Rmu_sc0001051.1_g000029

heat shock factor protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001051.1
Physical Location & Seq
Reverse (-)
99665 .. 102023
2359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001051.1_g000029.1.cds

Sequence Viewer

Length: 999 bp
atggctcaaaggtcagttccggcgccgtttctgatgaagacgttccagttggtggatgatccggccagcgacgatgtgatatcttggaacggaaatgggacggcgtttgtggtttggaagacggtggatttcgcccgggatatgttgcctaattatttcaagcacaacaacttctcaagcttcgttcgccagcttaacacctatggctttcgaaagaccgtgccggacaaatgggagttcgcgaacgacaacttccggcgaggtgagaaggagctgctctccgagatccgtcgccgaaaatctgtgtcgtcatctcaggctcaggcaaacgcagcggaaaaatcgggcggagacgccccgtcaaccccgtccaactccggcgaggacctggcgtcaacttccacgtcttcgccggactcgaagaatccgggatcggtggagacagcggcggcggtgtgccaggcggtggacttatccggcgagaacgagaaactgaagaaagacaacgagacgctgagctcggagcttgcacaaacaaagaagcagtgtgatgagctggtggcgtttctgatggagtacatgaaggtcgggcccgatcagatcaatcagattatgcggcaaggaagcttagggtccagctgtgatgttgatgatcatggtcgtggtcacactgagaatgataatgacgaaaaagttgtggcgggaggagaagagggtttgaaactgtttggggtttggctgaaggggaacgagagcgaggagaagaagaaaaggagggagaagaaatcgggtggtggtgggccgcaagcgaagaagatgaagatggcggagtttcacgcgccgctgaggaagagcgggaaggcctggcccttagcctcattttccaccacaaacatagcaaggcaactcaggaagcctcatcttcaaatcaaatgccgctatagtgcccttaaagagtttatgcatgcatttgacaaccctccaatacttgagatttag

Protein Analysis

332

Amino Acids

36.81

Weight (kDa)

8.5

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013192)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccB7I CCANNNNNTGG 2 cut(s) 52, 466
AccBSI CCGCTC 1 cut(s) 855
AccII CGCG 2 cut(s) 242, 839
AclWI GGATC 3 cut(s) 53, 280, 439
AcoI YGGCCR 1 cut(s) 63
AcuI CTGAAG 2 cut(s) 515, 761
AcyI GRCGYC 3 cut(s) 23, 354, 392
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 2 cut(s) 52, 466
AgsI TTSAA 3 cut(s) 160, 721, 926
AhdI GACNNNNNGTC 2 cut(s) 358, 391
AjiI CACGTC 1 cut(s) 405
AjnI CCWGG 3 cut(s) 387, 459, 863
AluBI AGCT 8 cut(s) 180, 193, 274, 519, 526, 556, 627, 639
AluI AGCT 8 cut(s) 180, 193, 274, 519, 526, 556, 627, 639
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 3 cut(s) 345, 434, 503
AlwI GGATC 3 cut(s) 53, 280, 439
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 5 cut(s) 63, 590, 800, 861, 866
ApaI GGGCCC 1 cut(s) 594
ApeKI GCWGC 2 cut(s) 274, 332
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 2 cut(s) 25, 841
AspS9I GGNCC 6 cut(s) 385, 590, 591, 633, 800, 867
AsuC2I CCSGG 3 cut(s) 136, 137, 429
AsuHPI GGTGA 1 cut(s) 275
AsuII TTCGAA 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 135
AvaII GGWCC 2 cut(s) 385, 633
BaeGI GKGCMC 2 cut(s) 594, 949
BanI GGYRCC 1 cut(s) 22
BanII GRGCYC 2 cut(s) 521, 594
BbsI GAAGAC 3 cut(s) 44, 125, 399
Bbv12I GWGCWC 1 cut(s) 521
BbvCI CCTCAGC 1 cut(s) 845
BbvI GCAGC 2 cut(s) 261, 344
BccI CCATC 2 cut(s) 565, 817
BceAI ACGGC 2 cut(s) 10, 117
BciT130I CCWGG 3 cut(s) 389, 461, 865
BclI TGATCA 1 cut(s) 652
BcnI CCSGG 3 cut(s) 136, 137, 429
BcoDI GTCTC 3 cut(s) 345, 434, 503
BfmI CTRYAG 1 cut(s) 940
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 8 cut(s) 275, 333, 447, 450, 617, 803, 842, 937
BlpI GCTNAGC 1 cut(s) 515
BlsI GCNGC 8 cut(s) 276, 334, 448, 451, 618, 804, 843, 938
Bme1390I CCNGG 6 cut(s) 136, 137, 389, 429, 461, 865
Bme18I GGWCC 2 cut(s) 385, 633
BmeRI GACNNNNNGTC 2 cut(s) 358, 391
BmeT110I CYCGRG 1 cut(s) 135
BmgBI CACGTC 1 cut(s) 405
BmgT120I GGNCC 6 cut(s) 385, 590, 591, 633, 800, 867
BmiI GGNNCC 3 cut(s) 24, 592, 634
BmrFI CCNGG 6 cut(s) 136, 137, 389, 429, 461, 865
BpiI GAAGAC 3 cut(s) 44, 125, 399
BplI GAGNNNNNCTC 2 cut(s) 263, 295
Bpu10I CCTNAGC 4 cut(s) 321, 628, 845, 871
Bpu1102I GCTNAGC 1 cut(s) 515
Bpu14I TTCGAA 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 160
BpuMI CCSGG 3 cut(s) 136, 137, 429
BsaHI GRCGYC 3 cut(s) 23, 354, 392
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 466
Bse1I ACTGG 1 cut(s) 46
BseBI CCWGG 3 cut(s) 389, 461, 865
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 52, 466
BseMII CTCAG 6 cut(s) 329, 335, 506, 663, 836, 922
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 2 cut(s) 720, 773
BseSI GKGCMC 2 cut(s) 594, 949
BseXI GCAGC 2 cut(s) 261, 344
Bsh1236I CGCG 2 cut(s) 242, 839
BshFI GGCC 5 cut(s) 65, 592, 802, 863, 868
BshNI GGYRCC 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 521
BsiHKCI CYCGRG 1 cut(s) 135
BsiSI CCGG 9 cut(s) 20, 62, 136, 224, 256, 378, 413, 428, 477
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 52, 466
BsmAI GTCTC 3 cut(s) 345, 434, 503
BsmBI CGTCTC 2 cut(s) 345, 503
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 5 cut(s) 65, 592, 802, 863, 868
BsoBI CYCGRG 1 cut(s) 135
Bsp119I TTCGAA 1 cut(s) 211
Bsp120I GGGCCC 1 cut(s) 590
Bsp1286I GDGCHC 3 cut(s) 521, 594, 949
Bsp143I GATC 6 cut(s) 58, 285, 431, 595, 600, 652
Bsp1720I GCTNAGC 1 cut(s) 515
Bsp68I TCGCGA 1 cut(s) 242
BspANI GGCC 5 cut(s) 65, 592, 802, 863, 868
BspCNI CTCAG 6 cut(s) 328, 334, 507, 664, 837, 921
BspFNI CGCG 2 cut(s) 242, 839
BspLI GGNNCC 3 cut(s) 24, 592, 634
BspPI GGATC 3 cut(s) 53, 280, 439
BspQI GCTCTTC 1 cut(s) 845
BspT104I TTCGAA 1 cut(s) 211
BspT107I GGYRCC 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 855
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 6 cut(s) 58, 285, 431, 595, 600, 652
BssNI GRCGYC 3 cut(s) 23, 354, 392
Bst2UI CCWGG 3 cut(s) 389, 461, 865
Bst4CI ACNGT 3 cut(s) 124, 220, 726
Bst6I CTCTTC 2 cut(s) 705, 845
BstACI GRCGYC 3 cut(s) 23, 354, 392
BstBI TTCGAA 1 cut(s) 211
BstC8I GCNNGC 5 cut(s) 67, 191, 528, 807, 966
BstDEI CTNAG 8 cut(s) 315, 321, 515, 628, 672, 845, 871, 908
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 2 cut(s) 242, 839
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 841
BstKTI GATC 6 cut(s) 61, 288, 434, 598, 603, 655
BstMAI GTCTC 3 cut(s) 345, 434, 503
BstMBI GATC 6 cut(s) 58, 285, 431, 595, 600, 652
BstMWI GCNNNNNNNGC 2 cut(s) 186, 332
BstNI CCWGG 3 cut(s) 389, 461, 865
BstNSI RCATGY 1 cut(s) 968
BstSCI CCNGG 6 cut(s) 134, 135, 387, 427, 459, 863
BstSFI CTRYAG 1 cut(s) 940
BstSLI GKGCMC 2 cut(s) 594, 949
BstUI CGCG 2 cut(s) 242, 839
BstV1I GCAGC 2 cut(s) 261, 344
BstV2I GAAGAC 3 cut(s) 44, 125, 399
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 5 cut(s) 65, 592, 802, 863, 868
BtrI CACGTC 1 cut(s) 405
BtsCI GGATG 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 2 cut(s) 551, 669
BtuMI TCGCGA 1 cut(s) 242
Cac8I GCNNGC 5 cut(s) 67, 191, 528, 807, 966
CfoI GCGC 2 cut(s) 25, 841
Cfr13I GGNCC 6 cut(s) 385, 590, 591, 633, 800, 867
Cfr9I CCCGGG 1 cut(s) 135
CseI GACGC 3 cut(s) 362, 381, 520
Csp6I GTAC 1 cut(s) 577
CviAII CATG 3 cut(s) 580, 656, 965
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 8 cut(s) 315, 321, 515, 628, 672, 845, 871, 908
DinI GGCGCC 1 cut(s) 24
DpnI GATC 6 cut(s) 60, 287, 433, 597, 602, 654
DpnII GATC 6 cut(s) 58, 285, 431, 595, 600, 652
DriI GACNNNNNGTC 2 cut(s) 358, 391
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 705, 845
Eam1105I GACNNNNNGTC 2 cut(s) 358, 391
EarI CTCTTC 2 cut(s) 705, 845
EciI GGCGGA 2 cut(s) 363, 842
Ecl136II GAGCTC 1 cut(s) 519
Eco147I AGGCCT 1 cut(s) 863
Eco24I GRGCYC 2 cut(s) 521, 594
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 2 cut(s) 385, 633
Eco53kI GAGCTC 1 cut(s) 519
Eco57I CTGAAG 2 cut(s) 515, 761
Eco88I CYCGRG 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 519
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 3 cut(s) 387, 459, 863
EcoRV GATATC 1 cut(s) 81
EcoT22I ATGCAT 2 cut(s) 966, 970
EcoT38I GRGCYC 2 cut(s) 521, 594
EgeI GGCGCC 1 cut(s) 24
EheI GGCGCC 1 cut(s) 24
Esp3I CGTCTC 2 cut(s) 345, 503
FaeI CATG 3 cut(s) 583, 659, 968
FaiI YATR 9 cut(s) 143, 204, 581, 614, 657, 896, 942, 962, 966
FaqI GGGAC 1 cut(s) 112
FatI CATG 3 cut(s) 579, 655, 964
FauI CCCGC 2 cut(s) 694, 848
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 8 cut(s) 275, 333, 447, 450, 617, 803, 842, 937
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 2 cut(s) 521, 594
Fsp4HI GCNGC 8 cut(s) 275, 333, 447, 450, 617, 803, 842, 937
GlaI GCGC 2 cut(s) 24, 840
GluI GCNGC 8 cut(s) 275, 333, 447, 450, 617, 803, 842, 937
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 5 cut(s) 65, 592, 802, 863, 868
HapII CCGG 9 cut(s) 20, 62, 136, 224, 256, 378, 413, 428, 477
HgaI GACGC 3 cut(s) 362, 381, 520
HhaI GCGC 2 cut(s) 25, 841
Hin1I GRCGYC 3 cut(s) 23, 354, 392
Hin1II CATG 3 cut(s) 583, 659, 968
Hin6I GCGC 2 cut(s) 23, 839
HinP1I GCGC 2 cut(s) 23, 839
HincII GTYRAC 2 cut(s) 363, 396
HindII GTYRAC 2 cut(s) 363, 396
HindIII AAGCTT 2 cut(s) 178, 625
HinfI GANTC 2 cut(s) 416, 424
HpaII CCGG 9 cut(s) 20, 62, 136, 224, 256, 378, 413, 428, 477
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 3 cut(s) 363, 396, 469
Hpy188I TCNGA 6 cut(s) 33, 283, 523, 570, 600, 609
Hpy188III TCNNGA 2 cut(s) 241, 910
Hpy8I GTNNAC 3 cut(s) 363, 396, 469
Hpy99I CGWCG 2 cut(s) 74, 294
HpyAV CCTTC 4 cut(s) 262, 577, 736, 853
HpyCH4III ACNGT 3 cut(s) 124, 220, 726
HpyCH4IV ACGT 2 cut(s) 41, 404
HpyCH4V TGCA 3 cut(s) 530, 964, 968
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 332
HpyF3I CTNAG 8 cut(s) 315, 321, 515, 628, 672, 845, 871, 908
HpySE526I ACGT 2 cut(s) 41, 404
Hsp92I GRCGYC 3 cut(s) 23, 354, 392
Hsp92II CATG 3 cut(s) 583, 659, 968
HspAI GCGC 2 cut(s) 23, 839
KasI GGCGCC 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 6 cut(s) 58, 285, 431, 595, 600, 652
LguI GCTCTTC 1 cut(s) 845
LmnI GCTCC 2 cut(s) 271, 523
Lsp1109I GCAGC 2 cut(s) 261, 344
MaeII ACGT 2 cut(s) 41, 404
MaeIII GTNAC 1 cut(s) 665
MalI GATC 6 cut(s) 60, 287, 433, 597, 602, 654
MbiI CCGCTC 1 cut(s) 855
MboI GATC 6 cut(s) 58, 285, 431, 595, 600, 652
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 3 cut(s) 521, 594, 949
MluCI AATT 1 cut(s) 151
Mly113I GGCGCC 1 cut(s) 23
MlyI GAGTC 1 cut(s) 410
MmeI TCCRAC 1 cut(s) 396
Mph1103I ATGCAT 2 cut(s) 966, 970
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 2 cut(s) 195, 951
MslI CAYNNNNRTG 1 cut(s) 660
MspA1I CMGCKG 4 cut(s) 335, 446, 639, 844
MspI CCGG 9 cut(s) 20, 62, 136, 224, 256, 378, 413, 428, 477
MspR9I CCNGG 6 cut(s) 136, 137, 389, 429, 461, 865
MvaI CCWGG 3 cut(s) 389, 461, 865
MvnI CGCG 2 cut(s) 242, 839
MwoI GCNNNNNNNGC 2 cut(s) 186, 332
NarI GGCGCC 1 cut(s) 23
NciI CCSGG 3 cut(s) 136, 137, 429
NdeII GATC 6 cut(s) 58, 285, 431, 595, 600, 652
NlaIII CATG 3 cut(s) 583, 659, 968
NlaIV GGNNCC 3 cut(s) 24, 592, 634
NmuCI GTSAC 1 cut(s) 665
NruI TCGCGA 1 cut(s) 242
NsiI ATGCAT 2 cut(s) 966, 970
NspI RCATGY 1 cut(s) 968
NspV TTCGAA 1 cut(s) 211
PaeI GCATGC 1 cut(s) 968
PceI AGGCCT 1 cut(s) 863
PciSI GCTCTTC 1 cut(s) 845
PcsI WCGNNNNNNNCGW 1 cut(s) 416
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 424
PflMI CCANNNNNTGG 2 cut(s) 52, 466
PfoI TCCNGGA 1 cut(s) 427
PkrI GCNGC 8 cut(s) 276, 334, 448, 451, 618, 804, 843, 938
PleI GAGTC 1 cut(s) 410
PluTI GGCGCC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 410
PpuMI RGGWCCY 1 cut(s) 385
Psp124BI GAGCTC 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 3 cut(s) 387, 459, 863
PspGI CCWGG 3 cut(s) 387, 459, 863
PspN4I GGNNCC 3 cut(s) 24, 592, 634
PspOMI GGGCCC 1 cut(s) 590
PspPI GGNCC 6 cut(s) 385, 590, 591, 633, 800, 867
PspPPI RGGWCCY 1 cut(s) 385
PsuI RGATCY 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 639
RruI TCGCGA 1 cut(s) 242
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
RseI CAYNNNNRTG 1 cut(s) 660
SacI GAGCTC 1 cut(s) 521
SapI GCTCTTC 1 cut(s) 845
SaqAI TTAA 2 cut(s) 195, 951
SatI GCNGC 8 cut(s) 275, 333, 447, 450, 617, 803, 842, 937
Sau3AI GATC 6 cut(s) 58, 285, 431, 595, 600, 652
Sau96I GGNCC 6 cut(s) 385, 590, 591, 633, 800, 867
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 6 cut(s) 136, 137, 389, 429, 461, 865
SduI GDGCHC 3 cut(s) 521, 594, 949
SfcI CTRYAG 1 cut(s) 940
SfoI GGCGCC 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 211
SinI GGWCC 2 cut(s) 385, 633
SmaI CCCGGG 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 2 cut(s) 175, 989
SmoI CTYRAG 2 cut(s) 175, 989
SphI GCATGC 1 cut(s) 968
Sse9I AATT 1 cut(s) 151
SseBI AGGCCT 1 cut(s) 863
SspDI GGCGCC 1 cut(s) 22
SstI GAGCTC 1 cut(s) 521
StuI AGGCCT 1 cut(s) 863
StyD4I CCNGG 6 cut(s) 134, 135, 387, 427, 459, 863
TaaI ACNGT 3 cut(s) 124, 220, 726
TaiI ACGT 2 cut(s) 44, 407
TaqI TCGA 2 cut(s) 211, 419
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 576
TauI GCSGC 6 cut(s) 449, 452, 619, 805, 844, 939
TfiI GAWTC 1 cut(s) 424
Tru1I TTAA 2 cut(s) 195, 951
Tru9I TTAA 2 cut(s) 195, 951
TscAI CASTG 2 cut(s) 551, 676
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 2 cut(s) 274, 332
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 3 cut(s) 50, 596, 833
TspGWI ACGGA 2 cut(s) 105, 278
TspMI CCCGGG 1 cut(s) 135
TspRI CASTG 2 cut(s) 551, 676
Van91I CCANNNNNTGG 2 cut(s) 52, 466
VpaK11BI GGWCC 2 cut(s) 385, 633
XceI RCATGY 1 cut(s) 968
XmaI CCCGGG 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 41
Zsp2I ATGCAT 2 cut(s) 966, 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.