Rorug02G0110900

DA1-related 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004156
Physical Location & Seq
Forward (+)
9502705 .. 9505770
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0110900.1

Sequence Viewer

Length: 987 bp
ATGGATTCCTGTGACCCCCATTTTCTGAGATCTCTCCTAGTCTTCAAGAACACCATCAACCAAGAGTTGATTAGGAGCTTGCATGTGTATGGATTAGAGGATGGGAAGGAAAATGAGGTTGAGAGGGAGTTTCTGTTCTCAGGAAACGGGTCATATGTGGAGTTTCGGGCTTACCCGGTTCTTAGATTGATGATATTCCGGGTTTCACAAGTGCTTGAAGGCTATGTTAATGGCTGCTGGGTCTGCATTTTAGCTTTTCATGCCAATCGTTCTCCTAATTTCACATGCACTCCTTCTATACTCTCTGTTTCAAGAAATCCTCAGTTAAAGTTGATCCCAAATTTAGCTAATGATCTTCAAATGGTTGTCGAGACAACCTGCATAAAAGCTGAGAATTTGCAGAAGTCAGATGAGGAAACAAGCCAAGGGAATGATGAGAATCACTGTCAACTAAGAAGAAGTTTGCCTATGCTTGATCTGGATCTTAATCGTCCTCCTTGTCCTGCCACAATGTCTGAATCATCTGATGATCAAGAAAGTGGAAGACAATCACCCGGTTTGATAGAGAAGAAGAATAGAAGAGCAGCAAGTGACCGCATAGCAAAGATCACTTTACCAGATCTGGTGAAGTATTTTGATATCCCTATTGTGGAAGCTTCAAGAAGTCTGAATGTTGGACTTACAGTACTGAAAAAGAAATGTAGAGAGTTTGGTATTCCTCGTTGGCCACATAGGAAGATAAAATCGCTTGACAGCCTCATTCGTGATCTTCAGGAAGAGACGGAGTTCCAACAGAAGGAGAACAAGGCTGCAGCCTTAGCAGTTGCGAAGAGGCAAAGGATGTTGGAGAGTGAAAAAGAAAGCATAGAGAGGAGACCCTTCTTGGATATGAAGATCGAGACCAAGAGGTTCAGGCAAGATGTTTTCAAGAGAAGGCATAGAGCCAGAGTTCTTAGAAGCCAGGGCCTATCACTCTCTGGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like LIM

Protein Analysis

328

Amino Acids

37.76

Weight (kDa)

9.06

Isoelectric Point (pI)

63.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 202 - 250 4.3e-22 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 386
AciI CCGC 1 cut(s) 595
AclWI GGATC 2 cut(s) 328, 489
AcoI YGGCCR 1 cut(s) 725
AcsI RAATTY 2 cut(s) 340, 394
AcuI CTGAAG 1 cut(s) 755
AfaI GTAC 1 cut(s) 687
AfiI CCNNNNNNNGG 2 cut(s) 649, 796
AgsI TTSAA 6 cut(s) 46, 218, 312, 359, 660, 928
AjnI CCWGG 1 cut(s) 960
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 5 cut(s) 78, 254, 347, 389, 656
AluI AGCT 5 cut(s) 78, 254, 347, 389, 656
Alw26I GTCTC 4 cut(s) 365, 773, 868, 893
AlwI GGATC 2 cut(s) 328, 489
AoxI GGCC 2 cut(s) 725, 964
ApeKI GCWGC 4 cut(s) 234, 584, 809, 812
ApoI RAATTY 2 cut(s) 340, 394
AspS9I GGNCC 1 cut(s) 964
AsuC2I CCSGG 3 cut(s) 176, 200, 555
AsuHPI GGTGA 2 cut(s) 543, 637
BalI TGGCCA 1 cut(s) 727
BbsI GAAGAC 2 cut(s) 34, 550
BbvI GCAGC 4 cut(s) 221, 596, 796, 824
BccI CCATC 2 cut(s) 62, 95
BciT130I CCWGG 1 cut(s) 962
BclI TGATCA 1 cut(s) 529
BcnI CCSGG 3 cut(s) 176, 200, 555
BcoDI GTCTC 4 cut(s) 365, 773, 868, 893
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 810
BfuAI ACCTGC 1 cut(s) 386
BglII AGATCT 2 cut(s) 29, 619
BisI GCNGC 4 cut(s) 235, 585, 810, 813
BlsI GCNGC 4 cut(s) 236, 586, 811, 814
BmcAI AGTACT 1 cut(s) 687
Bme1390I CCNGG 4 cut(s) 176, 200, 555, 962
BmgT120I GGNCC 1 cut(s) 964
BmrFI CCNGG 4 cut(s) 176, 200, 555, 962
BpiI GAAGAC 2 cut(s) 34, 550
Bpu10I CCTNAGC 1 cut(s) 817
BpuMI CCSGG 3 cut(s) 176, 200, 555
BsaBI GATNNNNATC 3 cut(s) 438, 480, 486
BsaI GGTCTC 2 cut(s) 868, 893
BsaJI CCNNGG 2 cut(s) 424, 961
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 274, 304
Bsc4I CCNNNNNNNGG 2 cut(s) 649, 796
Bse8I GATNNNNATC 3 cut(s) 438, 480, 486
BseBI CCWGG 1 cut(s) 962
BseDI CCNNGG 2 cut(s) 424, 961
BseGI GGATG 2 cut(s) 106, 846
BseJI GATNNNNATC 3 cut(s) 438, 480, 486
BseLI CCNNNNNNNGG 2 cut(s) 649, 796
BseMII CTCAG 4 cut(s) 17, 153, 335, 381
BseRI GAGGAG 1 cut(s) 886
BseXI GCAGC 4 cut(s) 221, 596, 796, 824
BseYI CCCAGC 1 cut(s) 237
BshFI GGCC 2 cut(s) 727, 966
BsiSI CCGG 3 cut(s) 176, 199, 555
BslI CCNNNNNNNGG 2 cut(s) 649, 796
BsmAI GTCTC 4 cut(s) 365, 773, 868, 893
BsmBI CGTCTC 1 cut(s) 773
BsnI GGCC 2 cut(s) 727, 966
Bso31I GGTCTC 2 cut(s) 868, 893
BspACI CCGC 1 cut(s) 595
BspANI GGCC 2 cut(s) 727, 966
BspCNI CTCAG 4 cut(s) 18, 152, 334, 382
BspMAI CTGCAG 1 cut(s) 814
BspMI ACCTGC 1 cut(s) 386
BspPI GGATC 2 cut(s) 328, 489
BspQI GCTCTTC 1 cut(s) 574
BspTNI GGTCTC 2 cut(s) 868, 893
BssECI CCNNGG 2 cut(s) 424, 961
BssT1I CCWWGG 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 962
Bst4CI ACNGT 2 cut(s) 446, 685
Bst6I CTCTTC 3 cut(s) 574, 771, 824
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 8 cut(s) 26, 139, 182, 321, 390, 452, 817, 953
BstF5I GGATG 2 cut(s) 106, 846
BstMAI GTCTC 4 cut(s) 365, 773, 868, 893
BstMWI GCNNNNNNNGC 3 cut(s) 243, 260, 818
BstNI CCWGG 1 cut(s) 962
BstNSI RCATGY 2 cut(s) 86, 288
BstSCI CCNGG 4 cut(s) 174, 198, 553, 960
BstSFI CTRYAG 1 cut(s) 810
BstV1I GCAGC 4 cut(s) 221, 596, 796, 824
BstV2I GAAGAC 2 cut(s) 34, 550
BstX2I RGATCY 3 cut(s) 29, 481, 619
BstYI RGATCY 3 cut(s) 29, 481, 619
BsuRI GGCC 2 cut(s) 727, 966
BtsCI GGATG 2 cut(s) 106, 846
BtsIMutI CAGTG 1 cut(s) 442
BveI ACCTGC 1 cut(s) 386
Cac8I GCNNGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 964
Csp6I GTAC 1 cut(s) 686
CviAII CATG 3 cut(s) 83, 260, 285
CviQI GTAC 1 cut(s) 686
DdeI CTNAG 8 cut(s) 26, 139, 182, 321, 390, 452, 817, 953
EaeI YGGCCR 1 cut(s) 725
Eam1104I CTCTTC 3 cut(s) 574, 771, 824
EarI CTCTTC 3 cut(s) 574, 771, 824
Eco130I CCWWGG 1 cut(s) 424
Eco31I GGTCTC 2 cut(s) 868, 893
Eco32I GATATC 1 cut(s) 640
Eco57I CTGAAG 1 cut(s) 755
EcoO109I RGGNCCY 1 cut(s) 964
EcoRII CCWGG 1 cut(s) 960
EcoRV GATATC 1 cut(s) 640
EcoT14I CCWWGG 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 424
Esp3I CGTCTC 1 cut(s) 773
FaeI CATG 3 cut(s) 86, 263, 288
FatI CATG 3 cut(s) 82, 259, 284
FauNDI CATATG 1 cut(s) 154
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 4 cut(s) 235, 585, 810, 813
FokI GGATG 2 cut(s) 113, 853
Fsp4HI GCNGC 4 cut(s) 235, 585, 810, 813
FspBI CTAG 1 cut(s) 38
GluI GCNGC 4 cut(s) 235, 585, 810, 813
GsaI CCCAGC 1 cut(s) 241
HaeIII GGCC 2 cut(s) 727, 966
HapII CCGG 3 cut(s) 176, 199, 555
Hin1II CATG 3 cut(s) 86, 263, 288
HincII GTYRAC 1 cut(s) 449
HindII GTYRAC 1 cut(s) 449
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 3 cut(s) 5, 439, 518
HpaII CCGG 3 cut(s) 176, 199, 555
HphI GGTGA 2 cut(s) 543, 637
Hpy166II GTNNAC 1 cut(s) 449
Hpy188I TCNGA 5 cut(s) 27, 409, 517, 526, 669
Hpy8I GTNNAC 1 cut(s) 449
HpyAV CCTTC 6 cut(s) 100, 212, 303, 790, 889, 927
HpyCH4III ACNGT 2 cut(s) 446, 685
HpyCH4V TGCA 6 cut(s) 82, 246, 288, 381, 400, 812
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 260, 818
HpyF3I CTNAG 8 cut(s) 26, 139, 182, 321, 390, 452, 817, 953
Hsp92II CATG 3 cut(s) 86, 263, 288
Ksp22I TGATCA 1 cut(s) 529
LguI GCTCTTC 1 cut(s) 574
LmnI GCTCC 1 cut(s) 75
Lsp1109I GCAGC 4 cut(s) 221, 596, 796, 824
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 2 cut(s) 11, 590
MflI RGATCY 3 cut(s) 29, 481, 619
MlsI TGGCCA 1 cut(s) 727
MluCI AATT 4 cut(s) 277, 340, 394, 982
MluNI TGGCCA 1 cut(s) 727
MmeI TCCRAC 3 cut(s) 655, 814, 825
Mox20I TGGCCA 1 cut(s) 727
MscI TGGCCA 1 cut(s) 727
MseI TTAA 4 cut(s) 228, 326, 486, 985
MslI CAYNNNNRTG 1 cut(s) 87
Msp20I TGGCCA 1 cut(s) 727
MspI CCGG 3 cut(s) 176, 199, 555
MspR9I CCNGG 4 cut(s) 176, 200, 555, 962
MvaI CCWGG 1 cut(s) 962
MwoI GCNNNNNNNGC 3 cut(s) 243, 260, 818
NciI CCSGG 3 cut(s) 176, 200, 555
NdeI CATATG 1 cut(s) 154
NlaIII CATG 3 cut(s) 86, 263, 288
NmuCI GTSAC 2 cut(s) 11, 590
NspI RCATGY 2 cut(s) 86, 288
PciSI GCTCTTC 1 cut(s) 574
PfeI GAWTC 3 cut(s) 5, 439, 518
PkrI GCNGC 4 cut(s) 236, 586, 811, 814
Psp6I CCWGG 1 cut(s) 960
PspFI CCCAGC 1 cut(s) 237
PspGI CCWGG 1 cut(s) 960
PspPI GGNCC 1 cut(s) 964
PstI CTGCAG 1 cut(s) 814
PsuI RGATCY 3 cut(s) 29, 481, 619
RsaI GTAC 1 cut(s) 687
RsaNI GTAC 1 cut(s) 686
RseI CAYNNNNRTG 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 574
SaqAI TTAA 4 cut(s) 228, 326, 486, 985
SatI GCNGC 4 cut(s) 235, 585, 810, 813
Sau96I GGNCC 1 cut(s) 964
ScaI AGTACT 1 cut(s) 687
ScrFI CCNGG 4 cut(s) 176, 200, 555, 962
SetI ASST 8 cut(s) 80, 120, 256, 349, 380, 391, 658, 911
SfcI CTRYAG 1 cut(s) 810
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 4 cut(s) 277, 340, 394, 982
SsiI CCGC 1 cut(s) 595
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 4 cut(s) 174, 198, 553, 960
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 2 cut(s) 446, 685
TaqI TCGA 2 cut(s) 369, 897
TasI AATT 4 cut(s) 277, 340, 394, 982
TatI WGTACW 1 cut(s) 685
TfiI GAWTC 3 cut(s) 5, 439, 518
Tru1I TTAA 4 cut(s) 228, 326, 486, 985
Tru9I TTAA 4 cut(s) 228, 326, 486, 985
TscAI CASTG 1 cut(s) 449
TseFI GTSAC 2 cut(s) 11, 590
TseI GCWGC 4 cut(s) 234, 584, 809, 812
Tsp45I GTSAC 2 cut(s) 11, 590
TspDTI ATGAA 2 cut(s) 248, 905
TspGWI ACGGA 1 cut(s) 797
TspRI CASTG 1 cut(s) 449
XapI RAATTY 2 cut(s) 340, 394
XceI RCATGY 2 cut(s) 86, 288
XspI CTAG 1 cut(s) 38
ZrmI AGTACT 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.