320 - 527 2.3e-102 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1127
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 5 cut(s) 59, 344, 721, 1463, 1588
AcuI CTGAAG 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 1353
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 1 cut(s) 1127
AflIII ACRYGT 1 cut(s) 509
AgsI TTSAA 8 cut(s) 218, 251, 284, 383, 419, 430, 938, 1471
AjnI CCWGG 1 cut(s) 1372
AleI CACNNNNGTG 1 cut(s) 1342
AluBI AGCT 6 cut(s) 497, 816, 874, 1013, 1502, 1535
AluI AGCT 6 cut(s) 497, 816, 874, 1013, 1502, 1535
Alw21I GWGCWC 2 cut(s) 751, 1542
Alw26I GTCTC 4 cut(s) 831, 1000, 1058, 1352
Ama87I CYCGRG 2 cut(s) 834, 1595
AoxI GGCC 4 cut(s) 535, 1023, 1118, 1216
ApeKI GCWGC 3 cut(s) 519, 676, 979
ApoI RAATTY 5 cut(s) 59, 344, 721, 1463, 1588
ArsI GACNNNNNNTTYG 2 cut(s) 760, 792
AspA2I CCTAGG 1 cut(s) 1223
AspS9I GGNCC 2 cut(s) 798, 1560
AsuC2I CCSGG 1 cut(s) 730
AsuHPI GGTGA 2 cut(s) 638, 674
AsuNHI GCTAGC 1 cut(s) 1333
AvaI CYCGRG 2 cut(s) 834, 1595
AvaII GGWCC 2 cut(s) 798, 1560
AvrII CCTAGG 1 cut(s) 1223
BalI TGGCCA 1 cut(s) 537
BanII GRGCYC 2 cut(s) 834, 1304
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 751, 1542
BbvI GCAGC 3 cut(s) 506, 688, 991
BccI CCATC 2 cut(s) 857, 1127
BceAI ACGGC 2 cut(s) 579, 1300
BciT130I CCWGG 1 cut(s) 1374
BcnI CCSGG 1 cut(s) 730
BcoDI GTCTC 4 cut(s) 831, 1000, 1058, 1352
BfaI CTAG 7 cut(s) 33, 146, 890, 1068, 1224, 1334, 1407
BisI GCNGC 3 cut(s) 520, 677, 980
BlnI CCTAGG 1 cut(s) 1223
BlsI GCNGC 3 cut(s) 521, 678, 981
Bme1390I CCNGG 2 cut(s) 730, 1374
Bme18I GGWCC 2 cut(s) 798, 1560
BmeT110I CYCGRG 2 cut(s) 834, 1595
BmgT120I GGNCC 2 cut(s) 798, 1560
BmiI GGNNCC 3 cut(s) 800, 831, 1562
BmrFI CCNGG 2 cut(s) 730, 1374
BmsI GCATC 4 cut(s) 286, 583, 688, 1251
BmtI GCTAGC 1 cut(s) 1337
BoxI GACNNNNGTC 1 cut(s) 864
BpiI GAAGAC 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 997, 1029
BpmI CTGGAG 1 cut(s) 902
Bpu10I CCTNAGC 2 cut(s) 1274, 1298
BpuEI CTTGAG 1 cut(s) 1526
BpuMI CCSGG 1 cut(s) 730
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 1353
BsaJI CCNNGG 4 cut(s) 538, 803, 1026, 1223
BsaWI WCCGGW 1 cut(s) 1140
Bsc4I CCNNNNNNNGG 1 cut(s) 1127
Bse118I RCCGGY 1 cut(s) 205
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 1 cut(s) 1374
BseDI CCNNGG 4 cut(s) 538, 803, 1026, 1223
BseGI GGATG 6 cut(s) 199, 574, 711, 751, 1149, 1397
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 1 cut(s) 1127
BseMII CTCAG 5 cut(s) 909, 1103, 1152, 1289, 1544
BseRI GAGGAG 4 cut(s) 432, 435, 1129, 1570
BseXI GCAGC 3 cut(s) 506, 688, 991
BseYI CCCAGC 1 cut(s) 497
BshFI GGCC 4 cut(s) 537, 1025, 1120, 1218
BsiHKAI GWGCWC 2 cut(s) 751, 1542
BsiHKCI CYCGRG 2 cut(s) 834, 1595
BsiSI CCGG 4 cut(s) 206, 729, 1061, 1141
BslFI GGGAC 2 cut(s) 95, 118
BslI CCNNNNNNNGG 1 cut(s) 1127
BsmAI GTCTC 4 cut(s) 831, 1000, 1058, 1352
BsmBI CGTCTC 1 cut(s) 1352
BsmFI GGGAC 2 cut(s) 95, 118
BsmI GAATGC 2 cut(s) 46, 587
BsnI GGCC 4 cut(s) 537, 1025, 1120, 1218
BsoBI CYCGRG 2 cut(s) 834, 1595
Bsp1286I GDGCHC 4 cut(s) 751, 834, 1304, 1542
Bsp143I GATC 4 cut(s) 148, 269, 302, 1581
Bsp19I CCATGG 2 cut(s) 538, 1026
BspANI GGCC 4 cut(s) 537, 1025, 1120, 1218
BspCNI CTCAG 5 cut(s) 908, 1104, 1153, 1290, 1545
BspHI TCATGA 2 cut(s) 784, 1252
BspLI GGNNCC 3 cut(s) 800, 831, 1562
BspOI GCTAGC 1 cut(s) 1337
BsrFI RCCGGY 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 4 cut(s) 538, 803, 1026, 1223
BssMI GATC 4 cut(s) 148, 269, 302, 1581
BssNI GRCGYC 1 cut(s) 1353
BssT1I CCWWGG 3 cut(s) 538, 1026, 1223
Bst2UI CCWGG 1 cut(s) 1374
Bst4CI ACNGT 3 cut(s) 132, 776, 1099
Bst6I CTCTTC 1 cut(s) 1408
BstACI GRCGYC 1 cut(s) 1353
BstC8I GCNNGC 5 cut(s) 495, 517, 601, 1266, 1335
BstDEI CTNAG 8 cut(s) 15, 895, 1112, 1161, 1274, 1298, 1422, 1553
BstDSI CCRYGG 2 cut(s) 538, 1026
BstEII GGTNACC 1 cut(s) 1526
BstF5I GGATG 6 cut(s) 199, 574, 711, 751, 1149, 1397
BstKTI GATC 4 cut(s) 151, 272, 305, 1584
BstMAI GTCTC 4 cut(s) 831, 1000, 1058, 1352
BstMBI GATC 4 cut(s) 148, 269, 302, 1581
BstMWI GCNNNNNNNGC 5 cut(s) 305, 591, 600, 699, 1270
BstNI CCWGG 1 cut(s) 1374
BstNSI RCATGY 2 cut(s) 513, 1060
BstPAI GACNNNNGTC 1 cut(s) 864
BstPI GGTNACC 1 cut(s) 1526
BstSCI CCNGG 2 cut(s) 728, 1372
BstV1I GCAGC 3 cut(s) 506, 688, 991
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 4 cut(s) 537, 1025, 1120, 1218
BtgI CCRYGG 2 cut(s) 538, 1026
BtgZI GCGATG 1 cut(s) 708
BtsCI GGATG 6 cut(s) 199, 574, 711, 751, 1149, 1397
BtsIMutI CAGTG 2 cut(s) 105, 128
Cac8I GCNNGC 5 cut(s) 495, 517, 601, 1266, 1335
CciI TCATGA 2 cut(s) 784, 1252
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 798, 1560
CseI GACGC 1 cut(s) 1361
CsiI ACCWGGT 1 cut(s) 1372
Csp6I GTAC 1 cut(s) 502
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 8 cut(s) 15, 895, 1112, 1161, 1274, 1298, 1422, 1553
DpnI GATC 4 cut(s) 150, 271, 304, 1583
DpnII GATC 4 cut(s) 148, 269, 302, 1581
DraI TTTAAA 1 cut(s) 963
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 1 cut(s) 1408
EarI CTCTTC 1 cut(s) 1408
Eco130I CCWWGG 3 cut(s) 538, 1026, 1223
Eco24I GRGCYC 2 cut(s) 834, 1304
Eco47I GGWCC 2 cut(s) 798, 1560
Eco57I CTGAAG 1 cut(s) 264
Eco88I CYCGRG 2 cut(s) 834, 1595
Eco91I GGTNACC 1 cut(s) 1526
EcoO109I RGGNCCY 2 cut(s) 798, 1560
EcoO65I GGTNACC 1 cut(s) 1526
EcoRII CCWGG 1 cut(s) 1372
EcoT14I CCWWGG 3 cut(s) 538, 1026, 1223
EcoT38I GRGCYC 2 cut(s) 834, 1304
ErhI CCWWGG 3 cut(s) 538, 1026, 1223
Esp3I CGTCTC 1 cut(s) 1352
FaqI GGGAC 2 cut(s) 95, 118
FauNDI CATATG 1 cut(s) 1341
Fnu4HI GCNGC 3 cut(s) 520, 677, 980
FokI GGATG 6 cut(s) 206, 561, 698, 738, 1156, 1384
FriOI GRGCYC 2 cut(s) 834, 1304
Fsp4HI GCNGC 3 cut(s) 520, 677, 980
FspBI CTAG 7 cut(s) 33, 146, 890, 1068, 1224, 1334, 1407
GluI GCNGC 3 cut(s) 520, 677, 980
GsaI CCCAGC 1 cut(s) 501
GsuI CTGGAG 1 cut(s) 902
HaeIII GGCC 4 cut(s) 537, 1025, 1120, 1218
HapII CCGG 4 cut(s) 206, 729, 1061, 1141
HgaI GACGC 1 cut(s) 1361
Hin1I GRCGYC 1 cut(s) 1353
HincII GTYRAC 2 cut(s) 923, 1233
HindII GTYRAC 2 cut(s) 923, 1233
HpaII CCGG 4 cut(s) 206, 729, 1061, 1141
HphI GGTGA 2 cut(s) 638, 674
Hpy166II GTNNAC 3 cut(s) 923, 1233, 1433
Hpy8I GTNNAC 3 cut(s) 923, 1233, 1433
Hpy99I CGWCG 1 cut(s) 1185
HpyAV CCTTC 5 cut(s) 950, 1229, 1310, 1420, 1505
HpyCH4III ACNGT 3 cut(s) 132, 776, 1099
HpyCH4IV ACGT 1 cut(s) 1361
HpyCH4V TGCA 8 cut(s) 128, 341, 407, 522, 558, 603, 702, 1264
HpyF10VI GCNNNNNNNGC 5 cut(s) 305, 591, 600, 699, 1270
HpyF3I CTNAG 8 cut(s) 15, 895, 1112, 1161, 1274, 1298, 1422, 1553
HpySE526I ACGT 1 cut(s) 1361
Hsp92I GRCGYC 1 cut(s) 1353
Kzo9I GATC 4 cut(s) 148, 269, 302, 1581
LmnI GCTCC 2 cut(s) 673, 829
Lsp1109I GCAGC 3 cut(s) 506, 688, 991
LweI GCATC 4 cut(s) 286, 583, 688, 1251
MabI ACCWGGT 1 cut(s) 1372
MaeI CTAG 7 cut(s) 33, 146, 890, 1068, 1224, 1334, 1407
MaeII ACGT 1 cut(s) 1361
MaeIII GTNAC 5 cut(s) 852, 1099, 1156, 1192, 1526
MalI GATC 4 cut(s) 150, 271, 304, 1583
MboI GATC 4 cut(s) 148, 269, 302, 1581
MfeI CAATTG 1 cut(s) 383
MhlI GDGCHC 4 cut(s) 751, 834, 1304, 1542
MlsI TGGCCA 1 cut(s) 537
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 3 cut(s) 887, 1068, 1493
MmeI TCCRAC 3 cut(s) 300, 848, 1467
Mox20I TGGCCA 1 cut(s) 537
MscI TGGCCA 1 cut(s) 537
MseI TTAA 3 cut(s) 24, 962, 1281
MslI CAYNNNNRTG 5 cut(s) 228, 456, 789, 971, 1342
Msp20I TGGCCA 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 4 cut(s) 206, 729, 1061, 1141
MspR9I CCNGG 2 cut(s) 730, 1374
MssI GTTTAAAC 1 cut(s) 963
MunI CAATTG 1 cut(s) 383
Mva1269I GAATGC 2 cut(s) 46, 587
MvaI CCWGG 1 cut(s) 1374
MwoI GCNNNNNNNGC 5 cut(s) 305, 591, 600, 699, 1270
NciI CCSGG 1 cut(s) 730
NcoI CCATGG 2 cut(s) 538, 1026
NdeI CATATG 1 cut(s) 1341
NdeII GATC 4 cut(s) 148, 269, 302, 1581
NheI GCTAGC 1 cut(s) 1333
NlaIV GGNNCC 3 cut(s) 800, 831, 1562
NmeAIII GCCGAG 1 cut(s) 1381
NspI RCATGY 2 cut(s) 513, 1060
OliI CACNNNNGTG 1 cut(s) 1342
PagI TCATGA 2 cut(s) 784, 1252
PciI ACATGT 1 cut(s) 509
PctI GAATGC 2 cut(s) 46, 587
PfeI GAWTC 8 cut(s) 19, 179, 218, 251, 284, 643, 1177, 1490
PflFI GACNNNGTC 1 cut(s) 1237
PflMI CCANNNNNTGG 1 cut(s) 1127
PkrI GCNGC 3 cut(s) 521, 678, 981
PleI GAGTC 3 cut(s) 887, 1068, 1492
PmeI GTTTAAAC 1 cut(s) 963
PpsI GAGTC 3 cut(s) 887, 1068, 1492
PpuMI RGGWCCY 2 cut(s) 798, 1560
PscI ACATGT 1 cut(s) 509
PshAI GACNNNNGTC 1 cut(s) 864
Psp5II RGGWCCY 2 cut(s) 798, 1560
Psp6I CCWGG 1 cut(s) 1372
PspEI GGTNACC 1 cut(s) 1526
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 1 cut(s) 1372
PspN4I GGNNCC 3 cut(s) 800, 831, 1562
PspPI GGNCC 2 cut(s) 798, 1560
PspPPI RGGWCCY 2 cut(s) 798, 1560
PsyI GACNNNGTC 1 cut(s) 1237
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
RseI CAYNNNNRTG 5 cut(s) 228, 456, 789, 971, 1342
SaqAI TTAA 3 cut(s) 24, 962, 1281
SatI GCNGC 3 cut(s) 520, 677, 980
Sau3AI GATC 4 cut(s) 148, 269, 302, 1581
Sau96I GGNCC 2 cut(s) 798, 1560
SchI GAGTC 3 cut(s) 887, 1068, 1493
ScrFI CCNGG 2 cut(s) 730, 1374
SduI GDGCHC 4 cut(s) 751, 834, 1304, 1542
SexAI ACCWGGT 1 cut(s) 1372
SfaNI GCATC 4 cut(s) 286, 583, 688, 1251
SinI GGWCC 2 cut(s) 798, 1560
SmiMI CAYNNNNRTG 5 cut(s) 228, 456, 789, 971, 1342
SmlI CTYRAG 1 cut(s) 1541
SmoI CTYRAG 1 cut(s) 1541
SspMI CTAG 7 cut(s) 33, 146, 890, 1068, 1224, 1334, 1407
StyD4I CCNGG 2 cut(s) 728, 1372
StyI CCWWGG 3 cut(s) 538, 1026, 1223
TaaI ACNGT 3 cut(s) 132, 776, 1099
TaiI ACGT 1 cut(s) 1364
TaqI TCGA 7 cut(s) 171, 301, 448, 1002, 1311, 1566, 1576
TfiI GAWTC 8 cut(s) 19, 179, 218, 251, 284, 643, 1177, 1490
Tru1I TTAA 3 cut(s) 24, 962, 1281
Tru9I TTAA 3 cut(s) 24, 962, 1281
TscAI CASTG 2 cut(s) 105, 135
TseI GCWGC 3 cut(s) 519, 676, 979
TspGWI ACGGA 2 cut(s) 578, 1521
TspRI CASTG 2 cut(s) 105, 135
Tth111I GACNNNGTC 1 cut(s) 1237
Van91I CCANNNNNTGG 1 cut(s) 1127
VpaK11BI GGWCC 2 cut(s) 798, 1560
XapI RAATTY 5 cut(s) 59, 344, 721, 1463, 1588
XbaI TCTAGA 1 cut(s) 889
XceI RCATGY 2 cut(s) 513, 1060
XmaJI CCTAGG 1 cut(s) 1223
XspI CTAG 7 cut(s) 33, 146, 890, 1068, 1224, 1334, 1407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.