Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013192

Physical Location & Seq

Genomic Coordinates Reverse (-)

14913458 .. 14916213

Gene Structure 2756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1171800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCGCAAAGGTCCGTTCCGGCGCCTTTTCTGACGAAGACGTATCTACTGGTGGATGATCCGAGCTTGGACGACGTGATATCATGGAATGAAAGTGGGACGACGTTTGTGGTTTGGAAGACTCTGGATTTTGCAAGGGACTTGTTGCCTAAATATTTCAAGCACAACAATTTCTCAAGCTTCGTCCGCCAGCTCAATACCTATGGATTTCGAAAGACCGTGCCGGACAAATGGGAGTTCGCGAACGAGAATTTCCAGCGAGGGCAGAAGGAGCTTCTGTCCGAGATTCGCCGTCGAAAACCGGTGACATCAACGGCGGCGCAGGCAGCGCTAGATGAAAAATCCGGAGGGCCATCGACACCGTCGAACTCAGGGGAGGAGCTGGCGTCGACGTCGACGTCGTCGCCGGACTCGAAGAATCCGGGGTCGGTGGAGACGGCGACGCTGAGCCAGGTGGTGAATTTATCGGATGAGAACAAGAAGCTGAAGCGGGAGAACGAGAATCTGAACTCGGAGTTGGCGCAGACAAAGAAGCAGTGCAACGAGCTGGTGGGGTTTCTGGTGAAGTACGTAAAGATGGGGCCCGAACAGATCAACCGCATCATTGGGCGTGGAAGCTATGGGCCCACCTGCGATGATTTTGAACTGAACAATCGTGGTCTTGGTCTTAATATGGACGGTGGCGATGATGACGAAGAAGAAAAGGAAGGACTGAAGTTGTTTGGGGTTTGGGTGAAAGGGGACGAGAAAATGAAGGGGAAGAAAACGGGGCGAGATGAGAAATTGGGGGTTAGTGGTATCAGCGGTGTTCCTCGCACGAAGAGGATGAAGGGCGGTGTGGATTTTCACGCGCCGATGATGAGGAGTGGGAAGGTGTGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

295

Amino Acids

32.67

Weight (kDa)

8.58

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	10 - 99	1.9e-30	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36990
fragaria_vesca	FvH4_1g16030
malus_domestica	MD02G1171800.v1.1 MD15G1283700.v1.1
prunus_persica	Prupe.7G133600_v2.0.a1
pyrus_communis	pycom02g13850 pycom15g24670
rosa_chinensis	RchiOBHm_Chr2g0105601
rosa_laevigata	RLG00000017444
rosa_multiflora	Rmu_co8474487.1_g000001 Rmu_sc0001051.1_g000029
rosa_roxburghii	Rroxscaffold_2G00138040
rosa_rugosa	Rorug02G0129000
rosa_samantha	Rh2AG180500 Rh2BG189300 Rh2CG184700 Rh2DG186200
rosa_wichuraiana	Rw2G014110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	638
AasI	GACNNNNNNGTC	1 cut(s)	397
AatII	GACGTC	2 cut(s)	395, 401
Acc36I	ACCTGC	1 cut(s)	638
AccB1I	GGYRCC	1 cut(s)	22
AccI	GTMKAC	2 cut(s)	389, 395
AccII	CGCG	2 cut(s)	242, 851
AccIII	TCCGGA	1 cut(s)	344
AciI	CCGC	6 cut(s)	187, 317, 490, 598, 804, 834
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	250, 460
AcuI	CTGAAG	2 cut(s)	506, 734
AcyI	GRCGYC	4 cut(s)	23, 386, 392, 398
AfaI	GTAC	1 cut(s)	569
AfeI	AGCGCT	1 cut(s)	330
AgeI	ACCGGT	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	160, 644
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	450
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AluBI	AGCT	8 cut(s)	66, 180, 193, 274, 382, 484, 547, 618
AluI	AGCT	8 cut(s)	66, 180, 193, 274, 382, 484, 547, 618
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	53
Aor13HI	TCCGGA	1 cut(s)	344
Aor51HI	AGCGCT	1 cut(s)	330
AoxI	GGCC	3 cut(s)	350, 581, 623
ApaI	GGGCCC	2 cut(s)	585, 627
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	2 cut(s)	250, 460
AsiGI	ACCGGT	1 cut(s)	301
AspLEI	GCGC	6 cut(s)	7, 25, 322, 331, 523, 853
AspS9I	GGNCC	6 cut(s)	12, 350, 581, 582, 623, 624
AsuC2I	CCSGG	1 cut(s)	423
AsuHPI	GGTGA	4 cut(s)	316, 469, 574, 745
AsuII	TTCGAA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	12
BaeGI	GKGCMC	2 cut(s)	585, 627
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	2 cut(s)	585, 627
BbsI	GAAGAC	2 cut(s)	44, 125
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	2 cut(s)	361, 571
BceAI	ACGGC	3 cut(s)	276, 330, 453
BciT130I	CCWGG	1 cut(s)	452
BcnI	CCSGG	1 cut(s)	423
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	2 cut(s)	332, 883
BfoI	RGCGCY	2 cut(s)	26, 332
BfuAI	ACCTGC	1 cut(s)	638
BisI	GCNGC	2 cut(s)	318, 327
BlpI	GCTNAGC	1 cut(s)	446
BlsI	GCNGC	2 cut(s)	319, 328
Bme1390I	CCNGG	2 cut(s)	423, 452
Bme18I	GGWCC	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	6 cut(s)	12, 350, 581, 582, 623, 624
BmiI	GGNNCC	4 cut(s)	24, 582, 583, 625
BmrFI	CCNGG	2 cut(s)	423, 452
BmsI	GCATC	1 cut(s)	609
BpiI	GAAGAC	2 cut(s)	44, 125
Bpu1102I	GCTNAGC	1 cut(s)	446
Bpu14I	TTCGAA	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	423
BsaAI	YACGTR	1 cut(s)	571
BsaHI	GRCGYC	4 cut(s)	23, 386, 392, 398
BsaJI	CCNNGG	1 cut(s)	422
BsaWI	WCCGGW	2 cut(s)	301, 344
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 371, 401
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	54
BseAI	TCCGGA	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	3 cut(s)	61, 475, 831
BseMII	CTCAG	2 cut(s)	384, 437
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	2 cut(s)	392, 877
BseSI	GKGCMC	2 cut(s)	585, 627
BseXI	GCAGC	1 cut(s)	338
Bsh1236I	CGCG	2 cut(s)	242, 851
BshFI	GGCC	3 cut(s)	352, 583, 625
BshNI	GGYRCC	1 cut(s)	22
BshTI	ACCGGT	1 cut(s)	301
BsiSI	CCGG	6 cut(s)	20, 224, 302, 345, 407, 422
BslFI	GGGAC	3 cut(s)	112, 152, 755
BsmAI	GTCTC	1 cut(s)	428
BsmBI	CGTCTC	1 cut(s)	428
BsmFI	GGGAC	3 cut(s)	112, 152, 755
BsnI	GGCC	3 cut(s)	352, 583, 625
Bsp119I	TTCGAA	1 cut(s)	211
Bsp120I	GGGCCC	2 cut(s)	581, 623
Bsp1286I	GDGCHC	2 cut(s)	585, 627
Bsp13I	TCCGGA	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	58, 591
Bsp1720I	GCTNAGC	1 cut(s)	446
Bsp68I	TCGCGA	1 cut(s)	242
BspACI	CCGC	6 cut(s)	187, 317, 490, 598, 804, 834
BspANI	GGCC	3 cut(s)	352, 583, 625
BspCNI	CTCAG	2 cut(s)	383, 438
BspEI	TCCGGA	1 cut(s)	344
BspFNI	CGCG	2 cut(s)	242, 851
BspLI	GGNNCC	4 cut(s)	24, 582, 583, 625
BspMI	ACCTGC	1 cut(s)	638
BspPI	GGATC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	54
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	2 cut(s)	58, 591
BssNI	GRCGYC	4 cut(s)	23, 386, 392, 398
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	3 cut(s)	220, 363, 680
Bst6I	CTCTTC	1 cut(s)	815
BstACI	GRCGYC	4 cut(s)	23, 386, 392, 398
BstBAI	YACGTR	1 cut(s)	571
BstBI	TTCGAA	1 cut(s)	211
BstC8I	GCNNGC	3 cut(s)	191, 324, 384
BstDEI	CTNAG	2 cut(s)	370, 446
BstF5I	GGATG	3 cut(s)	61, 475, 831
BstFNI	CGCG	2 cut(s)	242, 851
BstH2I	RGCGCY	2 cut(s)	26, 332
BstHHI	GCGC	6 cut(s)	7, 25, 322, 331, 523, 853
BstKTI	GATC	2 cut(s)	61, 594
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	2 cut(s)	58, 591
BstMWI	GCNNNNNNNGC	5 cut(s)	186, 271, 323, 326, 328
BstNI	CCWGG	1 cut(s)	452
BstSCI	CCNGG	2 cut(s)	421, 450
BstSLI	GKGCMC	2 cut(s)	585, 627
BstSNI	TACGTA	1 cut(s)	571
BstUI	CGCG	2 cut(s)	242, 851
BstV1I	GCAGC	1 cut(s)	338
BstV2I	GAAGAC	2 cut(s)	44, 125
BsuRI	GGCC	3 cut(s)	352, 583, 625
BtgZI	GCGATG	2 cut(s)	648, 699
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	3 cut(s)	61, 475, 831
BtsI	GCAGTG	1 cut(s)	542
BtsIMutI	CAGTG	1 cut(s)	542
BtuMI	TCGCGA	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	638
Cac8I	GCNNGC	3 cut(s)	191, 324, 384
CfoI	GCGC	6 cut(s)	7, 25, 322, 331, 523, 853
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	6 cut(s)	12, 350, 581, 582, 623, 624
CseI	GACGC	2 cut(s)	375, 451
Csp6I	GTAC	1 cut(s)	568
CspAI	ACCGGT	1 cut(s)	301
CviAII	CATG	1 cut(s)	84
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	2 cut(s)	370, 446
DinI	GGCGCC	1 cut(s)	24
DpnI	GATC	2 cut(s)	60, 593
DpnII	GATC	2 cut(s)	58, 591
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	815
EarI	CTCTTC	1 cut(s)	815
EciI	GGCGGA	1 cut(s)	176
Eco105I	TACGTA	1 cut(s)	571
Eco24I	GRGCYC	2 cut(s)	585, 627
Eco32I	GATATC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	12
Eco47III	AGCGCT	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	506, 734
EcoO109I	RGGNCCY	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	450
EcoRV	GATATC	1 cut(s)	81
EcoT38I	GRGCYC	2 cut(s)	585, 627
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	428
FaeI	CATG	1 cut(s)	87
FaiI	YATR	4 cut(s)	85, 204, 621, 674
FaqI	GGGAC	3 cut(s)	112, 152, 755
FatI	CATG	1 cut(s)	83
FauI	CCCGC	1 cut(s)	483
FblI	GTMKAC	2 cut(s)	389, 395
Fnu4HI	GCNGC	2 cut(s)	318, 327
FokI	GGATG	3 cut(s)	68, 482, 838
FriOI	GRGCYC	2 cut(s)	585, 627
Fsp4HI	GCNGC	2 cut(s)	318, 327
FspBI	CTAG	2 cut(s)	332, 883
GlaI	GCGC	6 cut(s)	6, 24, 321, 330, 522, 852
GluI	GCNGC	2 cut(s)	318, 327
HaeII	RGCGCY	2 cut(s)	26, 332
HaeIII	GGCC	3 cut(s)	352, 583, 625
HapII	CCGG	6 cut(s)	20, 224, 302, 345, 407, 422
HgaI	GACGC	2 cut(s)	375, 451
HhaI	GCGC	6 cut(s)	7, 25, 322, 331, 523, 853
Hin1I	GRCGYC	4 cut(s)	23, 386, 392, 398
Hin1II	CATG	1 cut(s)	87
Hin6I	GCGC	6 cut(s)	5, 23, 320, 329, 521, 851
HinP1I	GCGC	6 cut(s)	5, 23, 320, 329, 521, 851
HincII	GTYRAC	2 cut(s)	390, 396
HindII	GTYRAC	2 cut(s)	390, 396
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	5 cut(s)	121, 286, 410, 418, 502
HpaII	CCGG	6 cut(s)	20, 224, 302, 345, 407, 422
HphI	GGTGA	4 cut(s)	316, 469, 574, 745
Hpy166II	GTNNAC	2 cut(s)	390, 396
Hpy188I	TCNGA	6 cut(s)	33, 63, 283, 469, 507, 514
Hpy188III	TCNNGA	3 cut(s)	125, 241, 345
Hpy8I	GTNNAC	2 cut(s)	390, 396
HpyAV	CCTTC	5 cut(s)	262, 701, 748, 823, 865
HpyCH4III	ACNGT	3 cut(s)	220, 363, 680
HpyCH4IV	ACGT	6 cut(s)	41, 75, 104, 392, 398, 570
HpyCH4V	TGCA	2 cut(s)	134, 540
HpyF10VI	GCNNNNNNNGC	5 cut(s)	186, 271, 323, 326, 328
HpyF3I	CTNAG	2 cut(s)	370, 446
HpySE526I	ACGT	6 cut(s)	41, 75, 104, 392, 398, 570
Hsp92I	GRCGYC	4 cut(s)	23, 386, 392, 398
Hsp92II	CATG	1 cut(s)	87
HspAI	GCGC	6 cut(s)	5, 23, 320, 329, 521, 851
KasI	GGCGCC	1 cut(s)	22
Kpn2I	TCCGGA	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	58, 591
LmnI	GCTCC	2 cut(s)	271, 379
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	1 cut(s)	609
MaeI	CTAG	2 cut(s)	332, 883
MaeII	ACGT	6 cut(s)	41, 75, 104, 392, 398, 570
MaeIII	GTNAC	2 cut(s)	304, 878
MalI	GATC	2 cut(s)	60, 593
MboI	GATC	2 cut(s)	58, 591
MboII	GAAGA	7 cut(s)	49, 130, 427, 707, 710, 772, 832
MhlI	GDGCHC	2 cut(s)	585, 627
MluCI	AATT	4 cut(s)	169, 250, 460, 782
Mly113I	GGCGCC	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	115, 404
MnlI	CCTC	6 cut(s)	254, 341, 370, 816, 822, 855
MroI	TCCGGA	1 cut(s)	344
MseI	TTAA	1 cut(s)	669
MspA1I	CMGCKG	1 cut(s)	804
MspI	CCGG	6 cut(s)	20, 224, 302, 345, 407, 422
MspR9I	CCNGG	2 cut(s)	423, 452
MvaI	CCWGG	1 cut(s)	452
MvnI	CGCG	2 cut(s)	242, 851
MwoI	GCNNNNNNNGC	5 cut(s)	186, 271, 323, 326, 328
NarI	GGCGCC	1 cut(s)	23
NciI	CCSGG	1 cut(s)	423
NdeII	GATC	2 cut(s)	58, 591
NlaIII	CATG	1 cut(s)	87
NlaIV	GGNNCC	4 cut(s)	24, 582, 583, 625
NmuCI	GTSAC	1 cut(s)	304
NruI	TCGCGA	1 cut(s)	242
NspV	TTCGAA	1 cut(s)	211
PaqCI	CACCTGC	1 cut(s)	638
PcsI	WCGNNNNNNNCGW	4 cut(s)	362, 395, 398, 410
PfeI	GAWTC	3 cut(s)	286, 418, 502
PflFI	GACNNNGTC	2 cut(s)	361, 400
PinAI	ACCGGT	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	319, 328
PleI	GAGTC	2 cut(s)	115, 404
PluTI	GGCGCC	1 cut(s)	26
PpsI	GAGTC	2 cut(s)	115, 404
Ppu21I	YACGTR	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	4 cut(s)	24, 582, 583, 625
PspOMI	GGGCCC	2 cut(s)	581, 623
PspPI	GGNCC	6 cut(s)	12, 350, 581, 582, 623, 624
PsyI	GACNNNGTC	2 cut(s)	361, 400
RruI	TCGCGA	1 cut(s)	242
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SalI	GTCGAC	2 cut(s)	388, 394
SaqAI	TTAA	1 cut(s)	669
SatI	GCNGC	2 cut(s)	318, 327
Sau3AI	GATC	2 cut(s)	58, 591
Sau96I	GGNCC	6 cut(s)	12, 350, 581, 582, 623, 624
SchI	GAGTC	2 cut(s)	115, 404
ScrFI	CCNGG	2 cut(s)	423, 452
SduI	GDGCHC	2 cut(s)	585, 627
SfaNI	GCATC	1 cut(s)	609
SfoI	GGCGCC	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	211
SgrDI	CGTCGACG	2 cut(s)	388, 394
SinI	GGWCC	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
SnaBI	TACGTA	1 cut(s)	571
Sse9I	AATT	4 cut(s)	169, 250, 460, 782
SsiI	CCGC	6 cut(s)	187, 317, 490, 598, 804, 834
SspDI	GGCGCC	1 cut(s)	22
SspI	AATATT	1 cut(s)	155
SspMI	CTAG	2 cut(s)	332, 883
StyD4I	CCNGG	2 cut(s)	421, 450
TaaI	ACNGT	3 cut(s)	220, 363, 680
TaiI	ACGT	6 cut(s)	44, 78, 107, 395, 401, 573
TaqI	TCGA	7 cut(s)	211, 295, 356, 365, 389, 395, 413
TasI	AATT	4 cut(s)	169, 250, 460, 782
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	3 cut(s)	286, 418, 502
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	1 cut(s)	542
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	4 cut(s)	105, 351, 767, 842
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	542
Tth111I	GACNNNGTC	2 cut(s)	361, 400
VpaK11BI	GGWCC	1 cut(s)	12
XapI	RAATTY	2 cut(s)	250, 460
XmiI	GTMKAC	2 cut(s)	389, 395
XspI	CTAG	2 cut(s)	332, 883
ZraI	GACGTC	2 cut(s)	393, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.