Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8474487.1

Orthogroup ID

OG0013192

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1484

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8474487.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ggctttcgaaagaccgtgccggacaaatgggagttcgcgaacgacaacttccggcgaggtgagaaggagctgctctccgagatccgtcgccgaaaatctgtgtcgtcatctcaggctcaggcaaacgcagcggaaaaatcgggcggagacgccccgtcaaccccgtccaactccggcgaggacctggcgtcaacttccacgtcttcgccggactcgaagaatccgggatcggtggagacagcggcggcggtgtgccaggcggtggacttatccggcgagaacgagaaactgaagaaagacaacgagacgctgagctcggagcttgcacaaacaaagaagcagtgtgatgagctggtggcgtttctgatggagtacatgaaggtcgggcccgatcagatcaatcagattatgcggcaaggaagcttagggtccagctgtgatgttgatgatcatggtcgtggtcacactgagaatgataatgacgaaaaagttgtggcgggaggagaagagggtttgaaactgtttggggtttggctgaaggggaacgagagcgaggagaagaagaaaaggagggagaagaaatcgggtggtggtgggccgcaagcgaagaagatgaagatggcggagtttcacgcgccgctgaggaagagcgggaaggtgtgcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

222

Amino Acids

24.07

Weight (kDa)

7.03

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36990
fragaria_vesca	FvH4_1g16030
malus_domestica	MD02G1171800.v1.1 MD15G1283700.v1.1
prunus_persica	Prupe.7G133600_v2.0.a1
pyrus_communis	pycom02g13850 pycom15g24670
rosa_chinensis	RchiOBHm_Chr2g0105601
rosa_laevigata	RLG00000017444
rosa_multiflora	Rmu_co8474487.1_g000001 Rmu_sc0001051.1_g000029
rosa_roxburghii	Rroxscaffold_2G00138040
rosa_rugosa	Rorug02G0129000
rosa_samantha	Rh2AG180500 Rh2BG189300 Rh2CG184700 Rh2DG186200
rosa_wichuraiana	Rw2G014110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccBSI	CCGCTC	1 cut(s)	651
AccII	CGCG	2 cut(s)	38, 635
AclWI	GGATC	2 cut(s)	76, 235
AcuI	CTGAAG	2 cut(s)	311, 557
AcyI	GRCGYC	2 cut(s)	150, 188
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	517
AhdI	GACNNNNNGTC	2 cut(s)	154, 187
AjiI	CACGTC	1 cut(s)	201
AjnI	CCWGG	2 cut(s)	183, 255
AluBI	AGCT	6 cut(s)	70, 315, 322, 352, 423, 435
AluI	AGCT	6 cut(s)	70, 315, 322, 352, 423, 435
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	3 cut(s)	141, 230, 299
AlwI	GGATC	2 cut(s)	76, 235
AoxI	GGCC	2 cut(s)	386, 596
ApaI	GGGCCC	1 cut(s)	390
ApeKI	GCWGC	2 cut(s)	70, 128
AspLEI	GCGC	1 cut(s)	637
AspS9I	GGNCC	5 cut(s)	181, 386, 387, 429, 596
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	7
AvaII	GGWCC	2 cut(s)	181, 429
BaeGI	GKGCMC	1 cut(s)	390
BanII	GRGCYC	2 cut(s)	317, 390
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	317
BbvCI	CCTCAGC	1 cut(s)	641
BbvI	GCAGC	2 cut(s)	57, 140
BccI	CCATC	2 cut(s)	361, 613
BciT130I	CCWGG	2 cut(s)	185, 257
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	3 cut(s)	141, 230, 299
BisI	GCNGC	7 cut(s)	71, 129, 243, 246, 413, 599, 638
BlpI	GCTNAGC	1 cut(s)	311
BlsI	GCNGC	7 cut(s)	72, 130, 244, 247, 414, 600, 639
Bme1390I	CCNGG	3 cut(s)	185, 225, 257
Bme18I	GGWCC	2 cut(s)	181, 429
BmeRI	GACNNNNNGTC	2 cut(s)	154, 187
BmgBI	CACGTC	1 cut(s)	201
BmgT120I	GGNCC	5 cut(s)	181, 386, 387, 429, 596
BmiI	GGNNCC	2 cut(s)	388, 430
BmrFI	CCNGG	3 cut(s)	185, 225, 257
BpiI	GAAGAC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
Bpu10I	CCTNAGC	3 cut(s)	117, 424, 641
Bpu1102I	GCTNAGC	1 cut(s)	311
Bpu14I	TTCGAA	1 cut(s)	7
BpuMI	CCSGG	1 cut(s)	225
BsaHI	GRCGYC	2 cut(s)	150, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
BseBI	CCWGG	2 cut(s)	185, 257
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	5 cut(s)	125, 131, 302, 459, 632
BseRI	GAGGAG	2 cut(s)	516, 569
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	2 cut(s)	57, 140
Bsh1236I	CGCG	2 cut(s)	38, 635
BshFI	GGCC	2 cut(s)	388, 598
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	6 cut(s)	20, 52, 174, 209, 224, 273
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	3 cut(s)	141, 230, 299
BsmBI	CGTCTC	2 cut(s)	141, 299
BsnI	GGCC	2 cut(s)	388, 598
Bsp119I	TTCGAA	1 cut(s)	7
Bsp120I	GGGCCC	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	317, 390
Bsp143I	GATC	5 cut(s)	81, 227, 391, 396, 448
Bsp1720I	GCTNAGC	1 cut(s)	311
Bsp68I	TCGCGA	1 cut(s)	38
BspANI	GGCC	2 cut(s)	388, 598
BspCNI	CTCAG	5 cut(s)	124, 130, 303, 460, 633
BspFNI	CGCG	2 cut(s)	38, 635
BspLI	GGNNCC	2 cut(s)	388, 430
BspPI	GGATC	2 cut(s)	76, 235
BspQI	GCTCTTC	1 cut(s)	641
BspT104I	TTCGAA	1 cut(s)	7
BsrBI	CCGCTC	1 cut(s)	651
BssMI	GATC	5 cut(s)	81, 227, 391, 396, 448
BssNI	GRCGYC	2 cut(s)	150, 188
Bst2UI	CCWGG	2 cut(s)	185, 257
Bst4CI	ACNGT	2 cut(s)	16, 522
Bst6I	CTCTTC	2 cut(s)	501, 641
BstACI	GRCGYC	2 cut(s)	150, 188
BstBI	TTCGAA	1 cut(s)	7
BstC8I	GCNNGC	2 cut(s)	324, 603
BstDEI	CTNAG	6 cut(s)	111, 117, 311, 424, 468, 641
BstFNI	CGCG	2 cut(s)	38, 635
BstHHI	GCGC	1 cut(s)	637
BstKTI	GATC	5 cut(s)	84, 230, 394, 399, 451
BstMAI	GTCTC	3 cut(s)	141, 230, 299
BstMBI	GATC	5 cut(s)	81, 227, 391, 396, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	2 cut(s)	185, 257
BstSCI	CCNGG	3 cut(s)	183, 223, 255
BstSLI	GKGCMC	1 cut(s)	390
BstUI	CGCG	2 cut(s)	38, 635
BstV1I	GCAGC	2 cut(s)	57, 140
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	388, 598
BtrI	CACGTC	1 cut(s)	201
BtsI	GCAGTG	1 cut(s)	347
BtsIMutI	CAGTG	2 cut(s)	347, 465
BtuMI	TCGCGA	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	324, 603
CfoI	GCGC	1 cut(s)	637
Cfr13I	GGNCC	5 cut(s)	181, 386, 387, 429, 596
CseI	GACGC	3 cut(s)	158, 177, 316
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	2 cut(s)	376, 452
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	6 cut(s)	111, 117, 311, 424, 468, 641
DpnI	GATC	5 cut(s)	83, 229, 393, 398, 450
DpnII	GATC	5 cut(s)	81, 227, 391, 396, 448
DriI	GACNNNNNGTC	2 cut(s)	154, 187
Eam1104I	CTCTTC	2 cut(s)	501, 641
Eam1105I	GACNNNNNGTC	2 cut(s)	154, 187
EarI	CTCTTC	2 cut(s)	501, 641
EciI	GGCGGA	2 cut(s)	159, 638
Ecl136II	GAGCTC	1 cut(s)	315
Eco24I	GRGCYC	2 cut(s)	317, 390
Eco47I	GGWCC	2 cut(s)	181, 429
Eco53kI	GAGCTC	1 cut(s)	315
Eco57I	CTGAAG	2 cut(s)	311, 557
EcoICRI	GAGCTC	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	183, 255
EcoT38I	GRGCYC	2 cut(s)	317, 390
Esp3I	CGTCTC	2 cut(s)	141, 299
FaeI	CATG	2 cut(s)	379, 455
FaiI	YATR	3 cut(s)	377, 410, 453
FatI	CATG	2 cut(s)	375, 451
FauI	CCCGC	2 cut(s)	490, 644
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	7 cut(s)	71, 129, 243, 246, 413, 599, 638
FriOI	GRGCYC	2 cut(s)	317, 390
Fsp4HI	GCNGC	7 cut(s)	71, 129, 243, 246, 413, 599, 638
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	7 cut(s)	71, 129, 243, 246, 413, 599, 638
HaeIII	GGCC	2 cut(s)	388, 598
HapII	CCGG	6 cut(s)	20, 52, 174, 209, 224, 273
HgaI	GACGC	3 cut(s)	158, 177, 316
HhaI	GCGC	1 cut(s)	637
Hin1I	GRCGYC	2 cut(s)	150, 188
Hin1II	CATG	2 cut(s)	379, 455
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HincII	GTYRAC	2 cut(s)	159, 192
HindII	GTYRAC	2 cut(s)	159, 192
HindIII	AAGCTT	1 cut(s)	421
HinfI	GANTC	2 cut(s)	212, 220
HpaII	CCGG	6 cut(s)	20, 52, 174, 209, 224, 273
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	3 cut(s)	159, 192, 265
Hpy188I	TCNGA	5 cut(s)	79, 319, 366, 396, 405
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	3 cut(s)	159, 192, 265
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	4 cut(s)	58, 373, 532, 649
HpyCH4III	ACNGT	2 cut(s)	16, 522
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	326, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	6 cut(s)	111, 117, 311, 424, 468, 641
HpySE526I	ACGT	1 cut(s)	200
Hsp92I	GRCGYC	2 cut(s)	150, 188
Hsp92II	CATG	2 cut(s)	379, 455
HspAI	GCGC	1 cut(s)	635
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	5 cut(s)	81, 227, 391, 396, 448
LguI	GCTCTTC	1 cut(s)	641
LmnI	GCTCC	2 cut(s)	67, 319
Lsp1109I	GCAGC	2 cut(s)	57, 140
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	5 cut(s)	83, 229, 393, 398, 450
MbiI	CCGCTC	1 cut(s)	651
MboI	GATC	5 cut(s)	81, 227, 391, 396, 448
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	317, 390
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	7 cut(s)	50, 172, 494, 502, 547, 564, 636
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	4 cut(s)	131, 242, 435, 640
MspI	CCGG	6 cut(s)	20, 52, 174, 209, 224, 273
MspR9I	CCNGG	3 cut(s)	185, 225, 257
MvaI	CCWGG	2 cut(s)	185, 257
MvnI	CGCG	2 cut(s)	38, 635
MwoI	GCNNNNNNNGC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	5 cut(s)	81, 227, 391, 396, 448
NlaIII	CATG	2 cut(s)	379, 455
NlaIV	GGNNCC	2 cut(s)	388, 430
NmuCI	GTSAC	1 cut(s)	461
NruI	TCGCGA	1 cut(s)	38
NspV	TTCGAA	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	262
PfoI	TCCNGGA	1 cut(s)	223
PkrI	GCNGC	7 cut(s)	72, 130, 244, 247, 414, 600, 639
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PpuMI	RGGWCCY	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	183, 255
PspGI	CCWGG	2 cut(s)	183, 255
PspN4I	GGNNCC	2 cut(s)	388, 430
PspOMI	GGGCCC	1 cut(s)	386
PspPI	GGNCC	5 cut(s)	181, 386, 387, 429, 596
PspPPI	RGGWCCY	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	435
RruI	TCGCGA	1 cut(s)	38
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	456
SacI	GAGCTC	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	641
SatI	GCNGC	7 cut(s)	71, 129, 243, 246, 413, 599, 638
Sau3AI	GATC	5 cut(s)	81, 227, 391, 396, 448
Sau96I	GGNCC	5 cut(s)	181, 386, 387, 429, 596
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	3 cut(s)	185, 225, 257
SduI	GDGCHC	2 cut(s)	317, 390
SfuI	TTCGAA	1 cut(s)	7
SinI	GGWCC	2 cut(s)	181, 429
SmiMI	CAYNNNNRTG	1 cut(s)	456
SstI	GAGCTC	1 cut(s)	317
StyD4I	CCNGG	3 cut(s)	183, 223, 255
TaaI	ACNGT	2 cut(s)	16, 522
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	2 cut(s)	7, 215
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	5 cut(s)	245, 248, 415, 601, 640
TfiI	GAWTC	1 cut(s)	220
TscAI	CASTG	2 cut(s)	347, 472
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	2 cut(s)	70, 128
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	2 cut(s)	392, 629
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	2 cut(s)	347, 472
Van91I	CCANNNNNTGG	1 cut(s)	262
VpaK11BI	GGWCC	2 cut(s)	181, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.