Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004156

Physical Location & Seq

Genomic Coordinates Forward (+)

16008373 .. 16014343

Gene Structure 5971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G147100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1587 bp

ATGGGTTGGCTGACTAAGATTCTCAAAGGTTCTAGCTATAAAGGGCACTCTCATCGGAAATATGGGCATGATAGAACGTGGGACGAACCTCGTGATTCAGTGGAAGAGGATGTAGATATTGCTATTGCATTGTCCCTTTCAGAACTAGATCAAAAAGGAAAAGGCGTAATCGAAGATGAATCTGAATCAGAGGATGATGAACAATCTGCTAAATTTGAATCAGACAGTGATGAACAACCTACCAAAGTTCAGTCAGACGATGATGAGAAACCTGCCAAAGTTCAATCAGACGATGATGAAAAACCTGCCAACTTTCAATATGAGGAAGATGAACAAAGTGCTAAAGTTCAATTGGAGGAAGATGAACAACTTGCAAAGGCTCTTCAAGAAAGTTTGAACATGGGTTCTCCTCCTCGATATGATAATGGCAGTATATTTCAACCTTTTCCATTCTTCATGCCAGCTGGGTACAGTAGGATATGTGCTGGCTGCAAGTTGGAGATCGGCCATGGGCGATATTTGAGTTGCATGGGTACTGTTTGGCATCCAGAATGTTTTCGTTGCCGTGCTTGCAATCTTCCAATTACTGATTATGAGTATTCTATGTCTGGAAATCACCCTTACCACAAATCCTGCTATAAGGAGCAGCATCACCCAAGATGTGATGTTTGTAAGAATTTTATCCCAACAAATTCAAATGGTCTTATTGAGTATAGGGCACATCCTTTCTGGCTACAAAAGTACTGCCCCTCTCATGAACGTGATAGGACTCCTCGGTGTTGTAGCTGTGAAAGAATGGAGCCAAGGGACGCAAGATATTTGTTACTTGATGATGGTCGGAAGCTATGTCTGGAATGTCTAGACTCAGCAATTATGGATACACACGAATGCCAACCCCTTTATCTTGAAATTCAAGATTTTTACGAAGGTTTAAACATGAAAGTGAAGCAGCAAGTACCAATGCTCTTGGTTGAGAGACAAGCTCTAAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCATCACATGCCAGAGACTAGAGGACTCTGCTTGTCAGAAGAACAGACTGTTACCACTATTTTACGGAGACCAAAGATCGGAGCTGGCTACCGGATGATAGACATGGTAACTGAGCCTCATAGGCTGATTCGCCGCTGTGAAGTAACAGCAATTCTCGTATTGTATGGCCTTCCTAGGTTGTTGACAGGGTCGATTCTGGCTCATGAGATGATGCATGCATGGCTAAGGCTCAACGGCTATCCGAACCTGAGCCCGGAGGTTGAAGAAGGTATCTGTCAAGTGTTGGCCCATATGTGGCTAGACGCTGAGATGTATTCTACATCCGGTAGTGATGTTGCCTCATCATCTACGTCTTCCTCCTCATCCTCTTCTAGTTCGGCATCATCTAAGAAGGGTAAACGGTCTGACTTTGAGAAGAAGCTTGGTGATTTTTTCAAACACCAAATTGAGTCGGATTCATCAACAGCATATGGAGAAGGATTCAGGATAGGAAATAAAGCAGTGCTCAAGTATGGTCTAAGGAGGACCCTTGATCATATTCGAATGACTGGAAGCTTTCCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

529

Amino Acids

60.14

Weight (kDa)

5.45

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36860 AT4G36860 AT4G36860
fragaria_vesca	FvH4_1g14251 FvH4_1g14310 FvH4_1g14310 FvH4_1g14310 FvH4_1g14310 FvH4_1g14310
malus_domestica	MD02G1156700.v1.1 MD10G1020400.v1.1 MD15G1271000.v1.1
prunus_persica	Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1 Prupe.7G147100_v2.0.a1
pyrus_communis	pycom02g12360 pycom10g01270 pycom15g23490
rosa_chinensis	RchiOBHm_Chr2g0102971
rosa_multiflora	Rmu_sc0000388.1_g000036
rosa_roxburghii	Rroxscaffold_2G00140050
rosa_rugosa	Rorug02G0110800 Rorug02G0110900 Rorug02G0111000 Rorug02G0111000
rosa_samantha	Rh2AG159200 Rh2BG165700 Rh2CG165700 Rh2DG164500
rosa_wichuraiana	Rw2G012440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	280, 313
AciI	CCGC	1 cut(s)	1153
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	4 cut(s)	212, 676, 691, 909
AfaI	GTAC	4 cut(s)	470, 535, 743, 957
AfiI	CCNNNNNNNGG	3 cut(s)	1097, 1273, 1314
AluBI	AGCT	8 cut(s)	36, 464, 786, 844, 983, 1103, 1441, 1575
AluI	AGCT	8 cut(s)	36, 464, 786, 844, 983, 1103, 1441, 1575
Alw21I	GWGCWC	1 cut(s)	1527
Alw26I	GTCTC	3 cut(s)	970, 1028, 1081
AoxI	GGCC	4 cut(s)	505, 993, 1186, 1305
ApeKI	GCWGC	3 cut(s)	489, 646, 949
ApoI	RAATTY	4 cut(s)	212, 676, 691, 909
Asp700I	GAANNNNTTC	1 cut(s)	555
AspA2I	CCTAGG	1 cut(s)	1193
AspS9I	GGNCC	2 cut(s)	1306, 1545
AsuC2I	CCSGG	1 cut(s)	1274
AsuHPI	GGTGA	3 cut(s)	608, 644, 1457
AsuII	TTCGAA	1 cut(s)	1561
AvaII	GGWCC	1 cut(s)	1545
AvrII	CCTAGG	1 cut(s)	1193
BaeGI	GKGCMC	2 cut(s)	48, 721
BanII	GRGCYC	1 cut(s)	1274
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	1365
Bbv12I	GWGCWC	1 cut(s)	1527
BbvI	GCAGC	3 cut(s)	476, 658, 961
BccI	CCATC	1 cut(s)	827
BceAI	ACGGC	2 cut(s)	549, 1270
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciVI	GTATCC	1 cut(s)	871
BclI	TGATCA	1 cut(s)	1552
BcnI	CCSGG	1 cut(s)	1274
BcoDI	GTCTC	3 cut(s)	970, 1028, 1081
BfaI	CTAG	7 cut(s)	33, 146, 860, 1038, 1194, 1319, 1392
BfuAI	ACCTGC	2 cut(s)	280, 313
BfuI	GTATCC	1 cut(s)	871
BglI	GCCNNNNNGGC	1 cut(s)	1141
BisI	GCNGC	4 cut(s)	490, 647, 950, 1153
BlnI	CCTAGG	1 cut(s)	1193
BlsI	GCNGC	4 cut(s)	491, 648, 951, 1154
BmcAI	AGTACT	1 cut(s)	743
Bme1390I	CCNGG	1 cut(s)	1274
Bme18I	GGWCC	1 cut(s)	1545
BmgT120I	GGNCC	2 cut(s)	1306, 1545
BmiI	GGNNCC	2 cut(s)	801, 1547
BmrFI	CCNGG	1 cut(s)	1274
BmsI	GCATC	4 cut(s)	553, 658, 1221, 1409
BpiI	GAAGAC	1 cut(s)	1365
BplI	GAGNNNNNCTC	2 cut(s)	967, 999
Bpu10I	CCTNAGC	2 cut(s)	1244, 1268
Bpu14I	TTCGAA	1 cut(s)	1561
BpuEI	CTTGAG	1 cut(s)	1511
BpuMI	CCSGG	1 cut(s)	1274
BsaI	GGTCTC	1 cut(s)	1081
BsaJI	CCNNGG	5 cut(s)	508, 773, 803, 996, 1193
BsaWI	WCCGGW	2 cut(s)	1110, 1343
Bsc4I	CCNNNNNNNGG	3 cut(s)	1097, 1273, 1314
Bse1I	ACTGG	2 cut(s)	1573, 1580
BseDI	CCNNGG	5 cut(s)	508, 773, 803, 996, 1193
BseGI	GGATG	7 cut(s)	115, 199, 544, 721, 1119, 1340, 1382
BseLI	CCNNNNNNNGG	3 cut(s)	1097, 1273, 1314
BseMII	CTCAG	4 cut(s)	879, 1122, 1259, 1317
BseNI	ACTGG	2 cut(s)	1573, 1580
BseRI	GAGGAG	4 cut(s)	399, 402, 762, 1369
BseSI	GKGCMC	2 cut(s)	48, 721
BseXI	GCAGC	3 cut(s)	476, 658, 961
BseYI	CCCAGC	1 cut(s)	464
BshFI	GGCC	4 cut(s)	507, 995, 1188, 1307
BsiHKAI	GWGCWC	1 cut(s)	1527
BsiSI	CCGG	3 cut(s)	1111, 1274, 1344
BslFI	GGGAC	3 cut(s)	95, 118, 821
BslI	CCNNNNNNNGG	3 cut(s)	1097, 1273, 1314
BsmAI	GTCTC	3 cut(s)	970, 1028, 1081
BsmFI	GGGAC	3 cut(s)	95, 118, 821
BsmI	GAATGC	1 cut(s)	893
BsnI	GGCC	4 cut(s)	507, 995, 1188, 1307
Bso31I	GGTCTC	1 cut(s)	1081
Bsp119I	TTCGAA	1 cut(s)	1561
Bsp1286I	GDGCHC	4 cut(s)	48, 721, 1274, 1527
Bsp143I	GATC	4 cut(s)	148, 501, 1095, 1552
Bsp19I	CCATGG	2 cut(s)	508, 996
BspACI	CCGC	1 cut(s)	1153
BspANI	GGCC	4 cut(s)	507, 995, 1188, 1307
BspCNI	CTCAG	4 cut(s)	878, 1123, 1260, 1318
BspHI	TCATGA	2 cut(s)	754, 1222
BspLI	GGNNCC	2 cut(s)	801, 1547
BspMI	ACCTGC	2 cut(s)	280, 313
BspQI	GCTCTTC	1 cut(s)	387
BspT104I	TTCGAA	1 cut(s)	1561
BspTNI	GGTCTC	1 cut(s)	1081
BsrI	ACTGG	2 cut(s)	1573, 1580
BssECI	CCNNGG	5 cut(s)	508, 773, 803, 996, 1193
BssMI	GATC	4 cut(s)	148, 501, 1095, 1552
BssSI	CACGAG	1 cut(s)	90
BssT1I	CCWWGG	4 cut(s)	508, 803, 996, 1193
Bst2BI	CACGAG	1 cut(s)	90
Bst4CI	ACNGT	5 cut(s)	227, 473, 538, 1069, 1422
Bst6I	CTCTTC	3 cut(s)	99, 387, 1393
BstBI	TTCGAA	1 cut(s)	1561
BstC8I	GCNNGC	5 cut(s)	462, 487, 571, 1105, 1236
BstDEI	CTNAG	8 cut(s)	15, 865, 1131, 1244, 1268, 1326, 1407, 1538
BstDSI	CCRYGG	2 cut(s)	508, 996
BstF5I	GGATG	7 cut(s)	115, 199, 544, 721, 1119, 1340, 1382
BstKTI	GATC	4 cut(s)	151, 504, 1098, 1555
BstMAI	GTCTC	3 cut(s)	970, 1028, 1081
BstMBI	GATC	4 cut(s)	148, 501, 1095, 1552
BstMWI	GCNNNNNNNGC	3 cut(s)	570, 1141, 1240
BstNSI	RCATGY	2 cut(s)	1030, 1238
BstSCI	CCNGG	1 cut(s)	1272
BstSLI	GKGCMC	2 cut(s)	48, 721
BstV1I	GCAGC	3 cut(s)	476, 658, 961
BstV2I	GAAGAC	1 cut(s)	1365
BsuI	GTATCC	1 cut(s)	871
BsuRI	GGCC	4 cut(s)	507, 995, 1188, 1307
BtgI	CCRYGG	2 cut(s)	508, 996
BtsCI	GGATG	7 cut(s)	115, 199, 544, 721, 1119, 1340, 1382
BtsI	GCAGTG	1 cut(s)	1527
BtsIMutI	CAGTG	3 cut(s)	105, 232, 1527
BveI	ACCTGC	2 cut(s)	280, 313
Cac8I	GCNNGC	5 cut(s)	462, 487, 571, 1105, 1236
CciI	TCATGA	2 cut(s)	754, 1222
Cfr13I	GGNCC	2 cut(s)	1306, 1545
CseI	GACGC	2 cut(s)	818, 1331
Csp6I	GTAC	4 cut(s)	469, 534, 742, 956
CviQI	GTAC	4 cut(s)	469, 534, 742, 956
DdeI	CTNAG	8 cut(s)	15, 865, 1131, 1244, 1268, 1326, 1407, 1538
DpnI	GATC	4 cut(s)	150, 503, 1097, 1554
DpnII	GATC	4 cut(s)	148, 501, 1095, 1552
DraI	TTTAAA	1 cut(s)	933
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	3 cut(s)	99, 387, 1393
EarI	CTCTTC	3 cut(s)	99, 387, 1393
Eco130I	CCWWGG	4 cut(s)	508, 803, 996, 1193
Eco24I	GRGCYC	1 cut(s)	1274
Eco31I	GGTCTC	1 cut(s)	1081
Eco47I	GGWCC	1 cut(s)	1545
EcoO109I	RGGNCCY	1 cut(s)	1545
EcoT14I	CCWWGG	4 cut(s)	508, 803, 996, 1193
EcoT22I	ATGCAT	2 cut(s)	1236, 1240
EcoT38I	GRGCYC	1 cut(s)	1274
ErhI	CCWWGG	4 cut(s)	508, 803, 996, 1193
FaqI	GGGAC	3 cut(s)	95, 118, 821
FauNDI	CATATG	2 cut(s)	1311, 1489
FbaI	TGATCA	1 cut(s)	1552
Fnu4HI	GCNGC	4 cut(s)	490, 647, 950, 1153
FokI	GGATG	7 cut(s)	122, 206, 531, 708, 1126, 1327, 1369
FriOI	GRGCYC	1 cut(s)	1274
Fsp4HI	GCNGC	4 cut(s)	490, 647, 950, 1153
FspBI	CTAG	7 cut(s)	33, 146, 860, 1038, 1194, 1319, 1392
GluI	GCNGC	4 cut(s)	490, 647, 950, 1153
GsaI	CCCAGC	1 cut(s)	468
HaeIII	GGCC	4 cut(s)	507, 995, 1188, 1307
HapII	CCGG	3 cut(s)	1111, 1274, 1344
HgaI	GACGC	2 cut(s)	818, 1331
HincII	GTYRAC	1 cut(s)	1203
HindII	GTYRAC	1 cut(s)	1203
HindIII	AAGCTT	2 cut(s)	1439, 1573
HpaII	CCGG	3 cut(s)	1111, 1274, 1344
HphI	GGTGA	3 cut(s)	608, 644, 1457
Hpy166II	GTNNAC	2 cut(s)	1203, 1418
Hpy8I	GTNNAC	2 cut(s)	1203, 1418
HpyAV	CCTTC	5 cut(s)	920, 1199, 1280, 1405, 1490
HpyCH4III	ACNGT	5 cut(s)	227, 473, 538, 1069, 1422
HpyCH4IV	ACGT	3 cut(s)	77, 760, 1370
HpyCH4V	TGCA	7 cut(s)	128, 374, 492, 528, 573, 1234, 1238
HpyF10VI	GCNNNNNNNGC	3 cut(s)	570, 1141, 1240
HpyF3I	CTNAG	8 cut(s)	15, 865, 1131, 1244, 1268, 1326, 1407, 1538
HpySE526I	ACGT	3 cut(s)	77, 760, 1370
Ksp22I	TGATCA	1 cut(s)	1552
Kzo9I	GATC	4 cut(s)	148, 501, 1095, 1552
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	3 cut(s)	643, 799, 1100
Lsp1109I	GCAGC	3 cut(s)	476, 658, 961
LweI	GCATC	4 cut(s)	553, 658, 1221, 1409
MaeI	CTAG	7 cut(s)	33, 146, 860, 1038, 1194, 1319, 1392
MaeII	ACGT	3 cut(s)	77, 760, 1370
MaeIII	GTNAC	4 cut(s)	822, 1069, 1126, 1162
MalI	GATC	4 cut(s)	150, 503, 1097, 1554
MboI	GATC	4 cut(s)	148, 501, 1095, 1552
MfeI	CAATTG	1 cut(s)	350
MhlI	GDGCHC	4 cut(s)	48, 721, 1274, 1527
MluCI	AATT	9 cut(s)	212, 350, 582, 676, 691, 870, 909, 1170, 1464
MlyI	GAGTC	4 cut(s)	763, 857, 1038, 1478
MmeI	TCCRAC	3 cut(s)	477, 818, 1452
Mph1103I	ATGCAT	2 cut(s)	1236, 1240
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	1 cut(s)	932
MslI	CAYNNNNRTG	3 cut(s)	759, 886, 941
MspA1I	CMGCKG	2 cut(s)	464, 1155
MspI	CCGG	3 cut(s)	1111, 1274, 1344
MspR9I	CCNGG	1 cut(s)	1274
MssI	GTTTAAAC	1 cut(s)	933
MunI	CAATTG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	893
MwoI	GCNNNNNNNGC	3 cut(s)	570, 1141, 1240
NciI	CCSGG	1 cut(s)	1274
NcoI	CCATGG	2 cut(s)	508, 996
NdeI	CATATG	2 cut(s)	1311, 1489
NdeII	GATC	4 cut(s)	148, 501, 1095, 1552
NlaIV	GGNNCC	2 cut(s)	801, 1547
NsiI	ATGCAT	2 cut(s)	1236, 1240
NspI	RCATGY	2 cut(s)	1030, 1238
NspV	TTCGAA	1 cut(s)	1561
PaeI	GCATGC	1 cut(s)	1238
PagI	TCATGA	2 cut(s)	754, 1222
PciSI	GCTCTTC	1 cut(s)	387
PctI	GAATGC	1 cut(s)	893
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	9 cut(s)	19, 95, 179, 185, 218, 1147, 1213, 1475, 1500
PflFI	GACNNNGTC	1 cut(s)	1207
PkrI	GCNGC	4 cut(s)	491, 648, 951, 1154
PleI	GAGTC	4 cut(s)	763, 857, 1038, 1477
PmeI	GTTTAAAC	1 cut(s)	933
PpsI	GAGTC	4 cut(s)	763, 857, 1038, 1477
PpuMI	RGGWCCY	1 cut(s)	1545
Psp5II	RGGWCCY	1 cut(s)	1545
PspFI	CCCAGC	1 cut(s)	464
PspN4I	GGNNCC	2 cut(s)	801, 1547
PspPI	GGNCC	2 cut(s)	1306, 1545
PspPPI	RGGWCCY	1 cut(s)	1545
PsyI	GACNNNGTC	1 cut(s)	1207
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	4 cut(s)	470, 535, 743, 957
RsaNI	GTAC	4 cut(s)	469, 534, 742, 956
RseI	CAYNNNNRTG	3 cut(s)	759, 886, 941
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	932
SatI	GCNGC	4 cut(s)	490, 647, 950, 1153
Sau3AI	GATC	4 cut(s)	148, 501, 1095, 1552
Sau96I	GGNCC	2 cut(s)	1306, 1545
ScaI	AGTACT	1 cut(s)	743
SchI	GAGTC	4 cut(s)	763, 857, 1038, 1478
ScrFI	CCNGG	1 cut(s)	1274
SduI	GDGCHC	4 cut(s)	48, 721, 1274, 1527
SfaNI	GCATC	4 cut(s)	553, 658, 1221, 1409
SfuI	TTCGAA	1 cut(s)	1561
SinI	GGWCC	1 cut(s)	1545
SmiMI	CAYNNNNRTG	3 cut(s)	759, 886, 941
SmlI	CTYRAG	1 cut(s)	1526
SmoI	CTYRAG	1 cut(s)	1526
SphI	GCATGC	1 cut(s)	1238
Sse9I	AATT	9 cut(s)	212, 350, 582, 676, 691, 870, 909, 1170, 1464
SsiI	CCGC	1 cut(s)	1153
SspMI	CTAG	7 cut(s)	33, 146, 860, 1038, 1194, 1319, 1392
StyD4I	CCNGG	1 cut(s)	1272
StyI	CCWWGG	4 cut(s)	508, 803, 996, 1193
TaaI	ACNGT	5 cut(s)	227, 473, 538, 1069, 1422
TaiI	ACGT	3 cut(s)	80, 763, 1373
TaqI	TCGA	4 cut(s)	171, 415, 1211, 1561
TasI	AATT	9 cut(s)	212, 350, 582, 676, 691, 870, 909, 1170, 1464
TatI	WGTACW	1 cut(s)	741
TauI	GCSGC	1 cut(s)	1155
TfiI	GAWTC	9 cut(s)	19, 95, 179, 185, 218, 1147, 1213, 1475, 1500
Tru1I	TTAA	1 cut(s)	932
Tru9I	TTAA	1 cut(s)	932
TscAI	CASTG	3 cut(s)	105, 232, 1527
TseI	GCWGC	3 cut(s)	489, 646, 949
TspGWI	ACGGA	1 cut(s)	1099
TspRI	CASTG	3 cut(s)	105, 232, 1527
Tth111I	GACNNNGTC	1 cut(s)	1207
VpaK11BI	GGWCC	1 cut(s)	1545
XapI	RAATTY	4 cut(s)	212, 676, 691, 909
XbaI	TCTAGA	1 cut(s)	859
XceI	RCATGY	2 cut(s)	1030, 1238
XmaJI	CCTAGG	1 cut(s)	1193
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	7 cut(s)	33, 146, 860, 1038, 1194, 1319, 1392
ZrmI	AGTACT	1 cut(s)	743
Zsp2I	ATGCAT	2 cut(s)	1236, 1240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.