Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005216

Physical Location & Seq

Genomic Coordinates Forward (+)

10248734 .. 10251421

Gene Structure 2688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13660.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGAGAAAAGAAGCTCAACCCCAAGATATGGAAACCTCGTAACGATTCTCAGTATAGACGGGGGAGGAATTAGAGGGATCATCCCTGGTGTTCTTCTCACTTACCTTGAATCTGAACTTCAGAAACTAGATGGTGAAGATGCAAGGCTTGCAGATTATTTTGACGTCATTTCTGGGACAAGTACAGGCGGTCTAATTGCGACCATGTTAGTAGCTCCAAACGAAAACAACAGACCATTATTCGCTGCAAAAGACATTGTCCCATTTTACCATTCCCACTGCCCTAAAATTTTCCCACAATCAAGTGGACTTTGTACCACAGTTAAAGATCTAGTGAAAGCTCTAACAGGACCAAAGTATGATGGAAAGTATTTGCACAAGCTTGTAAGAGAGATAATAGGAGACAAAAGGTTGGACCAAACCTTGACGAACCTGGTTGTCCCAACTTTTGACATCAAGATACTTCTGCCTGTCATATTTTCGTCTTATCAGCTAAGTGCTATTCTCATGATCAAGGTGTCAAGTCGTCCAGTGCTGAATGCCAGACTTTCAGACATTTGCATTGGTACCTCAGCAGCACCAACTTACCTTCCTGCATACTATTTTGAGAACAAGGATCAACAAGGAGAATCCAAAGAGTTCAACCTCATCGATGGTGGCATAGCCGCGAATAATCCGGTGATGCTCTTGCACAATAATTTGCAGAATGTAAAGTTTTCATTGATTGCCATTAGTGAAGTGATAAAACAAATTACGAGCCAGAATCAAGATTACTTGGAGATTGAGCCAAAGGACTTGTATGATCGTTTCCTACTGATTTCACTGGGAACGGGTTCGGACAGAAGTGAACTCAAATACAATGCCAAGAAAGCTTCAAAATGGAATGTTATAAGCTGGTTGTACACTAATGGGTCAACTCCTTTGTTGGATTGCTTTGATGAAGCAACTTGCGATATGGTTGATTACCATAACTCTGCGGTTTTCCAAGCTCTCCGTTCCGAACAGAACTACCTCAGAATTGACGTAAGTTTGAAATATCTGATTAAAAACGAAAAACGAAAAACGAAATGGTATCAAACGAAGGGAGATGTAGCTTCAGTTGATAAAGCTACACGGGAAAACTTGGAAAATCTAGTGGAAGTGGGAAACAAATTACTCAAGAAACCAGTTTGTCGCGTGAATTTGGATACTTGTCTCTATGAACCAGTTGAAGATGAGGGCGCAAATGAAGAAGCACTTCAGAGGTTTGCAAAGTTACTGTCGGATGAAAAGAAGCTTCGGGAGTCAAAATCATCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0033993 GO:0042221 GO:0044424 GO:0044464 GO:0047372 GO:0050896 GO:0052689 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

434

Amino Acids

48.55

Weight (kDa)

6.57

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37050 AT4G37060 AT4G37060 AT4G37070 AT4G37070 AT4G37070 AT4G37070
fragaria_vesca	FvH4_1g15780 FvH4_1g15780 FvH4_1g15780 FvH4_1g15780
malus_domestica	MD02G1169600.v1.1
prunus_persica	Prupe.7G135600_v2.0.a1 Prupe.7G135600_v2.0.a1
pyrus_communis	pycom02g13660
rosa_chinensis	RchiOBHm_Chr2g0105061
rosa_laevigata	RLG00000017398
rosa_multiflora	Rmu_sc0005160.1_g000011
rosa_roxburghii	Rroxscaffold_2G00138460
rosa_rugosa	Rorug02G0125900
rosa_samantha	Rh2AG176700 Rh2BG184600 Rh2CG181000 Rh2DG182800 Rh3CG284400 Rh5CG540900 Rh6DG471400 Rh6DG471600
rosa_wichuraiana	Rw2G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	890
AatII	GACGTC	1 cut(s)	168
Acc65I	GGTACC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccII	CGCG	2 cut(s)	668, 1176
AciI	CCGC	3 cut(s)	189, 666, 977
AclWI	GGATC	2 cut(s)	86, 624
AcsI	RAATTY	2 cut(s)	288, 1180
AcuI	CTGAAG	3 cut(s)	104, 1080, 1223
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	4 cut(s)	184, 316, 568, 902
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	5 cut(s)	110, 643, 876, 1033, 1211
AjnI	CCWGG	2 cut(s)	85, 432
Alw26I	GTCTC	2 cut(s)	396, 1199
AlwI	GGATC	2 cut(s)	86, 624
ApeKI	GCWGC	2 cut(s)	245, 575
ApoI	RAATTY	2 cut(s)	288, 1180
ArsI	GACNNNNNNTTYG	2 cut(s)	1244, 1276
Asp700I	GAANNNNTTC	2 cut(s)	832, 1236
Asp718I	GGTACC	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	1223
AspS9I	GGNCC	2 cut(s)	350, 415
AsuHPI	GGTGA	2 cut(s)	146, 691
AvaII	GGWCC	2 cut(s)	350, 415
BanI	GGYRCC	1 cut(s)	566
BbvCI	CCTCAGC	1 cut(s)	571
BbvI	GCAGC	2 cut(s)	232, 587
BccI	CCATC	3 cut(s)	125, 356, 647
BciT130I	CCWGG	2 cut(s)	87, 434
BciVI	GTATCC	1 cut(s)	1180
BclI	TGATCA	1 cut(s)	510
BcoDI	GTCTC	2 cut(s)	396, 1199
BfaI	CTAG	3 cut(s)	128, 332, 1133
BfuI	GTATCC	1 cut(s)	1180
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	3 cut(s)	246, 576, 666
BlsI	GCNGC	3 cut(s)	247, 577, 667
Bme1390I	CCNGG	2 cut(s)	87, 434
Bme18I	GGWCC	2 cut(s)	350, 415
BmgT120I	GGNCC	2 cut(s)	350, 415
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	2 cut(s)	87, 434
BmrI	ACTGGG	1 cut(s)	833
BmsI	GCATC	2 cut(s)	130, 672
BmuI	ACTGGG	1 cut(s)	833
Bpu10I	CCTNAGC	1 cut(s)	571
BpuEI	CTTGAG	1 cut(s)	1142
Bsa29I	ATCGAT	1 cut(s)	651
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	4 cut(s)	530, 828, 1166, 1205
BseBI	CCWGG	2 cut(s)	87, 434
BseCI	ATCGAT	1 cut(s)	651
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	81, 1270
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	3 cut(s)	64, 585, 1027
BseNI	ACTGG	4 cut(s)	530, 828, 1166, 1205
BseXI	GCAGC	2 cut(s)	232, 587
Bsh1236I	CGCG	2 cut(s)	668, 1176
BshNI	GGYRCC	1 cut(s)	566
BshVI	ATCGAT	1 cut(s)	651
BsiSI	CCGG	1 cut(s)	677
BslFI	GGGAC	3 cut(s)	190, 245, 425
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	396, 1199
BsmFI	GGGAC	3 cut(s)	190, 245, 425
BsmI	GAATGC	1 cut(s)	544
Bsp1407I	TGTACA	1 cut(s)	900
Bsp143I	GATC	5 cut(s)	78, 328, 510, 616, 802
BspACI	CCGC	3 cut(s)	189, 666, 977
BspCNI	CTCAG	3 cut(s)	63, 584, 1026
BspDI	ATCGAT	1 cut(s)	651
BspFNI	CGCG	2 cut(s)	668, 1176
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	568
BspPI	GGATC	2 cut(s)	86, 624
BspT107I	GGYRCC	1 cut(s)	566
BsrGI	TGTACA	1 cut(s)	900
BsrI	ACTGG	4 cut(s)	530, 828, 1166, 1205
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	5 cut(s)	78, 328, 510, 616, 802
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	87, 434
Bst4CI	ACNGT	3 cut(s)	322, 1260, 1299
BstACI	GRCGYC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstAUI	TGTACA	1 cut(s)	900
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	4 cut(s)	50, 494, 571, 1013
BstF5I	GGATG	2 cut(s)	81, 1270
BstFNI	CGCG	2 cut(s)	668, 1176
BstHHI	GCGC	1 cut(s)	1223
BstKTI	GATC	5 cut(s)	81, 331, 513, 619, 805
BstMAI	GTCTC	2 cut(s)	396, 1199
BstMBI	GATC	5 cut(s)	78, 328, 510, 616, 802
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 869
BstNI	CCWGG	2 cut(s)	87, 434
BstSCI	CCNGG	2 cut(s)	85, 432
BstUI	CGCG	2 cut(s)	668, 1176
BstV1I	GCAGC	2 cut(s)	232, 587
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
Bsu15I	ATCGAT	1 cut(s)	651
BsuI	GTATCC	1 cut(s)	1180
BsuTUI	ATCGAT	1 cut(s)	651
BtsCI	GGATG	2 cut(s)	81, 1270
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	3 cut(s)	277, 537, 821
Cac8I	GCNNGC	1 cut(s)	150
CciI	TCATGA	1 cut(s)	507
CfoI	GCGC	1 cut(s)	1223
Cfr13I	GGNCC	2 cut(s)	350, 415
ClaI	ATCGAT	1 cut(s)	651
CsiI	ACCWGGT	1 cut(s)	432
Csp6I	GTAC	4 cut(s)	183, 315, 567, 901
CviAII	CATG	2 cut(s)	205, 508
CviQI	GTAC	4 cut(s)	183, 315, 567, 901
DdeI	CTNAG	4 cut(s)	50, 494, 571, 1013
DpnI	GATC	5 cut(s)	80, 330, 512, 618, 804
DpnII	GATC	5 cut(s)	78, 328, 510, 616, 802
Eco47I	GGWCC	2 cut(s)	350, 415
Eco57I	CTGAAG	3 cut(s)	104, 1080, 1223
EcoRII	CCWGG	2 cut(s)	85, 432
FaeI	CATG	2 cut(s)	208, 511
FalI	AAGNNNNNCTT	2 cut(s)	1221, 1253
FaqI	GGGAC	3 cut(s)	190, 245, 425
FatI	CATG	2 cut(s)	204, 507
FbaI	TGATCA	1 cut(s)	510
Fnu4HI	GCNGC	3 cut(s)	246, 576, 666
FokI	GGATG	2 cut(s)	68, 1277
Fsp4HI	GCNGC	3 cut(s)	246, 576, 666
FspBI	CTAG	3 cut(s)	128, 332, 1133
GlaI	GCGC	1 cut(s)	1222
GluI	GCNGC	3 cut(s)	246, 576, 666
HapII	CCGG	1 cut(s)	677
HhaI	GCGC	1 cut(s)	1223
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	208, 511
Hin6I	GCGC	1 cut(s)	1221
HinP1I	GCGC	1 cut(s)	1221
HincII	GTYRAC	1 cut(s)	915
HindII	GTYRAC	1 cut(s)	915
HindIII	AAGCTT	3 cut(s)	380, 870, 1274
HinfI	GANTC	5 cut(s)	46, 110, 629, 763, 1283
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	2 cut(s)	146, 691
Hpy166II	GTNNAC	4 cut(s)	308, 848, 903, 915
Hpy188I	TCNGA	9 cut(s)	115, 123, 553, 838, 1000, 1016, 1041, 1242, 1264
Hpy188III	TCNNGA	5 cut(s)	457, 508, 767, 1159, 1280
Hpy8I	GTNNAC	4 cut(s)	308, 848, 903, 915
HpyAV	CCTTC	2 cut(s)	599, 1075
HpyCH4III	ACNGT	3 cut(s)	322, 1260, 1299
HpyCH4IV	ACGT	2 cut(s)	165, 1023
HpyCH4V	TGCA	9 cut(s)	143, 152, 248, 376, 561, 596, 691, 703, 1250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 869
HpyF3I	CTNAG	4 cut(s)	50, 494, 571, 1013
HpySE526I	ACGT	2 cut(s)	165, 1023
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	208, 511
HspAI	GCGC	1 cut(s)	1221
KpnI	GGTACC	1 cut(s)	570
Ksp22I	TGATCA	1 cut(s)	510
Kzo9I	GATC	5 cut(s)	78, 328, 510, 616, 802
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	2 cut(s)	232, 587
LweI	GCATC	2 cut(s)	130, 672
MabI	ACCWGGT	1 cut(s)	432
MaeI	CTAG	3 cut(s)	128, 332, 1133
MaeII	ACGT	2 cut(s)	165, 1023
MaeIII	GTNAC	2 cut(s)	40, 1254
MalI	GATC	5 cut(s)	80, 330, 512, 618, 804
MboI	GATC	5 cut(s)	78, 328, 510, 616, 802
MboII	GAAGA	4 cut(s)	86, 149, 1223, 1241
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	8 cut(s)	69, 195, 288, 697, 750, 1017, 1151, 1180
MlyI	GAGTC	1 cut(s)	1292
MmeI	TCCRAC	3 cut(s)	393, 906, 1242
MnlI	CCTC	8 cut(s)	47, 59, 68, 580, 656, 1022, 1210, 1236
MroXI	GAANNNNTTC	2 cut(s)	832, 1236
MseI	TTAA	2 cut(s)	324, 1044
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	2 cut(s)	87, 434
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	2 cut(s)	87, 434
MvnI	CGCG	2 cut(s)	668, 1176
MwoI	GCNNNNNNNGC	2 cut(s)	149, 869
NdeII	GATC	5 cut(s)	78, 328, 510, 616, 802
NlaIII	CATG	2 cut(s)	208, 511
NlaIV	GGNNCC	1 cut(s)	568
PagI	TCATGA	1 cut(s)	507
PctI	GAATGC	1 cut(s)	544
PdmI	GAANNNNTTC	2 cut(s)	832, 1236
PfeI	GAWTC	4 cut(s)	46, 110, 629, 763
PflFI	GACNNNGTC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	247, 577, 667
PleI	GAGTC	1 cut(s)	1291
PpsI	GAGTC	1 cut(s)	1291
PsiI	TTATAA	1 cut(s)	890
Psp6I	CCWGG	2 cut(s)	85, 432
PspGI	CCWGG	2 cut(s)	85, 432
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	2 cut(s)	350, 415
PsuI	RGATCY	1 cut(s)	328
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	4 cut(s)	184, 316, 568, 902
RsaNI	GTAC	4 cut(s)	183, 315, 567, 901
SaqAI	TTAA	2 cut(s)	324, 1044
SatI	GCNGC	3 cut(s)	246, 576, 666
Sau3AI	GATC	5 cut(s)	78, 328, 510, 616, 802
Sau96I	GGNCC	2 cut(s)	350, 415
SchI	GAGTC	1 cut(s)	1292
ScrFI	CCNGG	2 cut(s)	87, 434
SexAI	ACCWGGT	1 cut(s)	432
SfaNI	GCATC	2 cut(s)	130, 672
SinI	GGWCC	2 cut(s)	350, 415
SmlI	CTYRAG	1 cut(s)	1157
SmoI	CTYRAG	1 cut(s)	1157
Sse9I	AATT	8 cut(s)	69, 195, 288, 697, 750, 1017, 1151, 1180
SsiI	CCGC	3 cut(s)	189, 666, 977
SspMI	CTAG	3 cut(s)	128, 332, 1133
StyD4I	CCNGG	2 cut(s)	85, 432
TaaI	ACNGT	3 cut(s)	322, 1260, 1299
TaiI	ACGT	2 cut(s)	168, 1026
TaqI	TCGA	1 cut(s)	651
TasI	AATT	8 cut(s)	69, 195, 288, 697, 750, 1017, 1151, 1180
TatI	WGTACW	2 cut(s)	182, 900
TauI	GCSGC	1 cut(s)	668
TfiI	GAWTC	4 cut(s)	46, 110, 629, 763
Tru1I	TTAA	2 cut(s)	324, 1044
Tru9I	TTAA	2 cut(s)	324, 1044
TscAI	CASTG	3 cut(s)	284, 537, 828
TseI	GCWGC	2 cut(s)	245, 575
TspDTI	ATGAA	5 cut(s)	708, 954, 1215, 1242, 1281
TspGWI	ACGGA	1 cut(s)	983
TspRI	CASTG	3 cut(s)	284, 537, 828
Tth111I	GACNNNGTC	1 cut(s)	257
Van91I	CCANNNNNTGG	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	350, 415
XapI	RAATTY	2 cut(s)	288, 1180
XmnI	GAANNNNTTC	2 cut(s)	832, 1236
XspI	CTAG	3 cut(s)	128, 332, 1133
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.