FvH4_1g16030

heat shock factor protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013192
Physical Location & Seq
Reverse (-)
9104602 .. 9107500
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16030.t1

Sequence Viewer

Length: 873 bp
ATGGCGCAAAGGTCAGTTCCGGCGCCGTTTCTGATGAAGACGTTCCAGTTGGTGGATGATCCGGCCAGCGACGACGTGATCTCTTGGAATGAAAGTGGGACGGCGTTTGTGGTCTGGAAGACGGTGGATTTCGCCCGGGATATGCTGCCTAATTACTTCAAGCACAACAACTTCTCAAGCTTCGTTCGCCAGCTTAACACCTATGGCTTCCGAAAGACCGTGCCGGACAAATGGGAGTTCGCGAACGATAACTTCCGGCGAGGCGAGAAGGAGCTTCTCTCCGAGATTCGACGCCGCAAAGCGGTGACGTCATCTCCGGCACAAGCCACAGCCGTGGAAAAATCCGGCGGAGACACCGGTTCCAACTCGGGAGAGGATTTGGCGTCAACTTCCACGTCGTCCCCGGACTCGAAGAATCCGGGGTCGGTGGAGACGGCGGTGGCGGTGGGACATACGGCGGATTTGTCGGACGAGAATGAGAAGCTGAAGAAAGACAACGAGACGCTGAGCTCGGAGCTCGCACAAACGAAGAAGCAGTGTGATGAGCTTGTGGCGTTTCTGATGGAGTACATGAAGGTCGGGCCCGATCAGATCAATAAGATAATGCGGCAAGGAAGCTTTGGGTCCAGCTGTGATGGTGATGATCATGAACGTGGTACCGGTGAGAATGATAATGACGAAAAAGTTGTGGCGGGAGAAGAAGAGGGTTTGAAACTGTTTGGTGTTTGGGTGAAGGGGAAGGAGAACGAGGAGAAGAAGAAGAGGCGGGAGGAGAAGTCGGGTGGTGGCGGTGGTGGGCCGCAAGCGAAGAAGATTAAGATGGCGGAGTTTCACGCGCGGCCGCTTAGGAAGAGCGGGAAGGTGTGCAACTAA

Protein Analysis

291

Amino Acids

32.01

Weight (kDa)

5.96

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 10 - 99 3.6e-30 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36990
fragaria_vesca FvH4_1g16030
malus_domestica MD02G1171800.v1.1 MD15G1283700.v1.1
prunus_persica Prupe.7G133600_v2.0.a1
pyrus_communis pycom02g13850 pycom15g24670
rosa_chinensis RchiOBHm_Chr2g0105601
rosa_laevigata RLG00000017444
rosa_multiflora Rmu_co8474487.1_g000001 Rmu_sc0001051.1_g000029
rosa_roxburghii Rroxscaffold_2G00138040
rosa_rugosa Rorug02G0129000
rosa_samantha Rh2AG180500 Rh2BG189300 Rh2CG184700 Rh2DG186200
rosa_wichuraiana Rw2G014110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 311
Acc65I GGTACC 1 cut(s) 656
AccB1I GGYRCC 2 cut(s) 22, 656
AccB7I CCANNNNNTGG 1 cut(s) 52
AccBSI CCGCTC 1 cut(s) 855
AccII CGCG 3 cut(s) 242, 836, 838
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 2 cut(s) 63, 839
AcuI CTGAAG 1 cut(s) 506
AcyI GRCGYC 4 cut(s) 23, 292, 308, 383
AfaI GTAC 2 cut(s) 569, 658
AfiI CCNNNNNNNGG 2 cut(s) 52, 301
AgeI ACCGGT 2 cut(s) 356, 659
AgsI TTSAA 2 cut(s) 160, 712
AjiI CACGTC 2 cut(s) 76, 396
AleI CACNNNNGTG 1 cut(s) 332
AluBI AGCT 9 cut(s) 180, 193, 274, 484, 510, 517, 547, 618, 630
AluI AGCT 9 cut(s) 180, 193, 274, 484, 510, 517, 547, 618, 630
Alw21I GWGCWC 2 cut(s) 512, 519
Alw26I GTCTC 3 cut(s) 345, 425, 494
AlwI GGATC 1 cut(s) 53
Ama87I CYCGRG 2 cut(s) 135, 367
AoxI GGCC 4 cut(s) 63, 581, 797, 839
ApaI GGGCCC 1 cut(s) 585
ApeKI GCWGC 1 cut(s) 145
AsiGI ACCGGT 2 cut(s) 356, 659
Asp700I GAANNNNTTC 1 cut(s) 41
Asp718I GGTACC 1 cut(s) 656
AspLEI GCGC 3 cut(s) 7, 25, 838
AspS9I GGNCC 4 cut(s) 581, 582, 624, 797
AsuC2I CCSGG 4 cut(s) 136, 137, 404, 420
AsuHPI GGTGA 4 cut(s) 316, 650, 674, 742
AvaI CYCGRG 2 cut(s) 135, 367
AvaII GGWCC 1 cut(s) 624
BaeGI GKGCMC 1 cut(s) 585
BanI GGYRCC 2 cut(s) 22, 656
BanII GRGCYC 3 cut(s) 512, 519, 585
BbsI GAAGAC 2 cut(s) 44, 125
Bbv12I GWGCWC 2 cut(s) 512, 519
BbvI GCAGC 1 cut(s) 132
BccI CCATC 3 cut(s) 556, 629, 814
BceAI ACGGC 5 cut(s) 10, 117, 317, 450, 471
BclI TGATCA 1 cut(s) 643
BcnI CCSGG 4 cut(s) 136, 137, 404, 420
BcoDI GTCTC 3 cut(s) 345, 425, 494
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 6 cut(s) 146, 295, 608, 800, 839, 842
BlpI GCTNAGC 1 cut(s) 506
BlsI GCNGC 6 cut(s) 147, 296, 609, 801, 840, 843
Bme1390I CCNGG 4 cut(s) 136, 137, 404, 420
Bme18I GGWCC 1 cut(s) 624
BmeT110I CYCGRG 2 cut(s) 135, 367
BmgBI CACGTC 2 cut(s) 76, 396
BmgT120I GGNCC 4 cut(s) 581, 582, 624, 797
BmiI GGNNCC 5 cut(s) 24, 361, 583, 625, 658
BmrFI CCNGG 4 cut(s) 136, 137, 404, 420
BpiI GAAGAC 2 cut(s) 44, 125
BplI GAGNNNNNCTC 2 cut(s) 263, 295
Bpu10I CCTNAGC 1 cut(s) 845
Bpu1102I GCTNAGC 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 160
BpuMI CCSGG 4 cut(s) 136, 137, 404, 420
BsaHI GRCGYC 4 cut(s) 23, 292, 308, 383
BsaJI CCNNGG 4 cut(s) 135, 333, 402, 419
BsaWI WCCGGW 2 cut(s) 356, 659
BsaXI ACNNNNNCTCC 4 cut(s) 298, 328, 761, 791
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 301
Bse118I RCCGGY 2 cut(s) 356, 659
Bse1I ACTGG 1 cut(s) 46
BseDI CCNNGG 4 cut(s) 135, 333, 402, 419
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 52, 301
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 2 cut(s) 764, 785
BseSI GKGCMC 1 cut(s) 585
BseX3I CGGCCG 1 cut(s) 839
BseXI GCAGC 1 cut(s) 132
Bsh1236I CGCG 3 cut(s) 242, 836, 838
Bsh1285I CGRYCG 1 cut(s) 842
BshFI GGCC 4 cut(s) 65, 583, 799, 841
BshNI GGYRCC 2 cut(s) 22, 656
BshTI ACCGGT 2 cut(s) 356, 659
BsiEI CGRYCG 1 cut(s) 842
BsiHKAI GWGCWC 2 cut(s) 512, 519
BsiHKCI CYCGRG 2 cut(s) 135, 367
BslFI GGGAC 3 cut(s) 112, 385, 462
BslI CCNNNNNNNGG 2 cut(s) 52, 301
BsmAI GTCTC 3 cut(s) 345, 425, 494
BsmBI CGTCTC 2 cut(s) 425, 494
BsmFI GGGAC 3 cut(s) 112, 385, 462
BsnI GGCC 4 cut(s) 65, 583, 799, 841
BsoBI CYCGRG 2 cut(s) 135, 367
Bsp120I GGGCCC 1 cut(s) 581
Bsp1286I GDGCHC 3 cut(s) 512, 519, 585
Bsp143I GATC 5 cut(s) 58, 78, 586, 591, 643
Bsp1720I GCTNAGC 1 cut(s) 506
Bsp68I TCGCGA 1 cut(s) 242
BspANI GGCC 4 cut(s) 65, 583, 799, 841
BspCNI CTCAG 1 cut(s) 498
BspFNI CGCG 3 cut(s) 242, 836, 838
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 5 cut(s) 24, 361, 583, 625, 658
BspPI GGATC 1 cut(s) 53
BspQI GCTCTTC 1 cut(s) 845
BspT107I GGYRCC 2 cut(s) 22, 656
BsrBI CCGCTC 1 cut(s) 855
BsrFI RCCGGY 2 cut(s) 356, 659
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 2 cut(s) 356, 659
BssECI CCNNGG 4 cut(s) 135, 333, 402, 419
BssMI GATC 5 cut(s) 58, 78, 586, 591, 643
BssNI GRCGYC 4 cut(s) 23, 292, 308, 383
Bst4CI ACNGT 3 cut(s) 124, 220, 717
Bst6I CTCTTC 3 cut(s) 696, 755, 845
BstACI GRCGYC 4 cut(s) 23, 292, 308, 383
BstC8I GCNNGC 4 cut(s) 67, 191, 519, 804
BstDEI CTNAG 2 cut(s) 506, 845
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 3 cut(s) 242, 836, 838
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 3 cut(s) 7, 25, 838
BstKTI GATC 5 cut(s) 61, 81, 589, 594, 646
BstMAI GTCTC 3 cut(s) 345, 425, 494
BstMBI GATC 5 cut(s) 58, 78, 586, 591, 643
BstMCI CGRYCG 1 cut(s) 842
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstSCI CCNGG 4 cut(s) 134, 135, 402, 418
BstSLI GKGCMC 1 cut(s) 585
BstUI CGCG 3 cut(s) 242, 836, 838
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 2 cut(s) 44, 125
BstXI CCANNNNNNTGG 1 cut(s) 334
BstZI CGGCCG 1 cut(s) 839
BsuRI GGCC 4 cut(s) 65, 583, 799, 841
BtgI CCRYGG 1 cut(s) 333
BtrI CACGTC 2 cut(s) 76, 396
BtsCI GGATG 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 1 cut(s) 542
BtuMI TCGCGA 1 cut(s) 242
Cac8I GCNNGC 4 cut(s) 67, 191, 519, 804
CciI TCATGA 1 cut(s) 646
CciNI GCGGCCGC 1 cut(s) 839
CfoI GCGC 3 cut(s) 7, 25, 838
Cfr10I RCCGGY 2 cut(s) 356, 659
Cfr13I GGNCC 4 cut(s) 581, 582, 624, 797
Cfr9I CCCGGG 1 cut(s) 135
CseI GACGC 3 cut(s) 300, 372, 511
Csp6I GTAC 2 cut(s) 568, 657
CspAI ACCGGT 2 cut(s) 356, 659
CviAII CATG 2 cut(s) 571, 647
CviQI GTAC 2 cut(s) 568, 657
DdeI CTNAG 2 cut(s) 506, 845
DinI GGCGCC 1 cut(s) 24
DpnI GATC 5 cut(s) 60, 80, 588, 593, 645
DpnII GATC 5 cut(s) 58, 78, 586, 591, 643
EaeI YGGCCR 2 cut(s) 63, 839
EagI CGGCCG 1 cut(s) 839
Eam1104I CTCTTC 3 cut(s) 696, 755, 845
EarI CTCTTC 3 cut(s) 696, 755, 845
EciI GGCGGA 3 cut(s) 363, 473, 839
Ecl136II GAGCTC 2 cut(s) 510, 517
EclXI CGGCCG 1 cut(s) 839
Eco24I GRGCYC 3 cut(s) 512, 519, 585
Eco47I GGWCC 1 cut(s) 624
Eco52I CGGCCG 1 cut(s) 839
Eco53kI GAGCTC 2 cut(s) 510, 517
Eco57I CTGAAG 1 cut(s) 506
Eco88I CYCGRG 2 cut(s) 135, 367
EcoICRI GAGCTC 2 cut(s) 510, 517
EcoT38I GRGCYC 3 cut(s) 512, 519, 585
EgeI GGCGCC 1 cut(s) 24
EheI GGCGCC 1 cut(s) 24
Esp3I CGTCTC 2 cut(s) 425, 494
FaeI CATG 2 cut(s) 574, 650
FaiI YATR 5 cut(s) 143, 204, 453, 572, 648
FaqI GGGAC 3 cut(s) 112, 385, 462
FatI CATG 2 cut(s) 570, 646
FauI CCCGC 3 cut(s) 685, 759, 848
FbaI TGATCA 1 cut(s) 643
Fnu4HI GCNGC 6 cut(s) 146, 295, 608, 800, 839, 842
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 3 cut(s) 512, 519, 585
Fsp4HI GCNGC 6 cut(s) 146, 295, 608, 800, 839, 842
GlaI GCGC 3 cut(s) 6, 24, 837
GluI GCNGC 6 cut(s) 146, 295, 608, 800, 839, 842
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 4 cut(s) 65, 583, 799, 841
HgaI GACGC 3 cut(s) 300, 372, 511
HhaI GCGC 3 cut(s) 7, 25, 838
Hin1I GRCGYC 4 cut(s) 23, 292, 308, 383
Hin1II CATG 2 cut(s) 574, 650
Hin6I GCGC 3 cut(s) 5, 23, 836
HinP1I GCGC 3 cut(s) 5, 23, 836
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HindIII AAGCTT 2 cut(s) 178, 616
HinfI GANTC 3 cut(s) 286, 407, 415
HphI GGTGA 4 cut(s) 316, 650, 674, 742
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 7 cut(s) 33, 212, 283, 469, 514, 561, 591
Hpy188III TCNNGA 4 cut(s) 115, 241, 369, 647
Hpy8I GTNNAC 1 cut(s) 387
Hpy99I CGWCG 4 cut(s) 74, 77, 294, 400
HpyAV CCTTC 5 cut(s) 262, 568, 727, 733, 853
HpyCH4III ACNGT 3 cut(s) 124, 220, 717
HpyCH4IV ACGT 5 cut(s) 41, 75, 308, 395, 652
HpyCH4V TGCA 1 cut(s) 867
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 2 cut(s) 506, 845
HpySE526I ACGT 5 cut(s) 41, 75, 308, 395, 652
Hsp92I GRCGYC 4 cut(s) 23, 292, 308, 383
Hsp92II CATG 2 cut(s) 574, 650
HspAI GCGC 3 cut(s) 5, 23, 836
KasI GGCGCC 1 cut(s) 22
KpnI GGTACC 1 cut(s) 660
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 5 cut(s) 58, 78, 586, 591, 643
LguI GCTCTTC 1 cut(s) 845
LmnI GCTCC 2 cut(s) 271, 514
Lsp1109I GCAGC 1 cut(s) 132
MaeII ACGT 5 cut(s) 41, 75, 308, 395, 652
MaeIII GTNAC 1 cut(s) 304
MalI GATC 5 cut(s) 60, 80, 588, 593, 645
MbiI CCGCTC 1 cut(s) 855
MboI GATC 5 cut(s) 58, 78, 586, 591, 643
MhlI GDGCHC 3 cut(s) 512, 519, 585
MluCI AATT 1 cut(s) 151
Mly113I GGCGCC 1 cut(s) 23
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 2 cut(s) 387, 447
MnlI CCTC 6 cut(s) 254, 367, 697, 742, 756, 763
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 2 cut(s) 195, 816
MslI CAYNNNNRTG 2 cut(s) 332, 651
MspA1I CMGCKG 1 cut(s) 630
MspR9I CCNGG 4 cut(s) 136, 137, 404, 420
MvnI CGCG 3 cut(s) 242, 836, 838
MwoI GCNNNNNNNGC 1 cut(s) 186
NarI GGCGCC 1 cut(s) 23
NciI CCSGG 4 cut(s) 136, 137, 404, 420
NdeII GATC 5 cut(s) 58, 78, 586, 591, 643
NlaIII CATG 2 cut(s) 574, 650
NlaIV GGNNCC 5 cut(s) 24, 361, 583, 625, 658
NmuCI GTSAC 1 cut(s) 304
NotI GCGGCCGC 1 cut(s) 839
NruI TCGCGA 1 cut(s) 242
OliI CACNNNNGTG 1 cut(s) 332
PagI TCATGA 1 cut(s) 646
PciSI GCTCTTC 1 cut(s) 845
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 2 cut(s) 286, 415
PflMI CCANNNNNTGG 1 cut(s) 52
PinAI ACCGGT 2 cut(s) 356, 659
PkrI GCNGC 6 cut(s) 147, 296, 609, 801, 840, 843
PleI GAGTC 1 cut(s) 401
PluTI GGCGCC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 401
Psp124BI GAGCTC 2 cut(s) 512, 519
PspN4I GGNNCC 5 cut(s) 24, 361, 583, 625, 658
PspOMI GGGCCC 1 cut(s) 581
PspPI GGNCC 4 cut(s) 581, 582, 624, 797
PvuII CAGCTG 1 cut(s) 630
RruI TCGCGA 1 cut(s) 242
RsaI GTAC 2 cut(s) 569, 658
RsaNI GTAC 2 cut(s) 568, 657
RseI CAYNNNNRTG 2 cut(s) 332, 651
SacI GAGCTC 2 cut(s) 512, 519
SapI GCTCTTC 1 cut(s) 845
SaqAI TTAA 2 cut(s) 195, 816
SatI GCNGC 6 cut(s) 146, 295, 608, 800, 839, 842
Sau3AI GATC 5 cut(s) 58, 78, 586, 591, 643
Sau96I GGNCC 4 cut(s) 581, 582, 624, 797
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 4 cut(s) 136, 137, 404, 420
SduI GDGCHC 3 cut(s) 512, 519, 585
SfoI GGCGCC 1 cut(s) 24
SinI GGWCC 1 cut(s) 624
SmaI CCCGGG 1 cut(s) 137
SmiMI CAYNNNNRTG 2 cut(s) 332, 651
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 1 cut(s) 151
SspDI GGCGCC 1 cut(s) 22
SstI GAGCTC 2 cut(s) 512, 519
StyD4I CCNGG 4 cut(s) 134, 135, 402, 418
TaaI ACNGT 3 cut(s) 124, 220, 717
TaiI ACGT 5 cut(s) 44, 78, 311, 398, 655
TaqI TCGA 2 cut(s) 289, 410
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 567
TauI GCSGC 5 cut(s) 297, 610, 802, 841, 844
TfiI GAWTC 2 cut(s) 286, 415
Tru1I TTAA 2 cut(s) 195, 816
Tru9I TTAA 2 cut(s) 195, 816
TscAI CASTG 1 cut(s) 542
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 4 cut(s) 50, 105, 587, 663
TspMI CCCGGG 1 cut(s) 135
TspRI CASTG 1 cut(s) 542
Van91I CCANNNNNTGG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 624
XmaI CCCGGG 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 41
ZraI GACGTC 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.