Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013192

Physical Location & Seq

Genomic Coordinates Reverse (-)

18894790 .. 18896581

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g24670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTTACCTAAATATTTCAAGCACAACAATTTCTCAAGCTTCGTCCGCCAGCTTAATACCTATGGATTTCGAAAGACCGTGCCGGACAAATGGGAGTTCGCGAACGACAACTTCCAGCGAGGGCAAAAGGAGCTCCTGTCCCAGATCCGCCGCCGGAAATCTGTGACGTCAACGGCGGCGCACGCACCCCCCGGCGAAAAATCCGGAGTACCATCGACACCGTCGAACTCGGGGGAGGAGATGGCGTCGACGTCGACGTCGTCGCCGGACTCGAAGAACCCGGGGTCGGTGGAGATGGCGGCGCCGAGCCAGGTGTCGGATTTATCGGACGAGAACGAGAAGCTGAAGCGGGAGAACGAGAATCTGAACTCGGAGCTGGCGCAGACGAAGAAGCAGTGCGACGAGCTGGTGGGGTTTCTGGTGGAGCACATGAAGATGAAGCCCGATCAGATCAACCGCATCATTGGGCAGGGAATCTGTGGGCCTAGCGGCGATGATTTTGAAGCGGACGATCATGGTCTTGATCTGGATATGGAGGGTGGCGATGATGAGGAAGAAGAGGAGGAGGGATTGAAGCTGTTTGGGGTTTGGATGAAAGGGGAGGAGAAAATGAAGGGGAAGAAAACGGGGCGATATGAGAAATTGGGGGTTGGTGGTGGCGGCGCCGGCGGGCCCCGCGGGAAGAGAATGAAGGGAGGGGTGGAATTTCACGCGCCGATGATGAGGACCGGGAAGGTGTGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

249

Amino Acids

27.29

Weight (kDa)

5.85

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36990
fragaria_vesca	FvH4_1g16030
malus_domestica	MD02G1171800.v1.1 MD15G1283700.v1.1
prunus_persica	Prupe.7G133600_v2.0.a1
pyrus_communis	pycom02g13850 pycom15g24670
rosa_chinensis	RchiOBHm_Chr2g0105601
rosa_laevigata	RLG00000017444
rosa_multiflora	Rmu_co8474487.1_g000001 Rmu_sc0001051.1_g000029
rosa_roxburghii	Rroxscaffold_2G00138040
rosa_rugosa	Rorug02G0129000
rosa_samantha	Rh2AG180500 Rh2BG189300 Rh2CG184700 Rh2DG186200
rosa_wichuraiana	Rw2G014110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	256
AatII	GACGTC	3 cut(s)	170, 254, 260
AccB1I	GGYRCC	2 cut(s)	301, 662
AccI	GTMKAC	2 cut(s)	248, 254
AccII	CGCG	3 cut(s)	101, 678, 713
AccIII	TCCGGA	1 cut(s)	203
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	6 cut(s)	167, 245, 251, 257, 302, 663
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	286, 316
AgsI	TTSAA	3 cut(s)	19, 503, 574
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	7 cut(s)	39, 52, 133, 343, 376, 406, 577
AluI	AGCT	7 cut(s)	39, 52, 133, 343, 376, 406, 577
Alw21I	GWGCWC	2 cut(s)	135, 429
AlwI	GGATC	1 cut(s)	139
Ama87I	CYCGRG	2 cut(s)	229, 280
Aor13HI	TCCGGA	1 cut(s)	203
AoxI	GGCC	2 cut(s)	482, 671
ApaI	GGGCCC	1 cut(s)	675
ApoI	RAATTY	1 cut(s)	704
AspLEI	GCGC	5 cut(s)	181, 304, 382, 665, 715
AspS9I	GGNCC	4 cut(s)	482, 671, 672, 726
AsuC2I	CCSGG	4 cut(s)	192, 281, 282, 730
AsuII	TTCGAA	1 cut(s)	70
AvaI	CYCGRG	2 cut(s)	229, 280
AvaII	GGWCC	1 cut(s)	726
BaeGI	GKGCMC	1 cut(s)	675
BanI	GGYRCC	2 cut(s)	301, 662
BanII	GRGCYC	2 cut(s)	135, 675
Bbv12I	GWGCWC	2 cut(s)	135, 429
BccI	CCATC	3 cut(s)	220, 235, 289
BceAI	ACGGC	1 cut(s)	189
BciT130I	CCWGG	1 cut(s)	311
BcnI	CCSGG	4 cut(s)	192, 281, 282, 730
BfaI	CTAG	2 cut(s)	486, 745
BfoI	RGCGCY	2 cut(s)	305, 666
BisI	GCNGC	5 cut(s)	151, 177, 300, 490, 661
BlsI	GCNGC	5 cut(s)	152, 178, 301, 491, 662
Bme1390I	CCNGG	5 cut(s)	192, 281, 282, 311, 730
Bme18I	GGWCC	1 cut(s)	726
BmeT110I	CYCGRG	2 cut(s)	229, 280
BmgT120I	GGNCC	4 cut(s)	482, 671, 672, 726
BmiI	GGNNCC	4 cut(s)	303, 664, 673, 674
BmrFI	CCNGG	5 cut(s)	192, 281, 282, 311, 730
BmsI	GCATC	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	19
BpuMI	CCSGG	4 cut(s)	192, 281, 282, 730
BsaHI	GRCGYC	6 cut(s)	167, 245, 251, 257, 302, 663
BsaJI	CCNNGG	4 cut(s)	190, 280, 281, 676
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 230, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 316
Bse118I	RCCGGY	1 cut(s)	665
BseAI	TCCGGA	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	4 cut(s)	190, 280, 281, 676
BseGI	GGATG	1 cut(s)	597
BseLI	CCNNNNNNNGG	2 cut(s)	286, 316
BseRI	GAGGAG	4 cut(s)	251, 575, 578, 617
BseSI	GKGCMC	1 cut(s)	675
Bsh1236I	CGCG	3 cut(s)	101, 678, 713
BshFI	GGCC	2 cut(s)	484, 673
BshNI	GGYRCC	2 cut(s)	301, 662
BsiHKAI	GWGCWC	2 cut(s)	135, 429
BsiHKCI	CYCGRG	2 cut(s)	229, 280
BsiSI	CCGG	8 cut(s)	83, 154, 192, 204, 266, 281, 666, 729
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	286, 316
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	484, 673
BsoBI	CYCGRG	2 cut(s)	229, 280
Bsp119I	TTCGAA	1 cut(s)	70
Bsp120I	GGGCCC	1 cut(s)	671
Bsp1286I	GDGCHC	3 cut(s)	135, 429, 675
Bsp13I	TCCGGA	1 cut(s)	203
Bsp143I	GATC	5 cut(s)	144, 445, 450, 511, 523
Bsp68I	TCGCGA	1 cut(s)	101
BspANI	GGCC	2 cut(s)	484, 673
BspEI	TCCGGA	1 cut(s)	203
BspFNI	CGCG	3 cut(s)	101, 678, 713
BspLI	GGNNCC	4 cut(s)	303, 664, 673, 674
BspPI	GGATC	1 cut(s)	139
BspT104I	TTCGAA	1 cut(s)	70
BspT107I	GGYRCC	2 cut(s)	301, 662
BsrFI	RCCGGY	1 cut(s)	665
BssAI	RCCGGY	1 cut(s)	665
BssECI	CCNNGG	4 cut(s)	190, 280, 281, 676
BssMI	GATC	5 cut(s)	144, 445, 450, 511, 523
BssNI	GRCGYC	6 cut(s)	167, 245, 251, 257, 302, 663
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	2 cut(s)	79, 222
Bst6I	CTCTTC	2 cut(s)	552, 677
BstACI	GRCGYC	6 cut(s)	167, 245, 251, 257, 302, 663
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	5 cut(s)	50, 183, 378, 667, 671
BstDSI	CCRYGG	1 cut(s)	676
BstF5I	GGATG	1 cut(s)	597
BstFNI	CGCG	3 cut(s)	101, 678, 713
BstH2I	RGCGCY	2 cut(s)	305, 666
BstHHI	GCGC	5 cut(s)	181, 304, 382, 665, 715
BstKTI	GATC	5 cut(s)	147, 448, 453, 514, 526
BstMBI	GATC	5 cut(s)	144, 445, 450, 511, 523
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 130, 182, 666, 675
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	5 cut(s)	190, 279, 280, 309, 728
BstSLI	GKGCMC	1 cut(s)	675
BstUI	CGCG	3 cut(s)	101, 678, 713
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	484, 673
BtgI	CCRYGG	1 cut(s)	676
BtgZI	GCGATG	2 cut(s)	507, 558
BtsCI	GGATG	1 cut(s)	597
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	401
BtuMI	TCGCGA	1 cut(s)	101
Cac8I	GCNNGC	5 cut(s)	50, 183, 378, 667, 671
CfoI	GCGC	5 cut(s)	181, 304, 382, 665, 715
Cfr10I	RCCGGY	1 cut(s)	665
Cfr13I	GGNCC	4 cut(s)	482, 671, 672, 726
Cfr42I	CCGCGG	1 cut(s)	679
Cfr9I	CCCGGG	1 cut(s)	280
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	2 cut(s)	430, 515
CviQI	GTAC	1 cut(s)	209
DinI	GGCGCC	2 cut(s)	303, 664
DpnI	GATC	5 cut(s)	146, 447, 452, 513, 525
DpnII	GATC	5 cut(s)	144, 445, 450, 511, 523
DrdI	GACNNNNNNGTC	1 cut(s)	256
DseDI	GACNNNNNNGTC	1 cut(s)	256
Eam1104I	CTCTTC	2 cut(s)	552, 677
EarI	CTCTTC	2 cut(s)	552, 677
EciI	GGCGGA	2 cut(s)	35, 137
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	2 cut(s)	135, 675
Eco47I	GGWCC	1 cut(s)	726
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	365
Eco88I	CYCGRG	2 cut(s)	229, 280
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	672
EcoRII	CCWGG	1 cut(s)	309
EcoT38I	GRGCYC	2 cut(s)	135, 675
EgeI	GGCGCC	2 cut(s)	303, 664
EheI	GGCGCC	2 cut(s)	303, 664
FaeI	CATG	2 cut(s)	433, 518
FaiI	YATR	5 cut(s)	63, 431, 516, 533, 636
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	2 cut(s)	429, 514
FauI	CCCGC	4 cut(s)	342, 662, 671, 683
FblI	GTMKAC	2 cut(s)	248, 254
Fnu4HI	GCNGC	5 cut(s)	151, 177, 300, 490, 661
FokI	GGATG	1 cut(s)	604
FriOI	GRGCYC	2 cut(s)	135, 675
Fsp4HI	GCNGC	5 cut(s)	151, 177, 300, 490, 661
FspBI	CTAG	2 cut(s)	486, 745
GlaI	GCGC	5 cut(s)	180, 303, 381, 664, 714
GluI	GCNGC	5 cut(s)	151, 177, 300, 490, 661
HaeII	RGCGCY	2 cut(s)	305, 666
HaeIII	GGCC	2 cut(s)	484, 673
HapII	CCGG	8 cut(s)	83, 154, 192, 204, 266, 281, 666, 729
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	5 cut(s)	181, 304, 382, 665, 715
Hin1I	GRCGYC	6 cut(s)	167, 245, 251, 257, 302, 663
Hin1II	CATG	2 cut(s)	433, 518
Hin6I	GCGC	5 cut(s)	179, 302, 380, 663, 713
HinP1I	GCGC	5 cut(s)	179, 302, 380, 663, 713
HincII	GTYRAC	3 cut(s)	171, 249, 255
HindII	GTYRAC	3 cut(s)	171, 249, 255
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	3 cut(s)	269, 361, 474
HpaII	CCGG	8 cut(s)	83, 154, 192, 204, 266, 281, 666, 729
Hpy166II	GTNNAC	3 cut(s)	171, 249, 255
Hpy188I	TCNGA	5 cut(s)	319, 328, 366, 373, 450
Hpy188III	TCNNGA	4 cut(s)	100, 204, 521, 527
Hpy8I	GTNNAC	3 cut(s)	171, 249, 255
Hpy99I	CGWCG	8 cut(s)	226, 250, 253, 256, 259, 262, 265, 404
HpyAV	CCTTC	3 cut(s)	607, 685, 727
HpyCH4III	ACNGT	2 cut(s)	79, 222
HpyCH4IV	ACGT	3 cut(s)	167, 251, 257
HpyCH4V	TGCA	1 cut(s)	741
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 130, 182, 666, 675
HpySE526I	ACGT	3 cut(s)	167, 251, 257
Hsp92I	GRCGYC	6 cut(s)	167, 245, 251, 257, 302, 663
Hsp92II	CATG	2 cut(s)	433, 518
HspAI	GCGC	5 cut(s)	179, 302, 380, 663, 713
KasI	GGCGCC	2 cut(s)	301, 662
Kpn2I	TCCGGA	1 cut(s)	203
KroI	GCCGGC	1 cut(s)	665
KroNI	GCCGGC	1 cut(s)	667
KspI	CCGCGG	1 cut(s)	679
Kzo9I	GATC	5 cut(s)	144, 445, 450, 511, 523
LmnI	GCTCC	4 cut(s)	130, 138, 373, 424
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	2 cut(s)	486, 745
MaeII	ACGT	3 cut(s)	167, 251, 257
MaeIII	GTNAC	2 cut(s)	3, 163
MalI	GATC	5 cut(s)	146, 447, 452, 513, 525
MboI	GATC	5 cut(s)	144, 445, 450, 511, 523
MboII	GAAGA	7 cut(s)	286, 400, 445, 566, 569, 631, 694
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	3 cut(s)	135, 429, 675
MluCI	AATT	3 cut(s)	28, 641, 704
Mly113I	GGCGCC	2 cut(s)	302, 663
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	297
MreI	CGCCGGCG	1 cut(s)	665
MroI	TCCGGA	1 cut(s)	203
MroNI	GCCGGC	1 cut(s)	665
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	678
MspI	CCGG	8 cut(s)	83, 154, 192, 204, 266, 281, 666, 729
MspR9I	CCNGG	5 cut(s)	192, 281, 282, 311, 730
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	3 cut(s)	101, 678, 713
MwoI	GCNNNNNNNGC	5 cut(s)	45, 130, 182, 666, 675
NaeI	GCCGGC	1 cut(s)	667
NarI	GGCGCC	2 cut(s)	302, 663
NciI	CCSGG	4 cut(s)	192, 281, 282, 730
NdeII	GATC	5 cut(s)	144, 445, 450, 511, 523
NgoMIV	GCCGGC	1 cut(s)	665
NlaIII	CATG	2 cut(s)	433, 518
NlaIV	GGNNCC	4 cut(s)	303, 664, 673, 674
NmeAIII	GCCGAG	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	163
NruI	TCGCGA	1 cut(s)	101
NspV	TTCGAA	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	4 cut(s)	221, 254, 257, 269
PdiI	GCCGGC	1 cut(s)	667
PfeI	GAWTC	2 cut(s)	361, 474
PflFI	GACNNNGTC	2 cut(s)	220, 259
PkrI	GCNGC	5 cut(s)	152, 178, 301, 491, 662
PleI	GAGTC	1 cut(s)	263
PluTI	GGCGCC	2 cut(s)	305, 666
PpsI	GAGTC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	4 cut(s)	303, 664, 673, 674
PspOMI	GGGCCC	1 cut(s)	671
PspPI	GGNCC	4 cut(s)	482, 671, 672, 726
PsuI	RGATCY	1 cut(s)	144
PsyI	GACNNNGTC	2 cut(s)	220, 259
RruI	TCGCGA	1 cut(s)	101
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	135
SacII	CCGCGG	1 cut(s)	679
SalI	GTCGAC	2 cut(s)	247, 253
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	5 cut(s)	151, 177, 300, 490, 661
Sau3AI	GATC	5 cut(s)	144, 445, 450, 511, 523
Sau96I	GGNCC	4 cut(s)	482, 671, 672, 726
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	5 cut(s)	192, 281, 282, 311, 730
SduI	GDGCHC	3 cut(s)	135, 429, 675
SfaNI	GCATC	1 cut(s)	468
SfoI	GGCGCC	2 cut(s)	303, 664
Sfr303I	CCGCGG	1 cut(s)	679
SfuI	TTCGAA	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	665
SgrBI	CCGCGG	1 cut(s)	679
SgrDI	CGTCGACG	2 cut(s)	247, 253
SinI	GGWCC	1 cut(s)	726
SmaI	CCCGGG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	3 cut(s)	28, 641, 704
SspDI	GGCGCC	2 cut(s)	301, 662
SspI	AATATT	1 cut(s)	14
SspMI	CTAG	2 cut(s)	486, 745
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	5 cut(s)	190, 279, 280, 309, 728
TaaI	ACNGT	2 cut(s)	79, 222
TaiI	ACGT	3 cut(s)	170, 254, 260
TaqI	TCGA	6 cut(s)	70, 215, 224, 248, 254, 272
TasI	AATT	3 cut(s)	28, 641, 704
TauI	GCSGC	5 cut(s)	153, 179, 302, 492, 663
TfiI	GAWTC	2 cut(s)	361, 474
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	401
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	5 cut(s)	446, 452, 608, 626, 704
TspMI	CCCGGG	1 cut(s)	280
TspRI	CASTG	1 cut(s)	401
Tth111I	GACNNNGTC	2 cut(s)	220, 259
VpaK11BI	GGWCC	1 cut(s)	726
XapI	RAATTY	1 cut(s)	704
XmaI	CCCGGG	1 cut(s)	280
XmiI	GTMKAC	2 cut(s)	248, 254
XspI	CTAG	2 cut(s)	486, 745
ZraI	GACGTC	3 cut(s)	168, 252, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.