Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005216

Physical Location & Seq

Genomic Coordinates Forward (+)

10858361 .. 10858967

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCAGAAACCCATAGGAAGCCCCAAGATGAGAACCACCCATCTATGCATTCCAAGGCTGATGAAAACCAGCAAGTACTCCAACAAAACCTCTAAACCCCTGGTATCTCCCATGACCCTGCTCGAGCGGTTTCGCGAGGCGGTTTTGCGATTGATCATGTTATCTGCAGTGTCCAACAAGTCCACAGCGAACCAAAATCGATCCACAGATTATGTGCAGCAATGTACATACTGTCCTTATGACCCTCACCACAGCGAGGCGGTTGCCGACTGCATCGAGTTCATCAAGAAGAAGGCTTCTCCCGAGGACGAGGACCACAACCGGGGATCGTCAGCTAGTAGTGCTAGTAGTTCCAATATTGATGCCGCAGCGGATCTAGAGGTCATCATACCAGTGCTAGTTAATTATGCGACATATGTTAACGAGAGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0033993 GO:0042221 GO:0044424 GO:0044464 GO:0047372 GO:0050896 GO:0052689 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

144

Amino Acids

16.01

Weight (kDa)

8.34

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37050 AT4G37060 AT4G37060 AT4G37070 AT4G37070 AT4G37070 AT4G37070
fragaria_vesca	FvH4_1g15780 FvH4_1g15780 FvH4_1g15780 FvH4_1g15780
malus_domestica	MD02G1169600.v1.1
prunus_persica	Prupe.7G135600_v2.0.a1 Prupe.7G135600_v2.0.a1
pyrus_communis	pycom02g13660
rosa_chinensis	RchiOBHm_Chr2g0105061
rosa_laevigata	RLG00000017398
rosa_multiflora	Rmu_sc0005160.1_g000011
rosa_roxburghii	Rroxscaffold_2G00138460
rosa_rugosa	Rorug02G0125900
rosa_samantha	Rh2AG176700 Rh2BG184600 Rh2CG181000 Rh2DG182800 Rh3CG284400 Rh5CG540900 Rh6DG471400 Rh6DG471600
rosa_wichuraiana	Rw2G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	127
AccII	CGCG	1 cut(s)	135
AciI	CCGC	5 cut(s)	127, 140, 260, 366, 371
AclWI	GGATC	3 cut(s)	195, 334, 381
AfaI	GTAC	2 cut(s)	77, 226
AfiI	CCNNNNNNNGG	2 cut(s)	256, 322
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
AlwI	GGATC	3 cut(s)	195, 334, 381
Ama87I	CYCGRG	2 cut(s)	122, 302
ApeKI	GCWGC	2 cut(s)	217, 368
AspS9I	GGNCC	1 cut(s)	313
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	239
AvaI	CYCGRG	2 cut(s)	122, 302
AvaII	GGWCC	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	229, 380
BccI	CCATC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	1 cut(s)	101
BclI	TGATCA	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	323
BfaI	CTAG	4 cut(s)	336, 345, 377, 398
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	3 cut(s)	218, 366, 369
BlsI	GCNGC	3 cut(s)	219, 367, 370
BmcAI	AGTACT	1 cut(s)	77
Bme1390I	CCNGG	2 cut(s)	101, 323
Bme18I	GGWCC	1 cut(s)	313
BmeT110I	CYCGRG	2 cut(s)	122, 302
BmgT120I	GGNCC	1 cut(s)	313
BmrFI	CCNGG	2 cut(s)	101, 323
BmsI	GCATC	2 cut(s)	282, 352
BpuMI	CCSGG	1 cut(s)	323
Bsa29I	ATCGAT	1 cut(s)	199
BsaJI	CCNNGG	4 cut(s)	53, 99, 303, 322
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 322
Bse1I	ACTGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	101
BseCI	ATCGAT	1 cut(s)	199
BseDI	CCNNGG	4 cut(s)	53, 99, 303, 322
BseLI	CCNNNNNNNGG	2 cut(s)	256, 322
BseMI	GCAATG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	229, 380
BsgI	GTGCAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	135
BshVI	ATCGAT	1 cut(s)	199
BsiHKCI	CYCGRG	2 cut(s)	122, 302
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	256, 322
BsmI	GAATGC	1 cut(s)	48
BsoBI	CYCGRG	2 cut(s)	122, 302
Bsp1407I	TGTACA	1 cut(s)	224
Bsp143I	GATC	4 cut(s)	153, 200, 326, 373
Bsp68I	TCGCGA	1 cut(s)	135
BspACI	CCGC	5 cut(s)	127, 140, 260, 366, 371
BspDI	ATCGAT	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	135
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	3 cut(s)	195, 334, 381
BsrBI	CCGCTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	227
BsrGI	TGTACA	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	4 cut(s)	53, 99, 303, 322
BssMI	GATC	4 cut(s)	153, 200, 326, 373
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	233
BstAUI	TGTACA	1 cut(s)	224
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	4 cut(s)	156, 203, 329, 376
BstMBI	GATC	4 cut(s)	153, 200, 326, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	99, 321
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	229, 380
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
Bsu15I	ATCGAT	1 cut(s)	199
BsuTUI	ATCGAT	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 399
BtuMI	TCGCGA	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	313
ClaI	ATCGAT	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	76, 225
CviAII	CATG	2 cut(s)	112, 157
CviJI	RGCY	4 cut(s)	21, 58, 296, 335
CviKI_1	RGCY	4 cut(s)	21, 58, 296, 335
CviQI	GTAC	2 cut(s)	76, 225
DpnI	GATC	4 cut(s)	155, 202, 328, 375
DpnII	GATC	4 cut(s)	153, 200, 326, 373
Eco130I	CCWWGG	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	313
Eco88I	CYCGRG	2 cut(s)	122, 302
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	2 cut(s)	115, 160
FatI	CATG	2 cut(s)	111, 156
FauNDI	CATATG	1 cut(s)	415
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	218, 366, 369
Fsp4HI	GCNGC	3 cut(s)	218, 366, 369
FspBI	CTAG	4 cut(s)	336, 345, 377, 398
GluI	GCNGC	3 cut(s)	218, 366, 369
HapII	CCGG	1 cut(s)	322
Hin1II	CATG	2 cut(s)	115, 160
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	1 cut(s)	427
HpaI	GTTAAC	1 cut(s)	421
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	183, 421
Hpy188III	TCNNGA	4 cut(s)	134, 286, 302, 377
Hpy8I	GTNNAC	2 cut(s)	183, 421
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	5 cut(s)	4, 48, 167, 217, 273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	115, 160
Ksp22I	TGATCA	1 cut(s)	153
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	153, 200, 326, 373
LpnPI	CCDG	6 cut(s)	82, 86, 113, 131, 335, 405
Lsp1109I	GCAGC	2 cut(s)	229, 380
LweI	GCATC	2 cut(s)	282, 352
MaeI	CTAG	4 cut(s)	336, 345, 377, 398
MalI	GATC	4 cut(s)	155, 202, 328, 375
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	4 cut(s)	153, 200, 326, 373
MboII	GAAGA	1 cut(s)	301
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	1 cut(s)	403
MmeI	TCCRAC	2 cut(s)	105, 198
MnlI	CCTC	7 cut(s)	100, 130, 250, 255, 298, 304, 373
Mph1103I	ATGCAT	1 cut(s)	50
MseI	TTAA	2 cut(s)	402, 420
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	101, 323
Mva1269I	GAATGC	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	341
NciI	CCSGG	1 cut(s)	323
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	4 cut(s)	153, 200, 326, 373
NlaIII	CATG	2 cut(s)	115, 160
NruI	TCGCGA	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	50
PaeR7I	CTCGAG	1 cut(s)	122
PctI	GAATGC	1 cut(s)	48
PkrI	GCNGC	3 cut(s)	219, 367, 370
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	313
PspXI	VCTCGAGB	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	373
RruI	TCGCGA	1 cut(s)	135
RsaI	GTAC	2 cut(s)	77, 226
RsaNI	GTAC	2 cut(s)	76, 225
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	402, 420
SatI	GCNGC	3 cut(s)	218, 366, 369
Sau3AI	GATC	4 cut(s)	153, 200, 326, 373
Sau96I	GGNCC	1 cut(s)	313
ScaI	AGTACT	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	101, 323
SetI	ASST	3 cut(s)	92, 337, 384
SfaNI	GCATC	2 cut(s)	282, 352
SfcI	CTRYAG	1 cut(s)	165
Sfr274I	CTCGAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	313
SlaI	CTCGAG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	403
SsiI	CCGC	5 cut(s)	127, 140, 260, 366, 371
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	4 cut(s)	336, 345, 377, 398
StyD4I	CCNGG	2 cut(s)	99, 321
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	3 cut(s)	123, 199, 276
TasI	AATT	1 cut(s)	403
TatI	WGTACW	2 cut(s)	75, 224
TauI	GCSGC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	402, 420
Tru9I	TTAA	2 cut(s)	402, 420
TscAI	CASTG	2 cut(s)	174, 399
TseI	GCWGC	2 cut(s)	217, 368
TspDTI	ATGAA	2 cut(s)	77, 271
TspRI	CASTG	2 cut(s)	174, 399
VpaK11BI	GGWCC	1 cut(s)	313
XbaI	TCTAGA	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	122
XspI	CTAG	4 cut(s)	336, 345, 377, 398
ZrmI	AGTACT	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.