Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005216

Physical Location & Seq

Genomic Coordinates Reverse (-)

17457135 .. 17459770

Gene Structure 2636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGATACAGAGAGAGGATCAATAAGTTCATCAGAAATATCCAGAACTGCTCATCTACAAGATAGAACAGTTGCTTGTCTTCCTCCTTCGTACGGACAACTTGTGACCATTCTTAGCATCGATGGTGGTGGAATCCGTGGGATCATTCCCGGCACAATCTTAGCTTACCTTGAATCACAACTTCAGGAATTGGATGGTGAGGAGGCAAGGCTTGTGGATTATTTCGATGTCATCTCAGGAACAAGCACCGGAGGTTTGATAGTGGCGATGTTGACCGCACAAGACCAAAGCGGTGGCCATAGCCGCAACAGCAACCGCCCTTTGTTTGAGGCCAAAGAAATCGTCCCTTTTTATCTCAAACACTCACCCAAAATCTTTCCACAGCCACGAGGGATATTCTGTGGTTGGGGTGAAACCATAGTGAGACTTGTAGGAGGACCCAAGTTCAACGGTAAATACCTTCATGACTTAGTTGAAGGTTTCTTGGGCGACACAAAATTAACTCAATCTTTGACAAACGTTGTCATACCTTGCTTCGACATCAAGAAACTCCAACCAGTTATCTTCTCTTCTTACCAGGCGGTGAATAATCAAGCTATGAACGCAAAACTATCAGACATATGTATAAGTACATCTGCGGCACCAACTTTTTTCCCGGCTCATCGATTCACCAATGAAGACAGTGAAGGAATTAAACATGAATTCAACCTCATTGATGGTGGCATCGCTGCCAATAACCCGACGTTATGTGCCATTGCGGAAGTGACAAAACAGATAATAAAGAAGAATCCTGTAATGGGAGATATAAGCCCATTAGATTTTACGAGGTTTCTGGTGATATCGATAGGTACAGGTTCCATAAGGAATCAAGAGAAGTACAATGCGAAAATGGCATCGAAATGGGGATTGATGTGTTGGGTCTTTGAAAGTGGATCAACTCCAATTCTTGATTGTTACAGTGAAGCTATTCATGACATGGTTGATTACCAAAGCTCTGTCGTCTTTCAAGCTCTTCGTTCCGAGAAGAATTATTTACGTATCGATGATGATTCGTTGAAGGGTGACTTAGGTTCAGTGGACATATCAACAGAAAAGAACATGGAAGGTCTTGTTGAAGTTGGTGAAGCTTTATTAAAGAAAAGAGTCTCTCGTGTCAATCTCGAAAGCGGCCATTATCAACCTATTTCCGAAAATGTGACTAATGAAGAAGCTCTCAAAAGGTTTGCAAAAGTTCTGTCAGAAGAAAGGAAGCTCAGAGAATCAAGATCTCCTAAACTCAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0033993 GO:0042221 GO:0044424 GO:0044464 GO:0047372 GO:0050896 GO:0052689 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

428

Amino Acids

47.2

Weight (kDa)

5.85

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	38 - 249	1.8e-25	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37050 AT4G37060 AT4G37060 AT4G37070 AT4G37070 AT4G37070 AT4G37070
fragaria_vesca	FvH4_1g15780 FvH4_1g15780 FvH4_1g15780 FvH4_1g15780
malus_domestica	MD02G1169600.v1.1
prunus_persica	Prupe.7G135600_v2.0.a1 Prupe.7G135600_v2.0.a1
pyrus_communis	pycom02g13660
rosa_chinensis	RchiOBHm_Chr2g0105061
rosa_laevigata	RLG00000017398
rosa_multiflora	Rmu_sc0005160.1_g000011
rosa_roxburghii	Rroxscaffold_2G00138460
rosa_rugosa	Rorug02G0125900
rosa_samantha	Rh2AG176700 Rh2BG184600 Rh2CG181000 Rh2DG182800 Rh3CG284400 Rh5CG540900 Rh6DG471400 Rh6DG471600
rosa_wichuraiana	Rw2G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	640
AciI	CCGC	8 cut(s)	276, 291, 304, 316, 581, 638, 758, 1167
AclI	AACGTT	1 cut(s)	519
AclWI	GGATC	3 cut(s)	25, 149, 940
AcoI	YGGCCR	2 cut(s)	295, 1168
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	4 cut(s)	92, 631, 850, 878
AfiI	CCNNNNNNNGG	2 cut(s)	92, 797
AgsI	TTSAA	8 cut(s)	173, 448, 476, 706, 926, 1007, 1057, 1115
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	8 cut(s)	164, 596, 965, 993, 1010, 1127, 1211, 1252
AluI	AGCT	8 cut(s)	164, 596, 965, 993, 1010, 1127, 1211, 1252
Alw26I	GTCTC	2 cut(s)	418, 1150
AlwI	GGATC	3 cut(s)	25, 149, 940
AoxI	GGCC	3 cut(s)	295, 330, 1168
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	1 cut(s)	701
ArsI	GACNNNNNNTTYG	4 cut(s)	327, 359, 1220, 1252
Asp700I	GAANNNNTTC	1 cut(s)	966
AspS9I	GGNCC	1 cut(s)	437
AsuC2I	CCSGG	2 cut(s)	150, 656
AsuHPI	GGTGA	8 cut(s)	209, 357, 422, 595, 661, 847, 1073, 1133
AvaII	GGWCC	1 cut(s)	437
BalI	TGGCCA	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	640
BauI	CACGAG	2 cut(s)	387, 1149
BbsI	GAAGAC	2 cut(s)	71, 684
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	3 cut(s)	116, 188, 710
BciT130I	CCWGG	1 cut(s)	578
BcnI	CCSGG	2 cut(s)	150, 656
BcoDI	GTCTC	2 cut(s)	418, 1150
BglII	AGATCT	1 cut(s)	1265
BisI	GCNGC	4 cut(s)	304, 639, 729, 1168
BlsI	GCNGC	4 cut(s)	305, 640, 730, 1169
Bme1390I	CCNGG	3 cut(s)	150, 578, 656
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	3 cut(s)	439, 642, 856
BmrFI	CCNGG	3 cut(s)	150, 578, 656
BmsI	GCATC	3 cut(s)	126, 732, 902
BpiI	GAAGAC	2 cut(s)	71, 684
BpuEI	CTTGAG	1 cut(s)	1262
BpuMI	CCSGG	2 cut(s)	150, 656
Bsa29I	ATCGAT	4 cut(s)	120, 664, 842, 1041
BsaAI	YACGTR	1 cut(s)	1037
BsaJI	CCNNGG	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 797
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	753
BseBI	CCWGG	1 cut(s)	578
BseCI	ATCGAT	4 cut(s)	120, 664, 842, 1041
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	92, 797
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	2 cut(s)	249, 1267
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	715
BshFI	GGCC	3 cut(s)	297, 332, 1170
BshNI	GGYRCC	1 cut(s)	640
BshVI	ATCGAT	4 cut(s)	120, 664, 842, 1041
BsiSI	CCGG	3 cut(s)	150, 249, 656
BsiWI	CGTACG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	92, 797
BsmAI	GTCTC	2 cut(s)	418, 1150
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	3 cut(s)	297, 332, 1170
Bsp143I	GATC	4 cut(s)	17, 141, 932, 1265
BspACI	CCGC	8 cut(s)	276, 291, 304, 316, 581, 638, 758, 1167
BspANI	GGCC	3 cut(s)	297, 332, 1170
BspCNI	CTCAG	2 cut(s)	248, 1266
BspDI	ATCGAT	4 cut(s)	120, 664, 842, 1041
BspHI	TCATGA	2 cut(s)	463, 970
BspLI	GGNNCC	3 cut(s)	439, 642, 856
BspPI	GGATC	3 cut(s)	25, 149, 940
BspQI	GCTCTTC	1 cut(s)	1017
BspT107I	GGYRCC	1 cut(s)	640
BsrDI	GCAATG	1 cut(s)	753
BsrI	ACTGG	1 cut(s)	557
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	4 cut(s)	17, 141, 932, 1265
BssSI	CACGAG	2 cut(s)	387, 1149
Bst2BI	CACGAG	2 cut(s)	387, 1149
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	4 cut(s)	70, 452, 683, 959
Bst6I	CTCTTC	2 cut(s)	574, 1017
BstBAI	YACGTR	1 cut(s)	1037
BstDEI	CTNAG	6 cut(s)	113, 160, 235, 469, 1066, 1253
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	4 cut(s)	20, 144, 935, 1268
BstMAI	GTCTC	2 cut(s)	418, 1150
BstMBI	GATC	4 cut(s)	17, 141, 932, 1265
BstMWI	GCNNNNNNNGC	4 cut(s)	303, 309, 602, 890
BstNI	CCWGG	1 cut(s)	578
BstSCI	CCNGG	3 cut(s)	148, 576, 654
BstSNI	TACGTA	1 cut(s)	1037
BstV1I	GCAGC	1 cut(s)	715
BstV2I	GAAGAC	2 cut(s)	71, 684
BstX2I	RGATCY	1 cut(s)	1265
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	1265
Bsu15I	ATCGAT	4 cut(s)	120, 664, 842, 1041
BsuRI	GGCC	3 cut(s)	297, 332, 1170
BsuTUI	ATCGAT	4 cut(s)	120, 664, 842, 1041
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	2 cut(s)	281, 709
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	3 cut(s)	688, 964, 1080
CciI	TCATGA	2 cut(s)	463, 970
Cfr13I	GGNCC	1 cut(s)	437
ClaI	ATCGAT	4 cut(s)	120, 664, 842, 1041
Csp6I	GTAC	4 cut(s)	91, 630, 849, 877
CspCI	CAANNNNNGTGG	2 cut(s)	195, 230
CviAII	CATG	5 cut(s)	464, 698, 971, 976, 1099
CviQI	GTAC	4 cut(s)	91, 630, 849, 877
DdeI	CTNAG	6 cut(s)	113, 160, 235, 469, 1066, 1253
DpnI	GATC	4 cut(s)	19, 143, 934, 1267
DpnII	GATC	4 cut(s)	17, 141, 932, 1265
EaeI	YGGCCR	2 cut(s)	295, 1168
Eam1104I	CTCTTC	2 cut(s)	574, 1017
EarI	CTCTTC	2 cut(s)	574, 1017
Eco105I	TACGTA	1 cut(s)	1037
Eco32I	GATATC	1 cut(s)	840
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	840
FaeI	CATG	5 cut(s)	467, 701, 974, 979, 1102
FalI	AAGNNNNNCTT	2 cut(s)	1049, 1081
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	5 cut(s)	463, 697, 970, 975, 1098
FauNDI	CATATG	1 cut(s)	620
Fnu4HI	GCNGC	4 cut(s)	304, 639, 729, 1168
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	4 cut(s)	304, 639, 729, 1168
GluI	GCNGC	4 cut(s)	304, 639, 729, 1168
HaeIII	GGCC	3 cut(s)	297, 332, 1170
HapII	CCGG	3 cut(s)	150, 249, 656
Hin1II	CATG	5 cut(s)	467, 701, 974, 979, 1102
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	1125
HinfI	GANTC	8 cut(s)	132, 173, 666, 787, 865, 1049, 1143, 1259
HpaII	CCGG	3 cut(s)	150, 249, 656
HphI	GGTGA	8 cut(s)	209, 357, 422, 595, 661, 847, 1073, 1133
Hpy166II	GTNNAC	2 cut(s)	273, 1078
Hpy188I	TCNGA	6 cut(s)	34, 616, 1021, 1189, 1240, 1256
Hpy8I	GTNNAC	2 cut(s)	273, 1078
Hpy99I	CGWCG	1 cut(s)	745
HpyAV	CCTTC	6 cut(s)	96, 470, 470, 680, 1051, 1097
HpyCH4III	ACNGT	4 cut(s)	70, 452, 683, 959
HpyCH4IV	ACGT	3 cut(s)	519, 743, 1036
HpyCH4V	TGCA	1 cut(s)	1226
HpyF10VI	GCNNNNNNNGC	4 cut(s)	303, 309, 602, 890
HpyF3I	CTNAG	6 cut(s)	113, 160, 235, 469, 1066, 1253
HpySE526I	ACGT	3 cut(s)	519, 743, 1036
Hsp92II	CATG	5 cut(s)	467, 701, 974, 979, 1102
Kzo9I	GATC	4 cut(s)	17, 141, 932, 1265
LguI	GCTCTTC	1 cut(s)	1017
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	3 cut(s)	126, 732, 902
MaeII	ACGT	3 cut(s)	519, 743, 1036
MaeIII	GTNAC	5 cut(s)	103, 763, 953, 1061, 1195
MalI	GATC	4 cut(s)	19, 143, 934, 1267
MboI	GATC	4 cut(s)	17, 141, 932, 1265
MboII	GAAGA	9 cut(s)	71, 556, 561, 689, 796, 1004, 1036, 1217, 1253
MflI	RGATCY	1 cut(s)	1265
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	6 cut(s)	188, 497, 690, 701, 942, 1027
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	1152
MmeI	TCCRAC	1 cut(s)	577
Mox20I	TGGCCA	1 cut(s)	297
MroXI	GAANNNNTTC	1 cut(s)	966
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	3 cut(s)	500, 693, 1133
MslI	CAYNNNNRTG	1 cut(s)	898
Msp20I	TGGCCA	1 cut(s)	297
MspI	CCGG	3 cut(s)	150, 249, 656
MspR9I	CCNGG	3 cut(s)	150, 578, 656
MvaI	CCWGG	1 cut(s)	578
MwoI	GCNNNNNNNGC	4 cut(s)	303, 309, 602, 890
NciI	CCSGG	2 cut(s)	150, 656
NdeI	CATATG	1 cut(s)	620
NdeII	GATC	4 cut(s)	17, 141, 932, 1265
NlaIII	CATG	5 cut(s)	467, 701, 974, 979, 1102
NlaIV	GGNNCC	3 cut(s)	439, 642, 856
NmuCI	GTSAC	4 cut(s)	103, 763, 1061, 1195
PagI	TCATGA	2 cut(s)	463, 970
PciSI	GCTCTTC	1 cut(s)	1017
PdmI	GAANNNNTTC	1 cut(s)	966
PfeI	GAWTC	7 cut(s)	132, 173, 666, 787, 865, 1049, 1259
Pfl23II	CGTACG	1 cut(s)	90
PkrI	GCNGC	4 cut(s)	305, 640, 730, 1169
PleI	GAGTC	1 cut(s)	1151
PpsI	GAGTC	1 cut(s)	1151
Ppu21I	YACGTR	1 cut(s)	1037
PpuMI	RGGWCCY	1 cut(s)	437
Psp1406I	AACGTT	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspLI	CGTACG	1 cut(s)	90
PspN4I	GGNNCC	3 cut(s)	439, 642, 856
PspPI	GGNCC	1 cut(s)	437
PspPPI	RGGWCCY	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	1265
RsaI	GTAC	4 cut(s)	92, 631, 850, 878
RsaNI	GTAC	4 cut(s)	91, 630, 849, 877
RseI	CAYNNNNRTG	1 cut(s)	898
SapI	GCTCTTC	1 cut(s)	1017
SaqAI	TTAA	3 cut(s)	500, 693, 1133
SatI	GCNGC	4 cut(s)	304, 639, 729, 1168
Sau3AI	GATC	4 cut(s)	17, 141, 932, 1265
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	1 cut(s)	1152
ScrFI	CCNGG	3 cut(s)	150, 578, 656
SfaNI	GCATC	3 cut(s)	126, 732, 902
SinI	GGWCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	898
SmlI	CTYRAG	1 cut(s)	1277
SmoI	CTYRAG	1 cut(s)	1277
SnaBI	TACGTA	1 cut(s)	1037
Sse9I	AATT	6 cut(s)	188, 497, 690, 701, 942, 1027
SsiI	CCGC	8 cut(s)	276, 291, 304, 316, 581, 638, 758, 1167
StyD4I	CCNGG	3 cut(s)	148, 576, 654
TaaI	ACNGT	4 cut(s)	70, 452, 683, 959
TaiI	ACGT	3 cut(s)	522, 746, 1039
TaqI	TCGA	8 cut(s)	120, 225, 537, 664, 842, 896, 1041, 1161
TasI	AATT	6 cut(s)	188, 497, 690, 701, 942, 1027
TatI	WGTACW	2 cut(s)	629, 876
TauI	GCSGC	3 cut(s)	306, 641, 1170
TfiI	GAWTC	7 cut(s)	132, 173, 666, 787, 865, 1049, 1259
Tru1I	TTAA	3 cut(s)	500, 693, 1133
Tru9I	TTAA	3 cut(s)	500, 693, 1133
TscAI	CASTG	3 cut(s)	688, 964, 1080
TseFI	GTSAC	4 cut(s)	103, 763, 1061, 1195
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	4 cut(s)	103, 763, 1061, 1195
TspDTI	ATGAA	7 cut(s)	18, 452, 614, 690, 714, 959, 1218
TspGWI	ACGGA	2 cut(s)	108, 125
TspRI	CASTG	3 cut(s)	688, 964, 1080
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	1 cut(s)	701
XmnI	GAANNNNTTC	1 cut(s)	966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.