MD15G1283700.v1.1

heat shock factor protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
25644254 .. 25647387
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1283700.v1.1.491

Sequence Viewer

Length: 885 bp
ATGGCGCAAAGGTCCGTTCCGGCGCCGTTTCTGATGAAAACGTATCAACTTGTGGATGATCCGAGCTCGGATGACGTGATATCGTGGAATGAAAGTGGGACGACGTTTGTGGTTTGGAAGACAGTGGATTTTGCGAGGGACATGTTGCCTAAATATTTCAAGCACAACAATTTCTCAAGCTTCGTCCGCCAGCTTAATACCTATGGATTTCGAAAGACTGTGCCGGACAAATGGGAGTTCGCGAACGACAACTTCCAGCGAGGGCAGAAGGAGCTCCTGTCCGAGATCCGCCGCCGGAAATCTGTGACGTCAACGGCGGCGCACGCACCCCCCGGCGAAAAATCCGGAGTACCATCGACACCGTCGAACTCGGGGGAGGAGATGGCGTCGACGTCGACGTCGTCGCCGGACTCGAAGAACCCGGGGTCGGTGGAGACGGCGGCTCCGAGCCAGGTGGCGGATTTATCGGACGAGAACCAGAAGCTGAAGCGGGAGAACGAAAATTTGAACTCGGAGCTGGCGCAGACGAAGAAGCAGTGCGACGAGCTGGTGGGGTTTCTGGTGGAGCACATGAAGATGAAGCCCGATCAGATCAACCGCATCATCGGGCAGGGAATCTGTGGGCCCAGCGGCGATGATTTTGAAGCGGACGATCATGGTCTTGATCTGGATATGGAGGGTGGTGATGATGAGGAAGAAGAGGAGGGATTGAAGCTGTTTGGGGTTTGGGTGAAAGGAGAGGAGAAAATGAAGGGGAAGAAAACGGGGCGATATGAGATATTGGGGGTTGGTGGTGGCGGTGCCGGCGGGCCCCGCGCGAAGAGGATGAAGGGAGGGGTGGAGTTTCACGCGCCGATGATGAGGACCGGGAAGGTGTGCAACTAG

Protein Analysis

295

Amino Acids

32.42

Weight (kDa)

5.44

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 10 - 99 2.5e-31 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013192)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 397
AatII GACGTC 3 cut(s) 311, 395, 401
AccB1I GGYRCC 2 cut(s) 22, 800
AccI GTMKAC 2 cut(s) 389, 395
AccII CGCG 4 cut(s) 242, 816, 818, 851
AccIII TCCGGA 1 cut(s) 344
AclWI GGATC 2 cut(s) 53, 280
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 506
AcyI GRCGYC 5 cut(s) 23, 308, 386, 392, 398
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 2 cut(s) 427, 457
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 4 cut(s) 160, 508, 644, 712
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 8 cut(s) 66, 180, 193, 274, 484, 517, 547, 715
AluI AGCT 8 cut(s) 66, 180, 193, 274, 484, 517, 547, 715
Alw21I GWGCWC 3 cut(s) 68, 276, 570
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 2 cut(s) 53, 280
AlwNI CAGNNNCTG 1 cut(s) 484
Ama87I CYCGRG 2 cut(s) 370, 421
Aor13HI TCCGGA 1 cut(s) 344
AoxI GGCC 2 cut(s) 623, 809
ApaI GGGCCC 2 cut(s) 627, 813
ApoI RAATTY 1 cut(s) 502
AspLEI GCGC 6 cut(s) 7, 25, 322, 523, 818, 853
AspS9I GGNCC 6 cut(s) 12, 623, 624, 809, 810, 864
AsuC2I CCSGG 4 cut(s) 333, 422, 423, 868
AsuHPI GGTGA 2 cut(s) 695, 742
AsuII TTCGAA 1 cut(s) 211
AvaI CYCGRG 2 cut(s) 370, 421
AvaII GGWCC 2 cut(s) 12, 864
BaeGI GKGCMC 2 cut(s) 627, 813
BanI GGYRCC 2 cut(s) 22, 800
BanII GRGCYC 4 cut(s) 68, 276, 627, 813
BbsI GAAGAC 1 cut(s) 125
Bbv12I GWGCWC 3 cut(s) 68, 276, 570
BccI CCATC 2 cut(s) 361, 376
BceAI ACGGC 3 cut(s) 10, 330, 453
BciT130I CCWGG 1 cut(s) 452
BcnI CCSGG 4 cut(s) 333, 422, 423, 868
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 883
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 4 cut(s) 292, 318, 441, 631
BlsI GCNGC 4 cut(s) 293, 319, 442, 632
Bme1390I CCNGG 5 cut(s) 333, 422, 423, 452, 868
Bme18I GGWCC 2 cut(s) 12, 864
BmeT110I CYCGRG 2 cut(s) 370, 421
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 6 cut(s) 12, 623, 624, 809, 810, 864
BmiI GGNNCC 6 cut(s) 24, 444, 625, 802, 811, 812
BmrFI CCNGG 5 cut(s) 333, 422, 423, 452, 868
BmsI GCATC 1 cut(s) 609
BpiI GAAGAC 1 cut(s) 125
Bpu14I TTCGAA 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 160
BpuMI CCSGG 4 cut(s) 333, 422, 423, 868
BsaHI GRCGYC 5 cut(s) 23, 308, 386, 392, 398
BsaJI CCNNGG 3 cut(s) 331, 421, 422
BsaWI WCCGGW 1 cut(s) 344
BsaXI ACNNNNNCTCC 6 cut(s) 263, 293, 371, 401, 427, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 457
Bse118I RCCGGY 1 cut(s) 803
BseAI TCCGGA 1 cut(s) 344
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 3 cut(s) 331, 421, 422
BseGI GGATG 3 cut(s) 61, 76, 831
BseLI CCNNNNNNNGG 2 cut(s) 427, 457
BseRI GAGGAG 3 cut(s) 392, 716, 755
BseSI GKGCMC 2 cut(s) 627, 813
BseYI CCCAGC 1 cut(s) 626
Bsh1236I CGCG 4 cut(s) 242, 816, 818, 851
BshFI GGCC 2 cut(s) 625, 811
BshNI GGYRCC 2 cut(s) 22, 800
BsiHKAI GWGCWC 3 cut(s) 68, 276, 570
BsiHKCI CYCGRG 2 cut(s) 370, 421
BsiSI CCGG 9 cut(s) 20, 224, 295, 333, 345, 407, 422, 804, 867
BslFI GGGAC 2 cut(s) 112, 152
BslI CCNNNNNNNGG 2 cut(s) 427, 457
BsmAI GTCTC 1 cut(s) 428
BsmBI CGTCTC 1 cut(s) 428
BsmFI GGGAC 2 cut(s) 112, 152
BsnI GGCC 2 cut(s) 625, 811
BsoBI CYCGRG 2 cut(s) 370, 421
Bsp119I TTCGAA 1 cut(s) 211
Bsp120I GGGCCC 2 cut(s) 623, 809
Bsp1286I GDGCHC 5 cut(s) 68, 276, 570, 627, 813
Bsp13I TCCGGA 1 cut(s) 344
Bsp143I GATC 6 cut(s) 58, 285, 586, 591, 652, 664
Bsp68I TCGCGA 1 cut(s) 242
BspANI GGCC 2 cut(s) 625, 811
BspEI TCCGGA 1 cut(s) 344
BspFNI CGCG 4 cut(s) 242, 816, 818, 851
BspLI GGNNCC 6 cut(s) 24, 444, 625, 802, 811, 812
BspPI GGATC 2 cut(s) 53, 280
BspT104I TTCGAA 1 cut(s) 211
BspT107I GGYRCC 2 cut(s) 22, 800
BsrFI RCCGGY 1 cut(s) 803
BssAI RCCGGY 1 cut(s) 803
BssECI CCNNGG 3 cut(s) 331, 421, 422
BssMI GATC 6 cut(s) 58, 285, 586, 591, 652, 664
BssNI GRCGYC 5 cut(s) 23, 308, 386, 392, 398
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 3 cut(s) 124, 220, 363
Bst6I CTCTTC 2 cut(s) 693, 815
BstACI GRCGYC 5 cut(s) 23, 308, 386, 392, 398
BstBI TTCGAA 1 cut(s) 211
BstC8I GCNNGC 5 cut(s) 191, 324, 519, 805, 809
BstF5I GGATG 3 cut(s) 61, 76, 831
BstFNI CGCG 4 cut(s) 242, 816, 818, 851
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 6 cut(s) 7, 25, 322, 523, 818, 853
BstKTI GATC 6 cut(s) 61, 288, 589, 594, 655, 667
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 6 cut(s) 58, 285, 586, 591, 652, 664
BstMWI GCNNNNNNNGC 5 cut(s) 186, 271, 323, 804, 813
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 5 cut(s) 331, 420, 421, 450, 866
BstSLI GKGCMC 2 cut(s) 627, 813
BstUI CGCG 4 cut(s) 242, 816, 818, 851
BstV2I GAAGAC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 2 cut(s) 625, 811
BtgZI GCGATG 1 cut(s) 648
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 3 cut(s) 61, 76, 831
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 2 cut(s) 129, 542
BtuMI TCGCGA 1 cut(s) 242
Cac8I GCNNGC 5 cut(s) 191, 324, 519, 805, 809
CaiI CAGNNNCTG 1 cut(s) 484
CfoI GCGC 6 cut(s) 7, 25, 322, 523, 818, 853
Cfr10I RCCGGY 1 cut(s) 803
Cfr13I GGNCC 6 cut(s) 12, 623, 624, 809, 810, 864
Cfr9I CCCGGG 1 cut(s) 421
CseI GACGC 1 cut(s) 375
Csp6I GTAC 1 cut(s) 350
CviAII CATG 3 cut(s) 142, 571, 656
CviQI GTAC 1 cut(s) 350
DinI GGCGCC 1 cut(s) 24
DpnI GATC 6 cut(s) 60, 287, 588, 593, 654, 666
DpnII GATC 6 cut(s) 58, 285, 586, 591, 652, 664
DrdI GACNNNNNNGTC 1 cut(s) 397
DseDI GACNNNNNNGTC 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 693, 815
EarI CTCTTC 2 cut(s) 693, 815
EciI GGCGGA 3 cut(s) 176, 278, 473
Ecl136II GAGCTC 2 cut(s) 66, 274
Eco24I GRGCYC 4 cut(s) 68, 276, 627, 813
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 2 cut(s) 12, 864
Eco53kI GAGCTC 2 cut(s) 66, 274
Eco57I CTGAAG 1 cut(s) 506
Eco88I CYCGRG 2 cut(s) 370, 421
EcoICRI GAGCTC 2 cut(s) 66, 274
EcoO109I RGGNCCY 1 cut(s) 810
EcoRII CCWGG 1 cut(s) 450
EcoRV GATATC 1 cut(s) 81
EcoT38I GRGCYC 4 cut(s) 68, 276, 627, 813
EgeI GGCGCC 1 cut(s) 24
EheI GGCGCC 1 cut(s) 24
Esp3I CGTCTC 1 cut(s) 428
FaeI CATG 3 cut(s) 145, 574, 659
FaiI YATR 6 cut(s) 143, 204, 572, 657, 674, 774
FaqI GGGAC 2 cut(s) 112, 152
FatI CATG 3 cut(s) 141, 570, 655
FauI CCCGC 3 cut(s) 483, 800, 821
FblI GTMKAC 2 cut(s) 389, 395
Fnu4HI GCNGC 4 cut(s) 292, 318, 441, 631
FokI GGATG 3 cut(s) 68, 83, 838
FriOI GRGCYC 4 cut(s) 68, 276, 627, 813
Fsp4HI GCNGC 4 cut(s) 292, 318, 441, 631
FspBI CTAG 1 cut(s) 883
GlaI GCGC 6 cut(s) 6, 24, 321, 522, 817, 852
GluI GCNGC 4 cut(s) 292, 318, 441, 631
GsaI CCCAGC 1 cut(s) 630
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 2 cut(s) 625, 811
HapII CCGG 9 cut(s) 20, 224, 295, 333, 345, 407, 422, 804, 867
HgaI GACGC 1 cut(s) 375
HhaI GCGC 6 cut(s) 7, 25, 322, 523, 818, 853
Hin1I GRCGYC 5 cut(s) 23, 308, 386, 392, 398
Hin1II CATG 3 cut(s) 145, 574, 659
Hin6I GCGC 6 cut(s) 5, 23, 320, 521, 816, 851
HinP1I GCGC 6 cut(s) 5, 23, 320, 521, 816, 851
HincII GTYRAC 3 cut(s) 312, 390, 396
HindII GTYRAC 3 cut(s) 312, 390, 396
HindIII AAGCTT 1 cut(s) 178
HinfI GANTC 2 cut(s) 410, 615
HpaII CCGG 9 cut(s) 20, 224, 295, 333, 345, 407, 422, 804, 867
HphI GGTGA 2 cut(s) 695, 742
Hpy166II GTNNAC 3 cut(s) 312, 390, 396
Hpy188I TCNGA 8 cut(s) 33, 63, 70, 283, 447, 469, 514, 591
Hpy188III TCNNGA 4 cut(s) 241, 345, 662, 668
Hpy8I GTNNAC 3 cut(s) 312, 390, 396
Hpy99I CGWCG 9 cut(s) 106, 367, 391, 394, 397, 400, 403, 406, 545
HpyAV CCTTC 4 cut(s) 262, 745, 823, 865
HpyCH4III ACNGT 3 cut(s) 124, 220, 363
HpyCH4IV ACGT 6 cut(s) 41, 75, 104, 308, 392, 398
HpyCH4V TGCA 1 cut(s) 879
HpyF10VI GCNNNNNNNGC 5 cut(s) 186, 271, 323, 804, 813
HpySE526I ACGT 6 cut(s) 41, 75, 104, 308, 392, 398
Hsp92I GRCGYC 5 cut(s) 23, 308, 386, 392, 398
Hsp92II CATG 3 cut(s) 145, 574, 659
HspAI GCGC 6 cut(s) 5, 23, 320, 521, 816, 851
KasI GGCGCC 1 cut(s) 22
Kpn2I TCCGGA 1 cut(s) 344
KroI GCCGGC 1 cut(s) 803
KroNI GCCGGC 1 cut(s) 805
Kzo9I GATC 6 cut(s) 58, 285, 586, 591, 652, 664
LmnI GCTCC 5 cut(s) 271, 279, 448, 514, 565
LweI GCATC 1 cut(s) 609
MaeI CTAG 1 cut(s) 883
MaeII ACGT 6 cut(s) 41, 75, 104, 308, 392, 398
MaeIII GTNAC 1 cut(s) 304
MalI GATC 6 cut(s) 60, 287, 588, 593, 654, 666
MboI GATC 6 cut(s) 58, 285, 586, 591, 652, 664
MboII GAAGA 8 cut(s) 130, 427, 541, 586, 707, 710, 769, 832
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 5 cut(s) 68, 276, 570, 627, 813
MluCI AATT 2 cut(s) 169, 502
Mly113I GGCGCC 1 cut(s) 23
MlyI GAGTC 1 cut(s) 404
MroI TCCGGA 1 cut(s) 344
MroNI GCCGGC 1 cut(s) 803
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 630
MspI CCGG 9 cut(s) 20, 224, 295, 333, 345, 407, 422, 804, 867
MspR9I CCNGG 5 cut(s) 333, 422, 423, 452, 868
MvaI CCWGG 1 cut(s) 452
MvnI CGCG 4 cut(s) 242, 816, 818, 851
MwoI GCNNNNNNNGC 5 cut(s) 186, 271, 323, 804, 813
NaeI GCCGGC 1 cut(s) 805
NarI GGCGCC 1 cut(s) 23
NciI CCSGG 4 cut(s) 333, 422, 423, 868
NdeII GATC 6 cut(s) 58, 285, 586, 591, 652, 664
NgoMIV GCCGGC 1 cut(s) 803
NlaIII CATG 3 cut(s) 145, 574, 659
NlaIV GGNNCC 6 cut(s) 24, 444, 625, 802, 811, 812
NmuCI GTSAC 1 cut(s) 304
NruI TCGCGA 1 cut(s) 242
NspI RCATGY 1 cut(s) 145
NspV TTCGAA 1 cut(s) 211
PciI ACATGT 1 cut(s) 141
PcsI WCGNNNNNNNCGW 5 cut(s) 362, 395, 398, 410, 443
PdiI GCCGGC 1 cut(s) 805
PfeI GAWTC 1 cut(s) 615
PflFI GACNNNGTC 2 cut(s) 361, 400
PkrI GCNGC 4 cut(s) 293, 319, 442, 632
PleI GAGTC 1 cut(s) 404
PluTI GGCGCC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 404
PscI ACATGT 1 cut(s) 141
Psp124BI GAGCTC 2 cut(s) 68, 276
Psp6I CCWGG 1 cut(s) 450
PspFI CCCAGC 1 cut(s) 626
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 6 cut(s) 24, 444, 625, 802, 811, 812
PspOMI GGGCCC 2 cut(s) 623, 809
PspPI GGNCC 6 cut(s) 12, 623, 624, 809, 810, 864
PstNI CAGNNNCTG 1 cut(s) 484
PsuI RGATCY 1 cut(s) 285
PsyI GACNNNGTC 2 cut(s) 361, 400
RruI TCGCGA 1 cut(s) 242
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 575
SacI GAGCTC 2 cut(s) 68, 276
SalI GTCGAC 2 cut(s) 388, 394
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 4 cut(s) 292, 318, 441, 631
Sau3AI GATC 6 cut(s) 58, 285, 586, 591, 652, 664
Sau96I GGNCC 6 cut(s) 12, 623, 624, 809, 810, 864
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 5 cut(s) 333, 422, 423, 452, 868
SduI GDGCHC 5 cut(s) 68, 276, 570, 627, 813
SfaNI GCATC 1 cut(s) 609
SfoI GGCGCC 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 211
SgrDI CGTCGACG 2 cut(s) 388, 394
SinI GGWCC 2 cut(s) 12, 864
SmaI CCCGGG 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 2 cut(s) 169, 502
SspDI GGCGCC 1 cut(s) 22
SspI AATATT 1 cut(s) 155
SspMI CTAG 1 cut(s) 883
SstI GAGCTC 2 cut(s) 68, 276
StyD4I CCNGG 5 cut(s) 331, 420, 421, 450, 866
TaaI ACNGT 3 cut(s) 124, 220, 363
TaiI ACGT 6 cut(s) 44, 78, 107, 311, 395, 401
TaqI TCGA 6 cut(s) 211, 356, 365, 389, 395, 413
TasI AATT 2 cut(s) 169, 502
TauI GCSGC 4 cut(s) 294, 320, 443, 633
TfiI GAWTC 1 cut(s) 615
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 2 cut(s) 129, 542
TseFI GTSAC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 6 cut(s) 50, 105, 587, 593, 764, 842
TspGWI ACGGA 1 cut(s) 4
TspMI CCCGGG 1 cut(s) 421
TspRI CASTG 2 cut(s) 129, 542
Tth111I GACNNNGTC 2 cut(s) 361, 400
VpaK11BI GGWCC 2 cut(s) 12, 864
XapI RAATTY 1 cut(s) 502
XceI RCATGY 1 cut(s) 145
XmaI CCCGGG 1 cut(s) 421
XmiI GTMKAC 2 cut(s) 389, 395
XspI CTAG 1 cut(s) 883
ZraI GACGTC 3 cut(s) 309, 393, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.