Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005216

Physical Location & Seq

Genomic Coordinates Forward (+)

15050182 .. 15052567

Gene Structure 2386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G013850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGCAAGTACAAGCAGAACCTCATCGCTACAAGTTCAGCCTCCCAGATATGGGAATCTTATAACTGTTCTTAGCATAGACGGCGGAGGAATTAGGGGAATCATCCCTGGAGTTCTTCTCACTTATCTTGAATCTCAACTTCAGGAACTAGATGGTGAAGATGCAAGGCTTGCAGACTACTTCGACGTGATTGCTGGGACAAGCACAGGTGGTCTAATTACGGCCATGTTAGCAGCACCCGACGAAAACAACAGGCCGCTATTCGCTGCCAAAGACATCGTGCCTTTCTACCTTGATAACTGCCCTAAAATATTCCCACAATCAAGGGGATTGTGTGCCTCAGTTACAGATCTGGTTAAAGTTCTAATAGGACCAAAGTACGATGGGAAGTATCGGCACAAGCTAATAAGAGATATAGTAGGGGACAAAAGATTGAGCCAGACATTGACAAACGTGGTTATTCCAACTTTCGACATCAAGAAACTACTTCCTGTCATCTTTTCCTCCTATCAGGTGACAAGCTATCCAGTCAAGAATGCTCAACTTTCAGACATTTGCATCGGAACCTCAGCAGCGCCTACTTACTTTCCTGCATACTATTTTGAGAACCATCAGCAAGGAAAAACCGAAGAATTTAACCTCATTGATGGTGGCGTGGCCGCTAATAATCCGGCTTTGGTTGCCATTAGTGAAGTGACAAAACAAATTATGAGAAAGAATCCAGATTTCTCGGAGGTGCAGCCCATGGAACTATACAAACGGTTTCTACTAATCACGTTGGGGACGGGTTCAAACAAGATTGAACTGAAATACAGTGCTAAGATGGCTTCCAAGTGGGGGATTCTGAGCTGGTTATACGATGATGGTGCTTCTCCTTTACTGAATTGTTATAATAAAGCAAGTTCGGAAATGGTTGATTACCACAACTGTGTGGTTTTCCAAGCTCTTCAATCTGAAAACAACTACCTCAGGATTGATGAGGACACACTAACGGGAAATTTATCTTCAGTGGATAAAGCTACAAACGAGAACTTGGAAAATCTAATGGAAGTTGGAAAGCAATTGCTTAAGAAACAAGTTTCACGTGTGAATGTGGATACAGGTCTATATGAACCAGTTGAAAATGAGGGCACCAATGAAGAAGCACTTCAAAGGTTTGCTAAATTACTTTCGGATGAAAAGAAATACAGGGAGTCGAAATCACCAAGGCCAAAGACAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0033993 GO:0042221 GO:0044424 GO:0044464 GO:0047372 GO:0050896 GO:0052689 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

407

Amino Acids

45.22

Weight (kDa)

5.84

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	24 - 229	1.3e-24	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37050 AT4G37060 AT4G37060 AT4G37070 AT4G37070 AT4G37070 AT4G37070
fragaria_vesca	FvH4_1g15780 FvH4_1g15780 FvH4_1g15780 FvH4_1g15780
malus_domestica	MD02G1169600.v1.1
prunus_persica	Prupe.7G135600_v2.0.a1 Prupe.7G135600_v2.0.a1
pyrus_communis	pycom02g13660
rosa_chinensis	RchiOBHm_Chr2g0105061
rosa_laevigata	RLG00000017398
rosa_multiflora	Rmu_sc0005160.1_g000011
rosa_roxburghii	Rroxscaffold_2G00138460
rosa_rugosa	Rorug02G0125900
rosa_samantha	Rh2AG176700 Rh2BG184600 Rh2CG181000 Rh2DG182800 Rh3CG284400 Rh5CG540900 Rh6DG471400 Rh6DG471600
rosa_wichuraiana	Rw2G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	62, 891
AccB1I	GGYRCC	1 cut(s)	1130
AciI	CCGC	3 cut(s)	84, 257, 660
AcoI	YGGCCR	2 cut(s)	222, 657
AcsI	RAATTY	2 cut(s)	632, 997
AcuI	CTGAAG	2 cut(s)	125, 990
AcvI	CACGTG	1 cut(s)	1085
AfaI	GTAC	2 cut(s)	10, 380
AfiI	CCNNNNNNNGG	3 cut(s)	50, 51, 837
AflII	CTTAAG	1 cut(s)	1067
AflIII	ACRYGT	1 cut(s)	1084
AgsI	TTSAA	6 cut(s)	131, 792, 803, 950, 1121, 1151
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	106
AleI	CACNNNNGTG	1 cut(s)	927
AluBI	AGCT	5 cut(s)	403, 522, 849, 944, 1019
AluI	AGCT	5 cut(s)	403, 522, 849, 944, 1019
AoxI	GGCC	4 cut(s)	222, 254, 657, 1208
ApeKI	GCWGC	4 cut(s)	233, 266, 572, 739
ApoI	RAATTY	2 cut(s)	632, 997
Asp700I	GAANNNNTTC	1 cut(s)	1146
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	167, 526, 1194
AvaII	GGWCC	1 cut(s)	371
AxyI	CCTNAGG	1 cut(s)	968
BaeGI	GKGCMC	1 cut(s)	1133
BanI	GGYRCC	1 cut(s)	1130
BbrPI	CACGTG	1 cut(s)	1085
BbvCI	CCTCAGC	1 cut(s)	568
BbvI	GCAGC	4 cut(s)	245, 253, 584, 751
BccI	CCATC	6 cut(s)	146, 377, 618, 641, 817, 857
BceAI	ACGGC	2 cut(s)	97, 237
BcgI	CGANNNNNNTGC	4 cut(s)	173, 207, 848, 882
BciT130I	CCWGG	1 cut(s)	108
BciVI	GTATCC	1 cut(s)	1090
BfaI	CTAG	1 cut(s)	149
BfoI	RGCGCY	1 cut(s)	578
BfrI	CTTAAG	1 cut(s)	1067
BfuI	GTATCC	1 cut(s)	1090
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	6 cut(s)	234, 257, 267, 573, 660, 740
BlsI	GCNGC	6 cut(s)	235, 258, 268, 574, 661, 741
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	565, 1132
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	2 cut(s)	151, 567
BplI	GAGNNNNNCTC	2 cut(s)	102, 134
BpmI	CTGGAG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	568
BsaAI	YACGTR	1 cut(s)	1085
BsaJI	CCNNGG	3 cut(s)	106, 744, 1205
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 51, 837
Bse1I	ACTGG	2 cut(s)	527, 1115
Bse21I	CCTNAGG	1 cut(s)	968
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	106, 744, 1205
BseGI	GGATG	2 cut(s)	102, 1180
BseLI	CCNNNNNNNGG	3 cut(s)	50, 51, 837
BseMII	CTCAG	4 cut(s)	354, 582, 836, 982
BseNI	ACTGG	2 cut(s)	527, 1115
BseSI	GKGCMC	1 cut(s)	1133
BseXI	GCAGC	4 cut(s)	245, 253, 584, 751
BseYI	CCCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	758
BshFI	GGCC	4 cut(s)	224, 256, 659, 1210
BshNI	GGYRCC	1 cut(s)	1130
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	3 cut(s)	211, 437, 796
BslI	CCNNNNNNNGG	3 cut(s)	50, 51, 837
BsmFI	GGGAC	3 cut(s)	211, 437, 796
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	4 cut(s)	224, 256, 659, 1210
Bsp1286I	GDGCHC	1 cut(s)	1133
Bsp143I	GATC	1 cut(s)	349
Bsp19I	CCATGG	1 cut(s)	744
BspACI	CCGC	3 cut(s)	84, 257, 660
BspANI	GGCC	4 cut(s)	224, 256, 659, 1210
BspCNI	CTCAG	4 cut(s)	353, 581, 837, 981
BspLI	GGNNCC	2 cut(s)	565, 1132
BspQI	GCTCTTC	1 cut(s)	951
BspT107I	GGYRCC	1 cut(s)	1130
BspTI	CTTAAG	1 cut(s)	1067
BsrI	ACTGG	2 cut(s)	527, 1115
BssECI	CCNNGG	3 cut(s)	106, 744, 1205
BssMI	GATC	1 cut(s)	349
BssT1I	CCWWGG	2 cut(s)	744, 1205
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	4 cut(s)	67, 762, 815, 929
Bst6I	CTCTTC	1 cut(s)	951
BstAFI	CTTAAG	1 cut(s)	1067
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	1085
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	6 cut(s)	71, 340, 568, 819, 845, 968
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	2 cut(s)	102, 1180
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 170, 230, 680, 824
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstSLI	GKGCMC	1 cut(s)	1133
BstV1I	GCAGC	4 cut(s)	245, 253, 584, 751
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
Bsu36I	CCTNAGG	1 cut(s)	968
BsuI	GTATCC	1 cut(s)	1090
BsuRI	GGCC	4 cut(s)	224, 256, 659, 1210
BtgI	CCRYGG	1 cut(s)	744
BtgZI	GCGATG	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	102, 1180
BtsIMutI	CAGTG	2 cut(s)	820, 1014
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	9, 379
CviAII	CATG	2 cut(s)	226, 745
CviQI	GTAC	2 cut(s)	9, 379
DdeI	CTNAG	6 cut(s)	71, 340, 568, 819, 845, 968
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	2 cut(s)	222, 657
Eam1104I	CTCTTC	1 cut(s)	951
EarI	CTCTTC	1 cut(s)	951
EciI	GGCGGA	1 cut(s)	99
Eco130I	CCWWGG	2 cut(s)	744, 1205
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	2 cut(s)	125, 990
Eco72I	CACGTG	1 cut(s)	1085
Eco81I	CCTNAGG	1 cut(s)	968
EcoRII	CCWGG	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	744, 1205
ErhI	CCWWGG	2 cut(s)	744, 1205
FaeI	CATG	2 cut(s)	229, 748
FalI	AAGNNNNNCTT	2 cut(s)	1131, 1163
FaqI	GGGAC	3 cut(s)	211, 437, 796
FatI	CATG	2 cut(s)	225, 744
Fnu4HI	GCNGC	6 cut(s)	234, 257, 267, 573, 660, 740
FokI	GGATG	2 cut(s)	89, 1187
Fsp4HI	GCNGC	6 cut(s)	234, 257, 267, 573, 660, 740
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	6 cut(s)	234, 257, 267, 573, 660, 740
GsaI	CCCAGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	4 cut(s)	224, 256, 659, 1210
HapII	CCGG	1 cut(s)	671
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	2 cut(s)	229, 748
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HinfI	GANTC	6 cut(s)	55, 99, 131, 718, 841, 1193
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	3 cut(s)	167, 526, 1194
Hpy188I	TCNGA	7 cut(s)	550, 563, 733, 846, 907, 955, 1174
Hpy188III	TCNNGA	6 cut(s)	128, 143, 478, 532, 722, 970
Hpy99I	CGWCG	2 cut(s)	188, 245
HpyCH4III	ACNGT	4 cut(s)	67, 762, 815, 929
HpyCH4IV	ACGT	4 cut(s)	186, 453, 776, 1084
HpyCH4V	TGCA	5 cut(s)	164, 173, 558, 593, 739
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 170, 230, 680, 824
HpyF3I	CTNAG	6 cut(s)	71, 340, 568, 819, 845, 968
HpySE526I	ACGT	4 cut(s)	186, 453, 776, 1084
Hsp92II	CATG	2 cut(s)	229, 748
HspAI	GCGC	1 cut(s)	575
Kzo9I	GATC	1 cut(s)	349
LguI	GCTCTTC	1 cut(s)	951
Lsp1109I	GCAGC	4 cut(s)	245, 253, 584, 751
LweI	GCATC	2 cut(s)	151, 567
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	4 cut(s)	186, 453, 776, 1084
MaeIII	GTNAC	3 cut(s)	343, 514, 694
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	6 cut(s)	107, 170, 641, 938, 996, 1151
MfeI	CAATTG	1 cut(s)	1061
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	1133
MluCI	AATT	8 cut(s)	90, 216, 632, 705, 883, 997, 1061, 1163
MlyI	GAGTC	1 cut(s)	1202
MmeI	TCCRAC	2 cut(s)	488, 1033
MroXI	GAANNNNTTC	1 cut(s)	1146
MseI	TTAA	3 cut(s)	357, 636, 1068
MslI	CAYNNNNRTG	1 cut(s)	927
MspCI	CTTAAG	1 cut(s)	1067
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	1 cut(s)	108
MunI	CAATTG	1 cut(s)	1061
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	5 cut(s)	81, 170, 230, 680, 824
NcoI	CCATGG	1 cut(s)	744
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	2 cut(s)	229, 748
NlaIV	GGNNCC	2 cut(s)	565, 1132
NmuCI	GTSAC	2 cut(s)	514, 694
OliI	CACNNNNGTG	1 cut(s)	927
PciSI	GCTCTTC	1 cut(s)	951
PctI	GAATGC	1 cut(s)	541
PdmI	GAANNNNTTC	1 cut(s)	1146
PfeI	GAWTC	5 cut(s)	55, 99, 131, 718, 841
PkrI	GCNGC	6 cut(s)	235, 258, 268, 574, 661, 741
PleI	GAGTC	1 cut(s)	1201
PmaCI	CACGTG	1 cut(s)	1085
PmlI	CACGTG	1 cut(s)	1085
PpsI	GAGTC	1 cut(s)	1201
Ppu21I	YACGTR	1 cut(s)	1085
PsiI	TTATAA	2 cut(s)	62, 891
Psp6I	CCWGG	1 cut(s)	106
PspCI	CACGTG	1 cut(s)	1085
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	565, 1132
PspPI	GGNCC	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	2 cut(s)	10, 380
RsaNI	GTAC	2 cut(s)	9, 379
RseI	CAYNNNNRTG	1 cut(s)	927
SapI	GCTCTTC	1 cut(s)	951
SaqAI	TTAA	3 cut(s)	357, 636, 1068
SatI	GCNGC	6 cut(s)	234, 257, 267, 573, 660, 740
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	1 cut(s)	1202
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	1133
SfaNI	GCATC	2 cut(s)	151, 567
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	927
SmlI	CTYRAG	1 cut(s)	1067
SmoI	CTYRAG	1 cut(s)	1067
Sse9I	AATT	8 cut(s)	90, 216, 632, 705, 883, 997, 1061, 1163
SsiI	CCGC	3 cut(s)	84, 257, 660
SspI	AATATT	1 cut(s)	312
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	2 cut(s)	744, 1205
TaaI	ACNGT	4 cut(s)	67, 762, 815, 929
TaiI	ACGT	4 cut(s)	189, 456, 779, 1087
TaqI	TCGA	3 cut(s)	183, 471, 1196
TasI	AATT	8 cut(s)	90, 216, 632, 705, 883, 997, 1061, 1163
TatI	WGTACW	1 cut(s)	8
TauI	GCSGC	2 cut(s)	259, 662
TfiI	GAWTC	5 cut(s)	55, 99, 131, 718, 841
Tru1I	TTAA	3 cut(s)	357, 636, 1068
Tru9I	TTAA	3 cut(s)	357, 636, 1068
TscAI	CASTG	2 cut(s)	820, 1014
TseFI	GTSAC	2 cut(s)	514, 694
TseI	GCWGC	4 cut(s)	233, 266, 572, 739
Tsp45I	GTSAC	2 cut(s)	514, 694
TspDTI	ATGAA	3 cut(s)	1125, 1152, 1191
TspRI	CASTG	2 cut(s)	820, 1014
Vha464I	CTTAAG	1 cut(s)	1067
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	2 cut(s)	632, 997
XmnI	GAANNNNTTC	1 cut(s)	1146
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.