Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013192

Physical Location & Seq

Genomic Coordinates Forward (+)

11122723 .. 11125923

Gene Structure 3201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0129000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGATATTTGTTTTTCTGGGCTTTGCGCACTAACATAAATAGCAGATTGTTCACTGTTGAAGAATTGGCTTTGTACAATGGGACTGATCAAAGTTTGCCAATCTTGTTAGTAATTCTCCGGTTGGTTTTTGATGTGACGAAAGGAAAGTCTCATTACGGTGAGGGTGGGGTCGAAAAGAATGTTGTAGATAAAAAGATTGCATTGCATACTGGTATAAGTGAGAAGGATCAATCATGGAAGGTACTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACAAGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAATTGGAAGTGAATATATTATTGATCTGATGGGTGCTCCTGGAACACTAATTCATGCTGAGAAAACCCTAAGGAGGCTTCAGAACCTTGAAAATATTCTCGTCCGGCGGCGCCCGGTCGCCGGGGGGTCTCCAGCCACACCGCCACCATGGGTTTGCTGCTGGACGGGAGGTCTAAATGCTCAATGGGATTGTCGGAGGGAATTTGCTCGGGTTTTGTCACCAGTTCGGCTGGGTTTGTTCAATGGGGTGTTCGTGGCTTTACGGATCCGGTCGTCGATCCTCGCTGCGATGGTGTTCGATGGGGTGCCCTGGATTTCGATTCGACGGCGGGGTACGGTCACGGGCCTGGAACAGCGTTGGGTTTCTGTGCTTGATGCATCTCGTGGCGGCGTTGACTTGGGACGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

251

Amino Acids

27.81

Weight (kDa)

9.48

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EDR1_CTR1_ARMC3_pept	PF14381	80 - 132	1.9e-17	EDR1/CTR1/ARMC3, peptidase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36990
fragaria_vesca	FvH4_1g16030
malus_domestica	MD02G1171800.v1.1 MD15G1283700.v1.1
prunus_persica	Prupe.7G133600_v2.0.a1
pyrus_communis	pycom02g13850 pycom15g24670
rosa_chinensis	RchiOBHm_Chr2g0105601
rosa_laevigata	RLG00000017444
rosa_multiflora	Rmu_co8474487.1_g000001 Rmu_sc0001051.1_g000029
rosa_roxburghii	Rroxscaffold_2G00138040
rosa_rugosa	Rorug02G0129000
rosa_samantha	Rh2AG180500 Rh2BG189300 Rh2CG184700 Rh2DG186200
rosa_wichuraiana	Rw2G014110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	29
AccB1I	GGYRCC	2 cut(s)	453, 649
AciI	CCGC	4 cut(s)	451, 485, 673, 732
AclWI	GGATC	4 cut(s)	237, 604, 616, 617
AcsI	RAATTY	1 cut(s)	545
AcuI	CTGAAG	1 cut(s)	407
AcyI	GRCGYC	1 cut(s)	454
AfaI	GTAC	4 cut(s)	77, 246, 304, 679
AfiI	CCNNNNNNNGG	2 cut(s)	417, 464
AgsI	TTSAA	3 cut(s)	62, 434, 586
AhdI	GACNNNNNGTC	1 cut(s)	513
AjnI	CCWGG	3 cut(s)	382, 653, 690
AluBI	AGCT	3 cut(s)	251, 291, 317
AluI	AGCT	3 cut(s)	251, 291, 317
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	2 cut(s)	156, 477
AlwI	GGATC	4 cut(s)	237, 604, 616, 617
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	1 cut(s)	688
ApeKI	GCWGC	2 cut(s)	501, 629
ApoI	RAATTY	1 cut(s)	545
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	2 cut(s)	30, 456
AspS9I	GGNCC	1 cut(s)	688
AsuC2I	CCSGG	2 cut(s)	458, 466
AsuHPI	GGTGA	2 cut(s)	173, 555
AvaI	CYCGRG	1 cut(s)	552
AxyI	CCTNAGG	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	654
BamHI	GGATCC	1 cut(s)	609
BanI	GGYRCC	2 cut(s)	453, 649
BauI	CACGAG	1 cut(s)	726
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	2 cut(s)	488, 616
BccI	CCATC	4 cut(s)	305, 367, 628, 638
BceAI	ACGGC	1 cut(s)	686
BciT130I	CCWGG	3 cut(s)	384, 655, 692
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	2 cut(s)	458, 466
BcoDI	GTCTC	2 cut(s)	156, 477
BfaI	CTAG	1 cut(s)	248
BfoI	RGCGCY	1 cut(s)	457
BisI	GCNGC	4 cut(s)	452, 502, 630, 733
BlsI	GCNGC	4 cut(s)	453, 503, 631, 734
BmcAI	AGTACT	1 cut(s)	304
Bme1390I	CCNGG	5 cut(s)	384, 458, 466, 655, 692
BmeRI	GACNNNNNGTC	1 cut(s)	513
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	688
BmiI	GGNNCC	3 cut(s)	455, 611, 651
BmrFI	CCNGG	5 cut(s)	384, 458, 466, 655, 692
BmsI	GCATC	2 cut(s)	709, 731
BpmI	CTGGAG	1 cut(s)	459
BpuMI	CCSGG	2 cut(s)	458, 466
BsaHI	GRCGYC	1 cut(s)	454
BsaI	GGTCTC	1 cut(s)	477
BsaJI	CCNNGG	3 cut(s)	465, 491, 653
BsaWI	WCCGGW	2 cut(s)	120, 612
Bsc4I	CCNNNNNNNGG	2 cut(s)	417, 464
Bse1I	ACTGG	2 cut(s)	217, 566
Bse21I	CCTNAGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	203
BseBI	CCWGG	3 cut(s)	384, 655, 692
BseDI	CCNNGG	3 cut(s)	465, 491, 653
BseLI	CCNNNNNNNGG	2 cut(s)	417, 464
BseMI	GCAATG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	217, 566
BseSI	GKGCMC	1 cut(s)	654
BseXI	GCAGC	2 cut(s)	488, 616
BseYI	CCCAGC	1 cut(s)	574
Bsh1285I	CGRYCG	2 cut(s)	462, 617
BshFI	GGCC	1 cut(s)	690
BshNI	GGYRCC	2 cut(s)	453, 649
BsiEI	CGRYCG	2 cut(s)	462, 617
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	5 cut(s)	121, 448, 458, 465, 613
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	417, 464
BsmAI	GTCTC	2 cut(s)	156, 477
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	690
Bso31I	GGTCTC	1 cut(s)	477
BsoBI	CYCGRG	1 cut(s)	552
Bsp1286I	GDGCHC	2 cut(s)	382, 654
Bsp1407I	TGTACA	1 cut(s)	75
Bsp143I	GATC	5 cut(s)	88, 229, 367, 609, 621
Bsp19I	CCATGG	1 cut(s)	491
BspACI	CCGC	4 cut(s)	451, 485, 673, 732
BspANI	GGCC	1 cut(s)	690
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	3 cut(s)	455, 611, 651
BspPI	GGATC	4 cut(s)	237, 604, 616, 617
BspT107I	GGYRCC	2 cut(s)	453, 649
BspTNI	GGTCTC	1 cut(s)	477
BsrDI	GCAATG	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	217, 566
BssECI	CCNNGG	3 cut(s)	465, 491, 653
BssMI	GATC	5 cut(s)	88, 229, 367, 609, 621
BssNI	GRCGYC	1 cut(s)	454
BssSI	CACGAG	1 cut(s)	726
BssT1I	CCWWGG	1 cut(s)	491
Bst2BI	CACGAG	1 cut(s)	726
Bst2UI	CCWGG	3 cut(s)	384, 655, 692
Bst4CI	ACNGT	3 cut(s)	58, 161, 682
BstACI	GRCGYC	1 cut(s)	454
BstAUI	TGTACA	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	402, 413
BstDSI	CCRYGG	1 cut(s)	491
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	2 cut(s)	30, 456
BstKTI	GATC	5 cut(s)	91, 232, 370, 612, 624
BstMAI	GTCTC	2 cut(s)	156, 477
BstMBI	GATC	5 cut(s)	88, 229, 367, 609, 621
BstMCI	CGRYCG	2 cut(s)	462, 617
BstNI	CCWGG	3 cut(s)	384, 655, 692
BstSCI	CCNGG	5 cut(s)	382, 456, 464, 653, 690
BstSLI	GKGCMC	1 cut(s)	654
BstV1I	GCAGC	2 cut(s)	488, 616
BstX2I	RGATCY	1 cut(s)	609
BstYI	RGATCY	1 cut(s)	609
Bsu36I	CCTNAGG	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	690
BtgI	CCRYGG	1 cut(s)	491
BtgZI	GCGATG	1 cut(s)	647
BtsIMutI	CAGTG	1 cut(s)	54
CfoI	GCGC	2 cut(s)	30, 456
Cfr13I	GGNCC	1 cut(s)	688
Csp6I	GTAC	4 cut(s)	76, 245, 303, 678
CviAII	CATG	4 cut(s)	237, 270, 398, 492
CviQI	GTAC	4 cut(s)	76, 245, 303, 678
DdeI	CTNAG	2 cut(s)	402, 413
DinI	GGCGCC	1 cut(s)	455
DpnI	GATC	5 cut(s)	90, 231, 369, 611, 623
DpnII	GATC	5 cut(s)	88, 229, 367, 609, 621
DriI	GACNNNNNGTC	1 cut(s)	513
Eam1105I	GACNNNNNGTC	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	491
Eco31I	GGTCTC	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	407
Eco81I	CCTNAGG	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	552
EcoRII	CCWGG	3 cut(s)	382, 653, 690
EcoT14I	CCWWGG	1 cut(s)	491
EcoT22I	ATGCAT	1 cut(s)	724
EgeI	GGCGCC	1 cut(s)	455
EheI	GGCGCC	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	4 cut(s)	240, 273, 401, 495
FaiI	YATR	9 cut(s)	38, 210, 218, 238, 271, 275, 360, 399, 493
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	4 cut(s)	236, 269, 397, 491
FauI	CCCGC	1 cut(s)	666
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	4 cut(s)	452, 502, 630, 733
Fsp4HI	GCNGC	4 cut(s)	452, 502, 630, 733
FspBI	CTAG	1 cut(s)	248
FspI	TGCGCA	1 cut(s)	29
GlaI	GCGC	2 cut(s)	29, 455
GluI	GCNGC	4 cut(s)	452, 502, 630, 733
GsaI	CCCAGC	1 cut(s)	578
GsuI	CTGGAG	1 cut(s)	459
HaeII	RGCGCY	1 cut(s)	457
HaeIII	GGCC	1 cut(s)	690
HapII	CCGG	5 cut(s)	121, 448, 458, 465, 613
HhaI	GCGC	2 cut(s)	30, 456
Hin1I	GRCGYC	1 cut(s)	454
Hin1II	CATG	4 cut(s)	240, 273, 401, 495
Hin6I	GCGC	2 cut(s)	28, 454
HinP1I	GCGC	2 cut(s)	28, 454
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HinfI	GANTC	1 cut(s)	664
HpaII	CCGG	5 cut(s)	121, 448, 458, 465, 613
HphI	GGTGA	2 cut(s)	173, 555
Hpy166II	GTNNAC	3 cut(s)	54, 322, 739
Hpy188I	TCNGA	3 cut(s)	372, 426, 540
Hpy8I	GTNNAC	3 cut(s)	54, 322, 739
Hpy99I	CGWCG	2 cut(s)	622, 672
HpyAV	CCTTC	2 cut(s)	220, 235
HpyCH4III	ACNGT	3 cut(s)	58, 161, 682
HpyCH4V	TGCA	3 cut(s)	203, 208, 722
HpyF3I	CTNAG	2 cut(s)	402, 413
Hsp92I	GRCGYC	1 cut(s)	454
Hsp92II	CATG	4 cut(s)	240, 273, 401, 495
HspAI	GCGC	2 cut(s)	28, 454
KasI	GGCGCC	1 cut(s)	453
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	88, 229, 367, 609, 621
LmnI	GCTCC	2 cut(s)	314, 385
Lsp1109I	GCAGC	2 cut(s)	488, 616
LweI	GCATC	2 cut(s)	709, 731
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	3 cut(s)	136, 561, 682
MalI	GATC	5 cut(s)	90, 231, 369, 611, 623
MboI	GATC	5 cut(s)	88, 229, 367, 609, 621
MboII	GAAGA	2 cut(s)	74, 257
MflI	RGATCY	1 cut(s)	609
MhlI	GDGCHC	2 cut(s)	382, 654
MluCI	AATT	6 cut(s)	65, 114, 333, 345, 393, 545
Mly113I	GGCGCC	1 cut(s)	454
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	5 cut(s)	157, 411, 506, 534, 635
Mph1103I	ATGCAT	1 cut(s)	724
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	159
MspI	CCGG	5 cut(s)	121, 448, 458, 465, 613
MspR9I	CCNGG	5 cut(s)	384, 458, 466, 655, 692
MvaI	CCWGG	3 cut(s)	384, 655, 692
NarI	GGCGCC	1 cut(s)	454
NciI	CCSGG	2 cut(s)	458, 466
NcoI	CCATGG	1 cut(s)	491
NdeII	GATC	5 cut(s)	88, 229, 367, 609, 621
NlaIII	CATG	4 cut(s)	240, 273, 401, 495
NlaIV	GGNNCC	3 cut(s)	455, 611, 651
NmuCI	GTSAC	3 cut(s)	136, 561, 682
NsbI	TGCGCA	1 cut(s)	29
NsiI	ATGCAT	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	664
PfoI	TCCNGGA	1 cut(s)	382
PkrI	GCNGC	4 cut(s)	453, 503, 631, 734
PluTI	GGCGCC	1 cut(s)	457
Psp6I	CCWGG	3 cut(s)	382, 653, 690
PspFI	CCCAGC	1 cut(s)	574
PspGI	CCWGG	3 cut(s)	382, 653, 690
PspN4I	GGNNCC	3 cut(s)	455, 611, 651
PspPI	GGNCC	1 cut(s)	688
PsuI	RGATCY	1 cut(s)	609
RsaI	GTAC	4 cut(s)	77, 246, 304, 679
RsaNI	GTAC	4 cut(s)	76, 245, 303, 678
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	4 cut(s)	452, 502, 630, 733
Sau3AI	GATC	5 cut(s)	88, 229, 367, 609, 621
Sau96I	GGNCC	1 cut(s)	688
ScaI	AGTACT	1 cut(s)	304
ScrFI	CCNGG	5 cut(s)	384, 458, 466, 655, 692
SduI	GDGCHC	2 cut(s)	382, 654
SetI	ASST	7 cut(s)	246, 253, 289, 293, 319, 432, 517
SfaNI	GCATC	2 cut(s)	709, 731
SfoI	GGCGCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	6 cut(s)	65, 114, 333, 345, 393, 545
SsiI	CCGC	4 cut(s)	451, 485, 673, 732
SspDI	GGCGCC	1 cut(s)	453
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	5 cut(s)	382, 456, 464, 653, 690
StyI	CCWWGG	1 cut(s)	491
TaaI	ACNGT	3 cut(s)	58, 161, 682
TaqI	TCGA	5 cut(s)	174, 620, 642, 662, 667
TasI	AATT	6 cut(s)	65, 114, 333, 345, 393, 545
TatI	WGTACW	2 cut(s)	75, 302
TauI	GCSGC	2 cut(s)	454, 735
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	3 cut(s)	136, 561, 682
TseI	GCWGC	2 cut(s)	501, 629
Tsp45I	GTSAC	3 cut(s)	136, 561, 682
TspDTI	ATGAA	1 cut(s)	386
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	304
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.