Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005216

Physical Location & Seq

Genomic Coordinates Reverse (-)

15291930 .. 15294385

Gene Structure 2456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G135600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGAAAATATAAGCTCATCTCTAAATGTCCTTCAGCCTCCAAAATATGGCAACCTCATAACAGTTCTCAGTATAGATGGAGGAGGAATTAGAGGAATCATCCCCGGTGTTCTTCTTGCTTACCTTGAATCTCAACTTCAGGAACTAGATGGTGAAGATGCAAGGCTTGCAGATTACTTTGACGTTATTTCTGGGACAAGCACAGGTGGTCTAATTGCGACTATGCTAGCAGCACCTAATGACAACAATAGACCATTATACGCTGCCAAAGATATTGTCCCATTTTACCTTGACAACTGTCCAAAAATTTTCCCACAATCAAGCGGATTGTGTGCCGCAGTTGTAGATCTAGTTAAAGTTCTAACAGGACCCAAGTATGATGGAAAGTATTTGCACAAGCTAATAAGAAATATAGTAGGGGACAAAAGGTTGGACCAAACCTTGACAAACGTGGTTATTCCAACGTTTGACGTCAAGAAACTTCTGCCTGTCATATTTTCCTCTTATCAGGTGACAAGCCGTCCAGTGTTGAATGCTAAACTTTCAGACATTTGCATTGGTACCTCAGCAGCACCAACTTTGCTCCCTGCCCACTATTTTGAAAACAATGATCAACAAGGGGAACCAAAAGAGTTCAACCTCATCGATGGTGGCGTGGCCGCTAATAATCCGGCTTCGGTTGCCATTAGTGAAGTGATAAAACAAACTGAGAAGCAAAATCCAGATTTCATGGAGATTAAGCCCATGGAGTTATACGATCGTCTTTTGTTGGTTTCGTTTGGGACAGGCTCAAACAGAAGTGAGCTGAGGTACAATGCTAAGAAGGTTTCCAAATGGGGTGTTATAGGGTGGTTATACGAGGATGGGTCAAGTCCTTTATTGGAATGCTTTGATGAAGCAGGTGCTTGTATGGTTGACTACCACAACTCTGTGGTTTTCCAAGCCCTCCATTCTGAACAGAACTACCTCAGAATTGAGGAGGACACGCTAGAGGGAAATCTAGCTTCAGCTGATAAAGCTACCAAGGAGAACTTGGAAAATCTAGTGGAAGTTGGGAATACATTGCTCCAGAAACCAATTTCAACCATGGATTTGGATACGGGTCTCTACGAACCAGTTGAAAATGGTGGCACCAATCAGCAAGCACTTCAAAGGTTTGCAAAATTACTTTCGGACGAAAAGAAGCTCCGGGAGTCAAAATCACCAAAATCTGACATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0033993 GO:0042221 GO:0044424 GO:0044464 GO:0047372 GO:0050896 GO:0052689 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

408

Amino Acids

44.66

Weight (kDa)

4.89

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37050 AT4G37060 AT4G37060 AT4G37070 AT4G37070 AT4G37070 AT4G37070
fragaria_vesca	FvH4_1g15780 FvH4_1g15780 FvH4_1g15780 FvH4_1g15780
malus_domestica	MD02G1169600.v1.1
prunus_persica	Prupe.7G135600_v2.0.a1 Prupe.7G135600_v2.0.a1
pyrus_communis	pycom02g13660
rosa_chinensis	RchiOBHm_Chr2g0105061
rosa_laevigata	RLG00000017398
rosa_multiflora	Rmu_sc0005160.1_g000011
rosa_roxburghii	Rroxscaffold_2G00138460
rosa_rugosa	Rorug02G0125900
rosa_samantha	Rh2AG176700 Rh2BG184600 Rh2CG181000 Rh2DG182800 Rh3CG284400 Rh5CG540900 Rh6DG471400 Rh6DG471600
rosa_wichuraiana	Rw2G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	890
AatII	GACGTC	1 cut(s)	474
Acc36I	ACCTGC	1 cut(s)	890
Acc65I	GGTACC	1 cut(s)	560
AccB1I	GGYRCC	2 cut(s)	560, 1130
AccB7I	CCANNNNNTGG	1 cut(s)	47
AciI	CCGC	3 cut(s)	324, 336, 660
AclI	AACGTT	1 cut(s)	464
AcoI	YGGCCR	1 cut(s)	657
AcsI	RAATTY	1 cut(s)	306
AcuI	CTGAAG	3 cut(s)	17, 122, 990
AcyI	GRCGYC	1 cut(s)	471
AfaI	GTAC	2 cut(s)	562, 812
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	7 cut(s)	128, 532, 602, 637, 1083, 1121, 1151
AhdI	GACNNNNNGTC	1 cut(s)	519
AluBI	AGCT	7 cut(s)	15, 400, 805, 1004, 1010, 1019, 1186
AluI	AGCT	7 cut(s)	15, 400, 805, 1004, 1010, 1019, 1186
Alw26I	GTCTC	1 cut(s)	1109
AoxI	GGCC	1 cut(s)	657
ApeKI	GCWGC	3 cut(s)	230, 263, 569
ApoI	RAATTY	1 cut(s)	306
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
Asp718I	GGTACC	1 cut(s)	560
AspS9I	GGNCC	2 cut(s)	368, 433
AsuC2I	CCSGG	2 cut(s)	105, 1190
AsuHPI	GGTGA	3 cut(s)	164, 523, 1194
AsuNHI	GCTAGC	1 cut(s)	226
AvaII	GGWCC	2 cut(s)	368, 433
BanI	GGYRCC	2 cut(s)	560, 1130
BbvCI	CCTCAGC	2 cut(s)	565, 806
BbvI	GCAGC	3 cut(s)	242, 250, 581
BccI	CCATC	5 cut(s)	71, 143, 374, 641, 857
BceAI	ACGGC	1 cut(s)	504
BciVI	GTATCC	1 cut(s)	1090
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	2 cut(s)	105, 1190
BcoDI	GTCTC	1 cut(s)	1109
BfaI	CTAG	6 cut(s)	146, 227, 350, 989, 1001, 1043
BfuAI	ACCTGC	1 cut(s)	890
BfuI	GTATCC	1 cut(s)	1090
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	5 cut(s)	231, 264, 336, 570, 660
BlsI	GCNGC	5 cut(s)	232, 265, 337, 571, 661
Bme1390I	CCNGG	2 cut(s)	105, 1190
Bme18I	GGWCC	2 cut(s)	368, 433
BmeRI	GACNNNNNGTC	1 cut(s)	519
BmgT120I	GGNCC	2 cut(s)	368, 433
BmiI	GGNNCC	4 cut(s)	370, 562, 624, 1132
BmrFI	CCNGG	2 cut(s)	105, 1190
BmsI	GCATC	1 cut(s)	148
BmtI	GCTAGC	1 cut(s)	230
BoxI	GACNNNNGTC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	1052
Bpu10I	CCTNAGC	2 cut(s)	565, 806
BpuMI	CCSGG	2 cut(s)	105, 1190
Bsa29I	ATCGAT	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	1109
BsaJI	CCNNGG	4 cut(s)	103, 744, 1023, 1086
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	524, 1115
Bse3DI	GCAATG	1 cut(s)	1061
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	4 cut(s)	103, 744, 1023, 1086
BseGI	GGATG	2 cut(s)	99, 868
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	1061
BseMII	CTCAG	5 cut(s)	82, 579, 699, 797, 982
BseNI	ACTGG	2 cut(s)	524, 1115
BseRI	GAGGAG	2 cut(s)	96, 992
BseXI	GCAGC	3 cut(s)	242, 250, 581
Bsh1285I	CGRYCG	1 cut(s)	760
BshFI	GGCC	1 cut(s)	659
BshNI	GGYRCC	2 cut(s)	560, 1130
BshVI	ATCGAT	1 cut(s)	645
BsiEI	CGRYCG	1 cut(s)	760
BsiSI	CCGG	3 cut(s)	105, 671, 1189
BslFI	GGGAC	4 cut(s)	208, 263, 434, 796
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	1109
BsmFI	GGGAC	4 cut(s)	208, 263, 434, 796
BsmI	GAATGC	2 cut(s)	538, 890
BsnI	GGCC	1 cut(s)	659
Bso31I	GGTCTC	1 cut(s)	1109
Bsp143I	GATC	3 cut(s)	346, 610, 757
Bsp19I	CCATGG	2 cut(s)	744, 1086
BspACI	CCGC	3 cut(s)	324, 336, 660
BspANI	GGCC	1 cut(s)	659
BspCNI	CTCAG	5 cut(s)	81, 578, 700, 798, 981
BspDI	ATCGAT	1 cut(s)	645
BspLI	GGNNCC	4 cut(s)	370, 562, 624, 1132
BspMI	ACCTGC	1 cut(s)	890
BspOI	GCTAGC	1 cut(s)	230
BspT107I	GGYRCC	2 cut(s)	560, 1130
BspTNI	GGTCTC	1 cut(s)	1109
BsrDI	GCAATG	1 cut(s)	1061
BsrI	ACTGG	2 cut(s)	524, 1115
BssECI	CCNNGG	4 cut(s)	103, 744, 1023, 1086
BssMI	GATC	3 cut(s)	346, 610, 757
BssNI	GRCGYC	1 cut(s)	471
BssT1I	CCWWGG	3 cut(s)	744, 1023, 1086
Bst4CI	ACNGT	2 cut(s)	64, 299
BstACI	GRCGYC	1 cut(s)	471
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	3 cut(s)	168, 228, 1143
BstDEI	CTNAG	6 cut(s)	68, 565, 708, 806, 819, 968
BstDSI	CCRYGG	2 cut(s)	744, 1086
BstF5I	GGATG	2 cut(s)	99, 868
BstKTI	GATC	3 cut(s)	349, 613, 760
BstMAI	GTCTC	1 cut(s)	1109
BstMBI	GATC	3 cut(s)	346, 610, 757
BstMCI	CGRYCG	1 cut(s)	760
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 680, 1016
BstPAI	GACNNNNGTC	1 cut(s)	297
BstSCI	CCNGG	2 cut(s)	103, 1188
BstV1I	GCAGC	3 cut(s)	242, 250, 581
BstX2I	RGATCY	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	1093
BstYI	RGATCY	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	645
BsuI	GTATCC	1 cut(s)	1090
BsuRI	GGCC	1 cut(s)	659
BsuTUI	ATCGAT	1 cut(s)	645
BtgI	CCRYGG	2 cut(s)	744, 1086
BtsCI	GGATG	2 cut(s)	99, 868
BtsIMutI	CAGTG	1 cut(s)	531
BveI	ACCTGC	1 cut(s)	890
Cac8I	GCNNGC	3 cut(s)	168, 228, 1143
Cfr13I	GGNCC	2 cut(s)	368, 433
ClaI	ATCGAT	1 cut(s)	645
Csp6I	GTAC	2 cut(s)	561, 811
CviAII	CATG	3 cut(s)	730, 745, 1087
CviQI	GTAC	2 cut(s)	561, 811
DdeI	CTNAG	6 cut(s)	68, 565, 708, 806, 819, 968
DpnI	GATC	3 cut(s)	348, 612, 759
DpnII	GATC	3 cut(s)	346, 610, 757
DriI	GACNNNNNGTC	1 cut(s)	519
EaeI	YGGCCR	1 cut(s)	657
Eam1105I	GACNNNNNGTC	1 cut(s)	519
Eco130I	CCWWGG	3 cut(s)	744, 1023, 1086
Eco31I	GGTCTC	1 cut(s)	1109
Eco47I	GGWCC	2 cut(s)	368, 433
Eco57I	CTGAAG	3 cut(s)	17, 122, 990
EcoO109I	RGGNCCY	1 cut(s)	368
EcoT14I	CCWWGG	3 cut(s)	744, 1023, 1086
ErhI	CCWWGG	3 cut(s)	744, 1023, 1086
FaeI	CATG	3 cut(s)	733, 748, 1090
FalI	AAGNNNNNCTT	2 cut(s)	1016, 1048
FaqI	GGGAC	4 cut(s)	208, 263, 434, 796
FatI	CATG	3 cut(s)	729, 744, 1086
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	5 cut(s)	231, 264, 336, 570, 660
FokI	GGATG	2 cut(s)	86, 875
Fsp4HI	GCNGC	5 cut(s)	231, 264, 336, 570, 660
FspBI	CTAG	6 cut(s)	146, 227, 350, 989, 1001, 1043
GluI	GCNGC	5 cut(s)	231, 264, 336, 570, 660
GsuI	CTGGAG	1 cut(s)	1052
HaeIII	GGCC	1 cut(s)	659
HapII	CCGG	3 cut(s)	105, 671, 1189
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	3 cut(s)	733, 748, 1090
HincII	GTYRAC	1 cut(s)	916
HindII	GTYRAC	1 cut(s)	916
HinfI	GANTC	3 cut(s)	96, 128, 1193
HpaII	CCGG	3 cut(s)	105, 671, 1189
HphI	GGTGA	3 cut(s)	164, 523, 1194
Hpy166II	GTNNAC	1 cut(s)	916
Hpy188I	TCNGA	5 cut(s)	547, 955, 971, 1174, 1213
Hpy188III	TCNNGA	4 cut(s)	140, 475, 722, 1069
Hpy8I	GTNNAC	1 cut(s)	916
HpyAV	CCTTC	2 cut(s)	41, 817
HpyCH4III	ACNGT	2 cut(s)	64, 299
HpyCH4IV	ACGT	4 cut(s)	183, 450, 464, 471
HpyCH4V	TGCA	5 cut(s)	161, 170, 394, 555, 1160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 680, 1016
HpyF3I	CTNAG	6 cut(s)	68, 565, 708, 806, 819, 968
HpySE526I	ACGT	4 cut(s)	183, 450, 464, 471
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	3 cut(s)	733, 748, 1090
KpnI	GGTACC	1 cut(s)	564
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	346, 610, 757
LmnI	GCTCC	3 cut(s)	588, 1071, 1191
Lsp1109I	GCAGC	3 cut(s)	242, 250, 581
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	6 cut(s)	146, 227, 350, 989, 1001, 1043
MaeII	ACGT	4 cut(s)	183, 450, 464, 471
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	3 cut(s)	348, 612, 759
MboI	GATC	3 cut(s)	346, 610, 757
MboII	GAAGA	2 cut(s)	104, 167
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	6 cut(s)	87, 213, 306, 972, 1077, 1163
MlyI	GAGTC	1 cut(s)	1202
MmeI	TCCRAC	2 cut(s)	411, 485
MseI	TTAA	2 cut(s)	354, 738
MspA1I	CMGCKG	1 cut(s)	1010
MspI	CCGG	3 cut(s)	105, 671, 1189
MspR9I	CCNGG	2 cut(s)	105, 1190
Mva1269I	GAATGC	2 cut(s)	538, 890
MwoI	GCNNNNNNNGC	3 cut(s)	167, 680, 1016
NciI	CCSGG	2 cut(s)	105, 1190
NcoI	CCATGG	2 cut(s)	744, 1086
NdeII	GATC	3 cut(s)	346, 610, 757
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	733, 748, 1090
NlaIV	GGNNCC	4 cut(s)	370, 562, 624, 1132
NmuCI	GTSAC	1 cut(s)	511
PaqCI	CACCTGC	1 cut(s)	890
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PctI	GAATGC	2 cut(s)	538, 890
PfeI	GAWTC	2 cut(s)	96, 128
PflMI	CCANNNNNTGG	1 cut(s)	47
PfoI	TCCNGGA	1 cut(s)	1188
PkrI	GCNGC	5 cut(s)	232, 265, 337, 571, 661
Ple19I	CGATCG	1 cut(s)	760
PleI	GAGTC	1 cut(s)	1201
PpsI	GAGTC	1 cut(s)	1201
PpuMI	RGGWCCY	1 cut(s)	368
PshAI	GACNNNNGTC	1 cut(s)	297
Psp1406I	AACGTT	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	368
PspN4I	GGNNCC	4 cut(s)	370, 562, 624, 1132
PspPI	GGNCC	2 cut(s)	368, 433
PspPPI	RGGWCCY	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	346
PvuI	CGATCG	1 cut(s)	760
PvuII	CAGCTG	1 cut(s)	1010
RsaI	GTAC	2 cut(s)	562, 812
RsaNI	GTAC	2 cut(s)	561, 811
SaqAI	TTAA	2 cut(s)	354, 738
SatI	GCNGC	5 cut(s)	231, 264, 336, 570, 660
Sau3AI	GATC	3 cut(s)	346, 610, 757
Sau96I	GGNCC	2 cut(s)	368, 433
SchI	GAGTC	1 cut(s)	1202
ScrFI	CCNGG	2 cut(s)	105, 1190
SfaNI	GCATC	1 cut(s)	148
SinI	GGWCC	2 cut(s)	368, 433
Sse9I	AATT	6 cut(s)	87, 213, 306, 972, 1077, 1163
SsiI	CCGC	3 cut(s)	324, 336, 660
SspMI	CTAG	6 cut(s)	146, 227, 350, 989, 1001, 1043
StyD4I	CCNGG	2 cut(s)	103, 1188
StyI	CCWWGG	3 cut(s)	744, 1023, 1086
TaaI	ACNGT	2 cut(s)	64, 299
TaiI	ACGT	4 cut(s)	186, 453, 467, 474
TaqI	TCGA	1 cut(s)	645
TasI	AATT	6 cut(s)	87, 213, 306, 972, 1077, 1163
TauI	GCSGC	2 cut(s)	338, 662
TfiI	GAWTC	2 cut(s)	96, 128
Tru1I	TTAA	2 cut(s)	354, 738
Tru9I	TTAA	2 cut(s)	354, 738
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	3 cut(s)	230, 263, 569
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	2 cut(s)	718, 909
TspRI	CASTG	1 cut(s)	531
Van91I	CCANNNNNTGG	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	368, 433
XapI	RAATTY	1 cut(s)	306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1030
XspI	CTAG	6 cut(s)	146, 227, 350, 989, 1001, 1043
ZraI	GACGTC	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.