Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0005216

Physical Location & Seq

Genomic Coordinates Forward (+)

28630480 .. 28633701

Gene Structure 3222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG284400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCAAAGGGATGACCAATTGAGCACCGACTTGAATTCCATGGATAATGCTACGCCCGAAAACTTGAAAAAACTTGTAAAAGTGGGAGAGGCACTGTTAAAGAAACAAGCTTCAAAGTTGAATATAGCTACCGGCCTCCATGAGCCTGATGAACGTCATATTACTAATGAAGAGGCTCTCAGAAGGGTAGCGGCGGTTCTCTCCAAAGAGAAGAAGGAACGTGCAATCAAATCAGCAGCACCACAAGCAAACCCAGCATCTGCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

89

Amino Acids

9.73

Weight (kDa)

9.05

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37050 AT4G37060 AT4G37060 AT4G37070 AT4G37070 AT4G37070 AT4G37070
fragaria_vesca	FvH4_1g15780 FvH4_1g15780 FvH4_1g15780 FvH4_1g15780
malus_domestica	MD02G1169600.v1.1
prunus_persica	Prupe.7G135600_v2.0.a1 Prupe.7G135600_v2.0.a1
pyrus_communis	pycom02g13660
rosa_chinensis	RchiOBHm_Chr2g0105061
rosa_laevigata	RLG00000017398
rosa_multiflora	Rmu_sc0005160.1_g000011
rosa_roxburghii	Rroxscaffold_2G00138460
rosa_rugosa	Rorug02G0125900
rosa_samantha	Rh2AG176700 Rh2BG184600 Rh2CG181000 Rh2DG182800 Rh3CG284400 Rh5CG540900 Rh6DG471400 Rh6DG471600
rosa_wichuraiana	Rw2G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	191, 194
AcsI	RAATTY	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	34, 67, 114, 121
AluBI	AGCT	3 cut(s)	110, 128, 267
AluI	AGCT	3 cut(s)	110, 128, 267
Alw21I	GWGCWC	1 cut(s)	26
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	248
BisI	GCNGC	2 cut(s)	192, 237
BlsI	GCNGC	2 cut(s)	193, 238
BmsI	GCATC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	39
Bse118I	RCCGGY	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	248
BseYI	CCCAGC	1 cut(s)	253
BshFI	GGCC	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	132
BsnI	GGCC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	2 cut(s)	191, 194
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	179
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 254
BstV1I	GCAGC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	265
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	131
CviAII	CATG	2 cut(s)	40, 140
CviJI	RGCY	6 cut(s)	110, 128, 135, 145, 176, 267
CviKI_1	RGCY	6 cut(s)	110, 128, 135, 145, 176, 267
DdeI	CTNAG	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	43, 143
FaiI	YATR	4 cut(s)	41, 125, 141, 159
FatI	CATG	2 cut(s)	39, 139
Fnu4HI	GCNGC	2 cut(s)	192, 237
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	192, 237
GluI	GCNGC	2 cut(s)	192, 237
GsaI	CCCAGC	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	2 cut(s)	43, 143
HindIII	AAGCTT	1 cut(s)	108
HpaII	CCGG	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	177, 208
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	2 cut(s)	154, 220
HpyCH4V	TGCA	2 cut(s)	4, 224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 254
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	2 cut(s)	154, 220
Hsp92II	CATG	2 cut(s)	43, 143
LpnPI	CCDG	2 cut(s)	145, 159
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	1 cut(s)	266
MaeII	ACGT	2 cut(s)	154, 220
MboII	GAAGA	2 cut(s)	182, 223
MfeI	CAATTG	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	2 cut(s)	17, 34
MnlI	CCTC	3 cut(s)	82, 146, 166
MseI	TTAA	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	245, 254
NcoI	CCATGG	1 cut(s)	39
NlaIII	CATG	2 cut(s)	43, 143
PkrI	GCNGC	2 cut(s)	193, 238
PspFI	CCCAGC	1 cut(s)	253
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PstNI	CAGNNNCTG	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	2 cut(s)	192, 237
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	5 cut(s)	112, 130, 157, 223, 269
SfaNI	GCATC	1 cut(s)	266
Sse9I	AATT	2 cut(s)	17, 34
SsiI	CCGC	2 cut(s)	191, 194
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	2 cut(s)	157, 223
TasI	AATT	2 cut(s)	17, 34
TauI	GCSGC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	1 cut(s)	99
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	165, 183
TspRI	CASTG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.