Rh2CG184700

heat shock factor protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013192
Physical Location & Seq
Reverse (-)
17139845 .. 17142909
3065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG184700.1

Sequence Viewer

Length: 894 bp
ATGCAGATGATCAAAATGGCTCAAAGGTCAGTTCCGGCGCCGTTTCTAATGAAGACGTTCCAGTTGGTGGATGATCCGGCCAGCGACGACGTGATATCTTGGAACGAAAGTGGGACGGCGTTTGTGGTTTGGAAGACGGTGGATTTCGCCCGGGATATGTTGCCTAATTATTTCAAGCACAACAACTTCTCAAGCTTCGTTCGCCAGCTTAACACCTATGGCTTTCGTAAGACCGCGCCGGACAAATGGGAGTTCGCGAACGACAACTTCCGGCGAGGTGAGAAGGAGCTGCTCTCCGAGATCCGCCGCCGAAAATCGGTGTCGTCATCTCCGGCTCAGGCAAACGCAGCGGAAAAATCCGGCGGAGACGCCCCGTCAACCCCGTCCAATTCCGGCGAGGACCTGGCGTCAACTTCCACGTCTTCGCCGGACTCGAAGAATCCGGGATCGGTGGAGACAGCGGCGGCGGTGTGCCAGGCGGTGGACTTATCCGGTGAGAACGAGAAACTGAAGAAAGACAACGAGACGCTGAGCTCGGAGCTTGCACAAACAAAGAAGCAGTGTGATGAGCTGGTGGCGTTTCTGATGGAGTACATGAAGGTCGGGCCCGATCAGATCAATCAGATTATGCGGCAAGGAAGCTTAGGGTCCAGCTGTGATGTTGATGATCATGGTCGTGGTCACAGTGAGAATGATAATGACGAAAAAGTTGTGGCGGGAGGAGAAGAGGGTTTGAAACTGTTTGGGGTTTGGCTGAAGGGGAACGAGAACGAGGAGAAGAAGAAAAGGAGGGAGGAGAAATCGGGTGGTGGTGGTGGTGGGCCGCAAGCGAAGAAGATGAAGATGGCGGAGTTTCACGCGCCGCTGAGGAAGAGCGGGAAGGTGTACAACTAA

Protein Analysis

297

Amino Acids

32.7

Weight (kDa)

6.18

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 15 - 104 2.6e-30 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36990
fragaria_vesca FvH4_1g16030
malus_domestica MD02G1171800.v1.1 MD15G1283700.v1.1
prunus_persica Prupe.7G133600_v2.0.a1
pyrus_communis pycom02g13850 pycom15g24670
rosa_chinensis RchiOBHm_Chr2g0105601
rosa_laevigata RLG00000017444
rosa_multiflora Rmu_co8474487.1_g000001 Rmu_sc0001051.1_g000029
rosa_roxburghii Rroxscaffold_2G00138040
rosa_rugosa Rorug02G0129000
rosa_samantha Rh2AG180500 Rh2BG189300 Rh2CG184700 Rh2DG186200
rosa_wichuraiana Rw2G014110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AccB7I CCANNNNNTGG 2 cut(s) 67, 481
AccBSI CCGCTC 1 cut(s) 876
AccII CGCG 3 cut(s) 236, 257, 860
AclWI GGATC 3 cut(s) 68, 295, 454
AcoI YGGCCR 1 cut(s) 78
AcuI CTGAAG 2 cut(s) 530, 776
AcyI GRCGYC 3 cut(s) 38, 369, 407
AfaI GTAC 2 cut(s) 593, 887
AfiI CCNNNNNNNGG 3 cut(s) 67, 316, 481
AgsI TTSAA 2 cut(s) 175, 736
AhdI GACNNNNNGTC 2 cut(s) 373, 406
AjiI CACGTC 2 cut(s) 91, 420
AjnI CCWGG 2 cut(s) 402, 474
AluBI AGCT 8 cut(s) 195, 208, 289, 534, 541, 571, 642, 654
AluI AGCT 8 cut(s) 195, 208, 289, 534, 541, 571, 642, 654
Alw21I GWGCWC 1 cut(s) 536
Alw26I GTCTC 3 cut(s) 360, 449, 518
AlwI GGATC 3 cut(s) 68, 295, 454
Ama87I CYCGRG 1 cut(s) 150
AoxI GGCC 3 cut(s) 78, 605, 821
ApaI GGGCCC 1 cut(s) 609
ApeKI GCWGC 2 cut(s) 289, 347
Asp700I GAANNNNTTC 1 cut(s) 56
AspLEI GCGC 3 cut(s) 40, 238, 862
AspS9I GGNCC 5 cut(s) 400, 605, 606, 648, 821
AsuC2I CCSGG 3 cut(s) 151, 152, 444
AsuHPI GGTGA 2 cut(s) 290, 506
AvaI CYCGRG 1 cut(s) 150
AvaII GGWCC 2 cut(s) 400, 648
BaeGI GKGCMC 1 cut(s) 609
BanI GGYRCC 1 cut(s) 37
BanII GRGCYC 2 cut(s) 536, 609
BbsI GAAGAC 3 cut(s) 59, 140, 414
Bbv12I GWGCWC 1 cut(s) 536
BbvCI CCTCAGC 1 cut(s) 866
BbvI GCAGC 2 cut(s) 276, 359
BccI CCATC 2 cut(s) 580, 838
BceAI ACGGC 2 cut(s) 25, 132
BciT130I CCWGG 2 cut(s) 404, 476
BclI TGATCA 2 cut(s) 9, 667
BcnI CCSGG 3 cut(s) 151, 152, 444
BcoDI GTCTC 3 cut(s) 360, 449, 518
BfoI RGCGCY 1 cut(s) 41
BisI GCNGC 8 cut(s) 290, 307, 348, 462, 465, 632, 824, 863
BlpI GCTNAGC 1 cut(s) 530
BlsI GCNGC 8 cut(s) 291, 308, 349, 463, 466, 633, 825, 864
Bme1390I CCNGG 5 cut(s) 151, 152, 404, 444, 476
Bme18I GGWCC 2 cut(s) 400, 648
BmeRI GACNNNNNGTC 2 cut(s) 373, 406
BmeT110I CYCGRG 1 cut(s) 150
BmgBI CACGTC 2 cut(s) 91, 420
BmgT120I GGNCC 5 cut(s) 400, 605, 606, 648, 821
BmiI GGNNCC 3 cut(s) 39, 607, 649
BmrFI CCNGG 5 cut(s) 151, 152, 404, 444, 476
BpiI GAAGAC 3 cut(s) 59, 140, 414
BplI GAGNNNNNCTC 2 cut(s) 278, 310
Bpu10I CCTNAGC 3 cut(s) 336, 643, 866
Bpu1102I GCTNAGC 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 3 cut(s) 151, 152, 444
BsaHI GRCGYC 3 cut(s) 38, 369, 407
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 491
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 316, 481
Bse1I ACTGG 1 cut(s) 61
BseBI CCWGG 2 cut(s) 404, 476
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 3 cut(s) 67, 316, 481
BseMII CTCAG 3 cut(s) 350, 521, 857
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 3 cut(s) 735, 788, 809
BseSI GKGCMC 1 cut(s) 609
BseXI GCAGC 2 cut(s) 276, 359
Bsh1236I CGCG 3 cut(s) 236, 257, 860
BshFI GGCC 3 cut(s) 80, 607, 823
BshNI GGYRCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 536
BsiHKCI CYCGRG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 3 cut(s) 67, 316, 481
BsmAI GTCTC 3 cut(s) 360, 449, 518
BsmBI CGTCTC 2 cut(s) 360, 518
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 3 cut(s) 80, 607, 823
BsoBI CYCGRG 1 cut(s) 150
Bsp120I GGGCCC 1 cut(s) 605
Bsp1286I GDGCHC 2 cut(s) 536, 609
Bsp1407I TGTACA 1 cut(s) 885
Bsp143I GATC 7 cut(s) 9, 73, 300, 446, 610, 615, 667
Bsp1720I GCTNAGC 1 cut(s) 530
Bsp68I TCGCGA 1 cut(s) 257
BspANI GGCC 3 cut(s) 80, 607, 823
BspCNI CTCAG 3 cut(s) 349, 522, 858
BspFNI CGCG 3 cut(s) 236, 257, 860
BspLI GGNNCC 3 cut(s) 39, 607, 649
BspPI GGATC 3 cut(s) 68, 295, 454
BspQI GCTCTTC 1 cut(s) 866
BspT107I GGYRCC 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 876
BsrGI TGTACA 1 cut(s) 885
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 7 cut(s) 9, 73, 300, 446, 610, 615, 667
BssNI GRCGYC 3 cut(s) 38, 369, 407
Bst2UI CCWGG 2 cut(s) 404, 476
Bst4CI ACNGT 3 cut(s) 139, 686, 741
Bst6I CTCTTC 2 cut(s) 720, 866
BstACI GRCGYC 3 cut(s) 38, 369, 407
BstAUI TGTACA 1 cut(s) 885
BstC8I GCNNGC 4 cut(s) 82, 206, 543, 828
BstDEI CTNAG 4 cut(s) 336, 530, 643, 866
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 3 cut(s) 236, 257, 860
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 3 cut(s) 40, 238, 862
BstKTI GATC 7 cut(s) 12, 76, 303, 449, 613, 618, 670
BstMAI GTCTC 3 cut(s) 360, 449, 518
BstMBI GATC 7 cut(s) 9, 73, 300, 446, 610, 615, 667
BstMWI GCNNNNNNNGC 2 cut(s) 201, 347
BstNI CCWGG 2 cut(s) 404, 476
BstSCI CCNGG 5 cut(s) 149, 150, 402, 442, 474
BstSLI GKGCMC 1 cut(s) 609
BstUI CGCG 3 cut(s) 236, 257, 860
BstV1I GCAGC 2 cut(s) 276, 359
BstV2I GAAGAC 3 cut(s) 59, 140, 414
BstX2I RGATCY 1 cut(s) 300
BstYI RGATCY 1 cut(s) 300
BsuRI GGCC 3 cut(s) 80, 607, 823
BtrI CACGTC 2 cut(s) 91, 420
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 2 cut(s) 566, 691
BtuMI TCGCGA 1 cut(s) 257
Cac8I GCNNGC 4 cut(s) 82, 206, 543, 828
CfoI GCGC 3 cut(s) 40, 238, 862
Cfr13I GGNCC 5 cut(s) 400, 605, 606, 648, 821
Cfr9I CCCGGG 1 cut(s) 150
CseI GACGC 3 cut(s) 377, 396, 535
Csp6I GTAC 2 cut(s) 592, 886
CviAII CATG 2 cut(s) 595, 671
CviQI GTAC 2 cut(s) 592, 886
DdeI CTNAG 4 cut(s) 336, 530, 643, 866
DinI GGCGCC 1 cut(s) 39
DpnI GATC 7 cut(s) 11, 75, 302, 448, 612, 617, 669
DpnII GATC 7 cut(s) 9, 73, 300, 446, 610, 615, 667
DriI GACNNNNNGTC 2 cut(s) 373, 406
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 720, 866
Eam1105I GACNNNNNGTC 2 cut(s) 373, 406
EarI CTCTTC 2 cut(s) 720, 866
EciI GGCGGA 3 cut(s) 293, 378, 863
Ecl136II GAGCTC 1 cut(s) 534
Eco24I GRGCYC 2 cut(s) 536, 609
Eco32I GATATC 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 400, 648
Eco53kI GAGCTC 1 cut(s) 534
Eco57I CTGAAG 2 cut(s) 530, 776
Eco88I CYCGRG 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 400
EcoRII CCWGG 2 cut(s) 402, 474
EcoRV GATATC 1 cut(s) 96
EcoT38I GRGCYC 2 cut(s) 536, 609
EgeI GGCGCC 1 cut(s) 39
EheI GGCGCC 1 cut(s) 39
Esp3I CGTCTC 2 cut(s) 360, 518
FaeI CATG 2 cut(s) 598, 674
FaiI YATR 5 cut(s) 158, 219, 596, 629, 672
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 594, 670
FauI CCCGC 2 cut(s) 709, 869
FbaI TGATCA 2 cut(s) 9, 667
Fnu4HI GCNGC 8 cut(s) 290, 307, 348, 462, 465, 632, 824, 863
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 2 cut(s) 536, 609
Fsp4HI GCNGC 8 cut(s) 290, 307, 348, 462, 465, 632, 824, 863
GlaI GCGC 3 cut(s) 39, 237, 861
GluI GCNGC 8 cut(s) 290, 307, 348, 462, 465, 632, 824, 863
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 3 cut(s) 80, 607, 823
HgaI GACGC 3 cut(s) 377, 396, 535
HhaI GCGC 3 cut(s) 40, 238, 862
Hin1I GRCGYC 3 cut(s) 38, 369, 407
Hin1II CATG 2 cut(s) 598, 674
Hin6I GCGC 3 cut(s) 38, 236, 860
HinP1I GCGC 3 cut(s) 38, 236, 860
HincII GTYRAC 2 cut(s) 378, 411
HindII GTYRAC 2 cut(s) 378, 411
HindIII AAGCTT 2 cut(s) 193, 640
HinfI GANTC 2 cut(s) 431, 439
HphI GGTGA 2 cut(s) 290, 506
Hpy166II GTNNAC 4 cut(s) 378, 411, 484, 886
Hpy188I TCNGA 5 cut(s) 298, 538, 585, 615, 624
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 4 cut(s) 378, 411, 484, 886
Hpy99I CGWCG 2 cut(s) 89, 92
HpyAV CCTTC 4 cut(s) 277, 592, 751, 874
HpyCH4III ACNGT 3 cut(s) 139, 686, 741
HpyCH4IV ACGT 3 cut(s) 56, 90, 419
HpyCH4V TGCA 2 cut(s) 4, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 201, 347
HpyF3I CTNAG 4 cut(s) 336, 530, 643, 866
HpySE526I ACGT 3 cut(s) 56, 90, 419
Hsp92I GRCGYC 3 cut(s) 38, 369, 407
Hsp92II CATG 2 cut(s) 598, 674
HspAI GCGC 3 cut(s) 38, 236, 860
KasI GGCGCC 1 cut(s) 37
Ksp22I TGATCA 2 cut(s) 9, 667
Kzo9I GATC 7 cut(s) 9, 73, 300, 446, 610, 615, 667
LguI GCTCTTC 1 cut(s) 866
LmnI GCTCC 2 cut(s) 286, 538
Lsp1109I GCAGC 2 cut(s) 276, 359
MaeII ACGT 3 cut(s) 56, 90, 419
MaeIII GTNAC 1 cut(s) 680
MalI GATC 7 cut(s) 11, 75, 302, 448, 612, 617, 669
MbiI CCGCTC 1 cut(s) 876
MboI GATC 7 cut(s) 9, 73, 300, 446, 610, 615, 667
MflI RGATCY 1 cut(s) 300
MhlI GDGCHC 2 cut(s) 536, 609
MluCI AATT 2 cut(s) 166, 388
Mly113I GGCGCC 1 cut(s) 38
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 8 cut(s) 269, 391, 713, 721, 766, 783, 787, 861
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 675
MspA1I CMGCKG 4 cut(s) 350, 461, 654, 865
MspR9I CCNGG 5 cut(s) 151, 152, 404, 444, 476
MvaI CCWGG 2 cut(s) 404, 476
MvnI CGCG 3 cut(s) 236, 257, 860
MwoI GCNNNNNNNGC 2 cut(s) 201, 347
NarI GGCGCC 1 cut(s) 38
NciI CCSGG 3 cut(s) 151, 152, 444
NdeII GATC 7 cut(s) 9, 73, 300, 446, 610, 615, 667
NlaIII CATG 2 cut(s) 598, 674
NlaIV GGNNCC 3 cut(s) 39, 607, 649
NmuCI GTSAC 1 cut(s) 680
NruI TCGCGA 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 866
PcsI WCGNNNNNNNCGW 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 439
PflMI CCANNNNNTGG 2 cut(s) 67, 481
PfoI TCCNGGA 1 cut(s) 442
PkrI GCNGC 8 cut(s) 291, 308, 349, 463, 466, 633, 825, 864
PleI GAGTC 1 cut(s) 425
PluTI GGCGCC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 425
PpuMI RGGWCCY 1 cut(s) 400
Psp124BI GAGCTC 1 cut(s) 536
Psp5II RGGWCCY 1 cut(s) 400
Psp6I CCWGG 2 cut(s) 402, 474
PspGI CCWGG 2 cut(s) 402, 474
PspN4I GGNNCC 3 cut(s) 39, 607, 649
PspOMI GGGCCC 1 cut(s) 605
PspPI GGNCC 5 cut(s) 400, 605, 606, 648, 821
PspPPI RGGWCCY 1 cut(s) 400
PsuI RGATCY 1 cut(s) 300
PvuII CAGCTG 1 cut(s) 654
RruI TCGCGA 1 cut(s) 257
RsaI GTAC 2 cut(s) 593, 887
RsaNI GTAC 2 cut(s) 592, 886
RseI CAYNNNNRTG 1 cut(s) 675
SacI GAGCTC 1 cut(s) 536
SapI GCTCTTC 1 cut(s) 866
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 8 cut(s) 290, 307, 348, 462, 465, 632, 824, 863
Sau3AI GATC 7 cut(s) 9, 73, 300, 446, 610, 615, 667
Sau96I GGNCC 5 cut(s) 400, 605, 606, 648, 821
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 5 cut(s) 151, 152, 404, 444, 476
SduI GDGCHC 2 cut(s) 536, 609
SfoI GGCGCC 1 cut(s) 39
SinI GGWCC 2 cut(s) 400, 648
SmaI CCCGGG 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 675
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 2 cut(s) 166, 388
SspDI GGCGCC 1 cut(s) 37
SstI GAGCTC 1 cut(s) 536
StyD4I CCNGG 5 cut(s) 149, 150, 402, 442, 474
TaaI ACNGT 3 cut(s) 139, 686, 741
TaiI ACGT 3 cut(s) 59, 93, 422
TaqI TCGA 1 cut(s) 434
TasI AATT 2 cut(s) 166, 388
TatI WGTACW 2 cut(s) 591, 885
TauI GCSGC 6 cut(s) 309, 464, 467, 634, 826, 865
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 566, 691
TseFI GTSAC 1 cut(s) 680
TseI GCWGC 2 cut(s) 289, 347
Tsp45I GTSAC 1 cut(s) 680
TspDTI ATGAA 3 cut(s) 65, 611, 854
TspMI CCCGGG 1 cut(s) 150
TspRI CASTG 2 cut(s) 566, 691
Van91I CCANNNNNTGG 2 cut(s) 67, 481
VpaK11BI GGWCC 2 cut(s) 400, 648
XmaI CCCGGG 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.