Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013192

Physical Location & Seq

Genomic Coordinates Forward (+)

17440177 .. 17442151

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGACGGCTGTGACGGCGGCGCAAAGATCAGTTCCGGCGCCGTTTTTAAGCAAAACGTATCAGCTAGTTGATGATCATAGCACAGACGACGTCGTTTCATGGAACGAAGAAGGAACAGCTTTTGTCGTGTGGAAAACAGCAGAGTTTGCTAAAGATCTTCTTCCTCAATACTTCAAGCATAATAATTTCTCAAGCTTCATTCGTCAGCTCAACACTTACGGATTTCGTAAAACTGTACCGGATAAATGGGAATTTGCAAACGATTATTTCCGGAGAGGCGGGGAGGATCTGTTGACGGACATACGACGGCGTAAATCGGTGATTGCTTCAACGGCGGGGAAATGTGTTGTTGTTGGTTCGCCTTCTGAGTCTAATTCTGGTGGTGGTGATGATCACGGTTCAAGCTCCACGTCATCACCCGGTTCGTCGAAGAATCCTGGTTCGGTGGAGAACATGGTTGCTGATTTATCAGGAGAGAACGAGAAGCTTAAACGTGAAAACAATAACTTGAGCTCGGAGCTCGCGGCGGCGAAGAAGCAGCGCGATGAGCTAGTGACGTTCTTGACGGGTCATCTGAAAGTAAGACCGGAACAAATCGATAAAATGATCAAAGGAGGGAAATTTAAACCGGTGGAGTCTGACGAAGAGAGTGAGTGCGAAGGTTGCGACGGCGGCGGAGGAGCAGAGGAGGGGGTAGGTGAAGGATTGAAATTGTTTGGGGTGTGGTTGAAAGGAGAGAGAAAAAAGAGGGACCGGGATGAAAAGAATTATGTGGTGAGTGGGTCCCGTATGACGGAAATAAAGAACGTGGACTTTCACGCGCCGTTGTGGAAAAGCAGCAAAGTCTGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

284

Amino Acids

31.33

Weight (kDa)

6.27

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	15 - 104	9.3e-31	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36990
fragaria_vesca	FvH4_1g16030
malus_domestica	MD02G1171800.v1.1 MD15G1283700.v1.1
prunus_persica	Prupe.7G133600_v2.0.a1
pyrus_communis	pycom02g13850 pycom15g24670
rosa_chinensis	RchiOBHm_Chr2g0105601
rosa_laevigata	RLG00000017444
rosa_multiflora	Rmu_co8474487.1_g000001 Rmu_sc0001051.1_g000029
rosa_roxburghii	Rroxscaffold_2G00138040
rosa_rugosa	Rorug02G0129000
rosa_samantha	Rh2AG180500 Rh2BG189300 Rh2CG184700 Rh2DG186200
rosa_wichuraiana	Rw2G014110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	37
AccII	CGCG	3 cut(s)	524, 543, 821
AccIII	TCCGGA	1 cut(s)	270
AciI	CCGC	7 cut(s)	17, 279, 335, 524, 527, 672, 675
AclWI	GGATC	1 cut(s)	294
AcsI	RAATTY	2 cut(s)	251, 620
AcyI	GRCGYC	2 cut(s)	38, 90
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	793
AgeI	ACCGGT	1 cut(s)	628
AgsI	TTSAA	5 cut(s)	175, 330, 402, 709, 730
AjiI	CACGTC	1 cut(s)	411
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	9 cut(s)	64, 119, 195, 208, 405, 487, 513, 520, 550
AluI	AGCT	9 cut(s)	64, 119, 195, 208, 405, 487, 513, 520, 550
Alw21I	GWGCWC	2 cut(s)	515, 522
AlwI	GGATC	1 cut(s)	294
Aor13HI	TCCGGA	1 cut(s)	270
ApeKI	GCWGC	2 cut(s)	538, 837
ApoI	RAATTY	2 cut(s)	251, 620
AsiGI	ACCGGT	1 cut(s)	628
AspLEI	GCGC	4 cut(s)	22, 40, 543, 823
AspS9I	GGNCC	2 cut(s)	751, 783
AsuC2I	CCSGG	2 cut(s)	420, 755
AsuHPI	GGTGA	5 cut(s)	331, 398, 408, 710, 787
AvaII	GGWCC	2 cut(s)	751, 783
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	2 cut(s)	515, 522
Bbv12I	GWGCWC	2 cut(s)	515, 522
BbvI	GCAGC	2 cut(s)	550, 849
BceAI	ACGGC	7 cut(s)	21, 25, 30, 323, 348, 685, 808
BciT130I	CCWGG	1 cut(s)	438
BclI	TGATCA	3 cut(s)	73, 391, 606
BcnI	CCSGG	2 cut(s)	420, 755
BfaI	CTAG	2 cut(s)	65, 551
BfoI	RGCGCY	1 cut(s)	41
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	6 cut(s)	18, 525, 528, 539, 673, 838
BlsI	GCNGC	6 cut(s)	19, 526, 529, 540, 674, 839
Bme1390I	CCNGG	3 cut(s)	420, 438, 755
Bme18I	GGWCC	2 cut(s)	751, 783
BmgBI	CACGTC	1 cut(s)	411
BmgT120I	GGNCC	2 cut(s)	751, 783
BmiI	GGNNCC	4 cut(s)	39, 752, 784, 785
BmrFI	CCNGG	3 cut(s)	420, 438, 755
BpuEI	CTTGAG	2 cut(s)	175, 529
BpuMI	CCSGG	2 cut(s)	420, 755
Bsa29I	ATCGAT	1 cut(s)	597
BsaHI	GRCGYC	2 cut(s)	38, 90
BsaWI	WCCGGW	4 cut(s)	238, 270, 586, 628
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	793
Bse118I	RCCGGY	1 cut(s)	628
BseAI	TCCGGA	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	597
BseGI	GGATG	1 cut(s)	763
BseLI	CCNNNNNNNGG	1 cut(s)	793
BseMII	CTCAG	1 cut(s)	357
BseRI	GAGGAG	2 cut(s)	693, 701
BseXI	GCAGC	2 cut(s)	550, 849
Bsh1236I	CGCG	3 cut(s)	524, 543, 821
BshNI	GGYRCC	1 cut(s)	37
BshTI	ACCGGT	1 cut(s)	628
BshVI	ATCGAT	1 cut(s)	597
BsiHKAI	GWGCWC	2 cut(s)	515, 522
BsiSI	CCGG	7 cut(s)	35, 239, 271, 420, 587, 629, 754
BslFI	GGGAC	2 cut(s)	764, 769
BslI	CCNNNNNNNGG	1 cut(s)	793
BsmFI	GGGAC	2 cut(s)	764, 769
Bsp1286I	GDGCHC	2 cut(s)	515, 522
Bsp13I	TCCGGA	1 cut(s)	270
Bsp143I	GATC	6 cut(s)	26, 73, 154, 286, 391, 606
BspACI	CCGC	7 cut(s)	17, 279, 335, 524, 527, 672, 675
BspCNI	CTCAG	1 cut(s)	358
BspDI	ATCGAT	1 cut(s)	597
BspEI	TCCGGA	1 cut(s)	270
BspFNI	CGCG	3 cut(s)	524, 543, 821
BspLI	GGNNCC	4 cut(s)	39, 752, 784, 785
BspPI	GGATC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	628
BssMI	GATC	6 cut(s)	26, 73, 154, 286, 391, 606
BssNI	GRCGYC	2 cut(s)	38, 90
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	235, 398
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	2 cut(s)	38, 90
BstAPI	GCANNNNNTGC	2 cut(s)	146, 846
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	763
BstFNI	CGCG	3 cut(s)	524, 543, 821
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	4 cut(s)	22, 40, 543, 823
BstKTI	GATC	6 cut(s)	29, 76, 157, 289, 394, 609
BstMBI	GATC	6 cut(s)	26, 73, 154, 286, 391, 606
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 146, 332, 547, 663, 672, 846
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	3 cut(s)	418, 436, 753
BstUI	CGCG	3 cut(s)	524, 543, 821
BstV1I	GCAGC	2 cut(s)	550, 849
BstX2I	RGATCY	2 cut(s)	154, 286
BstYI	RGATCY	2 cut(s)	154, 286
Bsu15I	ATCGAT	1 cut(s)	597
BsuTUI	ATCGAT	1 cut(s)	597
BtgZI	GCGATG	1 cut(s)	558
BtrI	CACGTC	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	763
Cac8I	GCNNGC	1 cut(s)	522
CfoI	GCGC	4 cut(s)	22, 40, 543, 823
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	2 cut(s)	751, 783
ClaI	ATCGAT	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	236
CspAI	ACCGGT	1 cut(s)	628
CviAII	CATG	2 cut(s)	99, 454
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	1 cut(s)	366
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	6 cut(s)	28, 75, 156, 288, 393, 608
DpnII	GATC	6 cut(s)	26, 73, 154, 286, 391, 606
DraI	TTTAAA	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
EciI	GGCGGA	1 cut(s)	690
Ecl136II	GAGCTC	2 cut(s)	513, 520
Eco24I	GRGCYC	2 cut(s)	515, 522
Eco47I	GGWCC	2 cut(s)	751, 783
Eco53kI	GAGCTC	2 cut(s)	513, 520
EcoICRI	GAGCTC	2 cut(s)	513, 520
EcoO109I	RGGNCCY	1 cut(s)	783
EcoRII	CCWGG	1 cut(s)	436
EcoT38I	GRGCYC	2 cut(s)	515, 522
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
FaeI	CATG	2 cut(s)	102, 457
FaiI	YATR	7 cut(s)	78, 100, 180, 302, 455, 771, 791
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	2 cut(s)	764, 769
FatI	CATG	2 cut(s)	98, 453
FauI	CCCGC	2 cut(s)	272, 328
FbaI	TGATCA	3 cut(s)	73, 391, 606
Fnu4HI	GCNGC	6 cut(s)	18, 525, 528, 539, 673, 838
FokI	GGATG	1 cut(s)	770
FriOI	GRGCYC	2 cut(s)	515, 522
Fsp4HI	GCNGC	6 cut(s)	18, 525, 528, 539, 673, 838
FspBI	CTAG	2 cut(s)	65, 551
GlaI	GCGC	4 cut(s)	21, 39, 542, 822
GluI	GCNGC	6 cut(s)	18, 525, 528, 539, 673, 838
HaeII	RGCGCY	1 cut(s)	41
HapII	CCGG	7 cut(s)	35, 239, 271, 420, 587, 629, 754
HhaI	GCGC	4 cut(s)	22, 40, 543, 823
Hin1I	GRCGYC	2 cut(s)	38, 90
Hin1II	CATG	2 cut(s)	102, 457
Hin6I	GCGC	4 cut(s)	20, 38, 541, 821
HinP1I	GCGC	4 cut(s)	20, 38, 541, 821
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HindIII	AAGCTT	2 cut(s)	193, 485
HinfI	GANTC	3 cut(s)	368, 433, 635
HpaII	CCGG	7 cut(s)	35, 239, 271, 420, 587, 629, 754
HphI	GGTGA	5 cut(s)	331, 398, 408, 710, 787
Hpy166II	GTNNAC	2 cut(s)	294, 811
Hpy188I	TCNGA	4 cut(s)	367, 517, 576, 640
Hpy188III	TCNNGA	3 cut(s)	271, 471, 562
Hpy8I	GTNNAC	2 cut(s)	294, 811
Hpy99I	CGWCG	5 cut(s)	92, 95, 309, 430, 671
HpyAV	CCTTC	4 cut(s)	104, 372, 653, 695
HpyCH4III	ACNGT	2 cut(s)	235, 398
HpyCH4IV	ACGT	6 cut(s)	56, 90, 410, 493, 557, 807
HpyCH4V	TGCA	2 cut(s)	257, 849
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 146, 332, 547, 663, 672, 846
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	6 cut(s)	56, 90, 410, 493, 557, 807
Hsp92I	GRCGYC	2 cut(s)	38, 90
Hsp92II	CATG	2 cut(s)	102, 457
HspAI	GCGC	4 cut(s)	20, 38, 541, 821
KasI	GGCGCC	1 cut(s)	37
KflI	GGGWCCC	1 cut(s)	783
Kpn2I	TCCGGA	1 cut(s)	270
Ksp22I	TGATCA	3 cut(s)	73, 391, 606
Kzo9I	GATC	6 cut(s)	26, 73, 154, 286, 391, 606
LmnI	GCTCC	3 cut(s)	410, 517, 680
Lsp1109I	GCAGC	2 cut(s)	550, 849
MaeI	CTAG	2 cut(s)	65, 551
MaeII	ACGT	6 cut(s)	56, 90, 410, 493, 557, 807
MaeIII	GTNAC	2 cut(s)	10, 553
MalI	GATC	6 cut(s)	28, 75, 156, 288, 393, 608
MboI	GATC	6 cut(s)	26, 73, 154, 286, 391, 606
MboII	GAAGA	6 cut(s)	119, 149, 152, 442, 544, 656
MflI	RGATCY	2 cut(s)	154, 286
MhlI	GDGCHC	2 cut(s)	515, 522
MluCI	AATT	6 cut(s)	184, 251, 373, 620, 710, 766
Mly113I	GGCGCC	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	377, 644
MnlI	CCTC	8 cut(s)	174, 269, 277, 608, 671, 679, 682, 741
MroI	TCCGGA	1 cut(s)	270
MseI	TTAA	3 cut(s)	47, 489, 624
MspI	CCGG	7 cut(s)	35, 239, 271, 420, 587, 629, 754
MspR9I	CCNGG	3 cut(s)	420, 438, 755
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	3 cut(s)	524, 543, 821
MwoI	GCNNNNNNNGC	7 cut(s)	14, 146, 332, 547, 663, 672, 846
NarI	GGCGCC	1 cut(s)	38
NciI	CCSGG	2 cut(s)	420, 755
NdeII	GATC	6 cut(s)	26, 73, 154, 286, 391, 606
NlaIII	CATG	2 cut(s)	102, 457
NlaIV	GGNNCC	4 cut(s)	39, 752, 784, 785
NmuCI	GTSAC	2 cut(s)	10, 553
PfeI	GAWTC	1 cut(s)	433
PflFI	GACNNNGTC	1 cut(s)	89
PinAI	ACCGGT	1 cut(s)	628
PkrI	GCNGC	6 cut(s)	19, 526, 529, 540, 674, 839
PleI	GAGTC	2 cut(s)	376, 643
PluTI	GGCGCC	1 cut(s)	41
PpsI	GAGTC	2 cut(s)	376, 643
PpuMI	RGGWCCY	1 cut(s)	783
Psp124BI	GAGCTC	2 cut(s)	515, 522
Psp5II	RGGWCCY	1 cut(s)	783
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	4 cut(s)	39, 752, 784, 785
PspPI	GGNCC	2 cut(s)	751, 783
PspPPI	RGGWCCY	1 cut(s)	783
PsuI	RGATCY	2 cut(s)	154, 286
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SacI	GAGCTC	2 cut(s)	515, 522
SaqAI	TTAA	3 cut(s)	47, 489, 624
SatI	GCNGC	6 cut(s)	18, 525, 528, 539, 673, 838
Sau3AI	GATC	6 cut(s)	26, 73, 154, 286, 391, 606
Sau96I	GGNCC	2 cut(s)	751, 783
SchI	GAGTC	2 cut(s)	377, 644
ScrFI	CCNGG	3 cut(s)	420, 438, 755
SduI	GDGCHC	2 cut(s)	515, 522
SfoI	GGCGCC	1 cut(s)	39
SinI	GGWCC	2 cut(s)	751, 783
SmlI	CTYRAG	2 cut(s)	190, 508
SmoI	CTYRAG	2 cut(s)	190, 508
Sse9I	AATT	6 cut(s)	184, 251, 373, 620, 710, 766
SsiI	CCGC	7 cut(s)	17, 279, 335, 524, 527, 672, 675
SspDI	GGCGCC	1 cut(s)	37
SspMI	CTAG	2 cut(s)	65, 551
SstI	GAGCTC	2 cut(s)	515, 522
StyD4I	CCNGG	3 cut(s)	418, 436, 753
TaaI	ACNGT	2 cut(s)	235, 398
TaiI	ACGT	6 cut(s)	59, 93, 413, 496, 560, 810
TaqI	TCGA	2 cut(s)	428, 597
TasI	AATT	6 cut(s)	184, 251, 373, 620, 710, 766
TauI	GCSGC	4 cut(s)	20, 527, 530, 675
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	3 cut(s)	47, 489, 624
Tru9I	TTAA	3 cut(s)	47, 489, 624
TseFI	GTSAC	2 cut(s)	10, 553
TseI	GCWGC	2 cut(s)	538, 837
Tsp45I	GTSAC	2 cut(s)	10, 553
TspDTI	ATGAA	3 cut(s)	87, 187, 774
TspGWI	ACGGA	3 cut(s)	234, 311, 809
Tth111I	GACNNNGTC	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	751, 783
XapI	RAATTY	2 cut(s)	251, 620
XspI	CTAG	2 cut(s)	65, 551
ZraI	GACGTC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.