Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005216

Physical Location & Seq

Genomic Coordinates Forward (+)

8969433 .. 8972480

Gene Structure 3048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15780.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGCAAGTGCAAGCAGACCCTCACTCCTACAAGTTCAGCCTCCCAGATATGGGAATCTTATAACTGTTCTTAGTATAGACGGGGGAGGAATTAGGGGAATCATTCCTGGAGTTCTTCTCACTTACCTTGAATCTCAACTTCAGCATCTAGATGGTGAAGATGCAAGGATTGCAGACTACTTCGATGTGATTTCTGGGACCAGCACAGGTGGTCTGATTACGGCCATGTTAGCAGCACCCGACGAAAACAACCGGCCACTATTCGCGGCCAAAGATATTGTGCCTTTCTACCTTGATAACTGCCCTAAGATATTTCCACAATCAAGAGGATTGTGTGCCACAGTGACAGATCTAGTTAAAGTTCTAATAGGACCAAAGTATGATGGGAAGTATCTGCACAAGCTAATAAGAAGCATAGTAGGGGACAAAAGATTGAGCCAGACCTTGACAAACGTGATTATTCCGACTTTCGACATCAAGACACTTCTTCCTGTCATCTTTTCCACTTATCAGGTGGCAAGCTATCCAGTCAAGAACGCAAAACTTTCAGACATTTGCATCGGAACATCAGCAGCCCCTACTTACTTTCCTGCCCACTATTTTGAGAACCATCAACAAGGGGAAACCAATAAGTTTAACCTCATCGATGGTGGTGTGGCCGCCAATAATCCGGCTTTGGTTGCCATTACTGAAGTGACAAAACAAATCATGAGAAAGAATCCAGATTTCTCAGAGGTTCAGCCCTTGGAACTATACGAACGATTTCTACTGATCACGTTGGGGACGGGTTCAAACAAGAGTGAACTGAGATACAGTGCTAAGATGGCTTCCAAGTGGGGGATTCTGAGCTGGTTATACGATGATGGCTCTAGTCCTTTAGTGAATTCTTATAATGAAGCAAGTTCGGATATGGTTGCTTACCACAACTGTGCGATTTTCGAAGCCCTTCAATCTGAAAACAACTACCTCAGGATTGATGATGACACACTAACTGGAGATCTGTCTTCAGTGGATAAAGCTACAAAGGAGAACTTGGAAAATCTAGTGGAAGTTGGAGAGCAGTTGCTTAAGAAACAAGTTTCACGTATGAATCTGGATACAGGTCTTTATGAACCAGTTGAAAATGGTGGCACCAATGAAGAAGCACTTCAAAGGTTTGCAAAGGTACTTTCAGATGAAAAGAAATATAGGGAGTCGAAATCACCAAGGCCGAAGGCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0033993 GO:0042221 GO:0044424 GO:0044464 GO:0047372 GO:0050896 GO:0052689 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

408

Amino Acids

44.93

Weight (kDa)

5.56

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	32 - 138	3.3e-12	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37050 AT4G37060 AT4G37060 AT4G37070 AT4G37070 AT4G37070 AT4G37070
fragaria_vesca	FvH4_1g15780 FvH4_1g15780 FvH4_1g15780 FvH4_1g15780
malus_domestica	MD02G1169600.v1.1
prunus_persica	Prupe.7G135600_v2.0.a1 Prupe.7G135600_v2.0.a1
pyrus_communis	pycom02g13660
rosa_chinensis	RchiOBHm_Chr2g0105061
rosa_laevigata	RLG00000017398
rosa_multiflora	Rmu_sc0005160.1_g000011
rosa_roxburghii	Rroxscaffold_2G00138460
rosa_rugosa	Rorug02G0125900
rosa_samantha	Rh2AG176700 Rh2BG184600 Rh2CG181000 Rh2DG182800 Rh3CG284400 Rh5CG540900 Rh6DG471400 Rh6DG471600
rosa_wichuraiana	Rw2G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	62, 891
AccB1I	GGYRCC	1 cut(s)	1130
AccII	CGCG	1 cut(s)	266
AciI	CCGC	2 cut(s)	266, 660
AcoI	YGGCCR	4 cut(s)	222, 254, 267, 657
AcsI	RAATTY	1 cut(s)	883
AcuI	CTGAAG	3 cut(s)	125, 711, 990
AfaI	GTAC	1 cut(s)	1167
AfiI	CCNNNNNNNGG	3 cut(s)	50, 51, 837
AflII	CTTAAG	1 cut(s)	1067
AgsI	TTSAA	5 cut(s)	131, 792, 950, 1121, 1151
AjnI	CCWGG	1 cut(s)	106
AleI	CACNNNNGTG	1 cut(s)	927
AluBI	AGCT	4 cut(s)	403, 522, 849, 1019
AluI	AGCT	4 cut(s)	403, 522, 849, 1019
AoxI	GGCC	5 cut(s)	222, 254, 267, 657, 1208
ApeKI	GCWGC	2 cut(s)	233, 572
ApoI	RAATTY	1 cut(s)	883
Asp700I	GAANNNNTTC	3 cut(s)	762, 945, 1146
AspS9I	GGNCC	2 cut(s)	198, 371
AsuHPI	GGTGA	2 cut(s)	167, 1194
AsuII	TTCGAA	1 cut(s)	939
AvaII	GGWCC	2 cut(s)	198, 371
AxyI	CCTNAGG	1 cut(s)	968
BanI	GGYRCC	1 cut(s)	1130
BbsI	GAAGAC	1 cut(s)	996
BbvI	GCAGC	2 cut(s)	245, 584
BccI	CCATC	6 cut(s)	146, 377, 618, 641, 817, 857
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	108
BciVI	GTATCC	1 cut(s)	1090
BclI	TGATCA	1 cut(s)	771
BfaI	CTAG	4 cut(s)	149, 353, 870, 1043
BfrI	CTTAAG	1 cut(s)	1067
BfuI	GTATCC	1 cut(s)	1090
BglII	AGATCT	2 cut(s)	349, 997
BisI	GCNGC	4 cut(s)	234, 267, 573, 660
BlsI	GCNGC	4 cut(s)	235, 268, 574, 661
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	2 cut(s)	198, 371
BmgT120I	GGNCC	2 cut(s)	198, 371
BmiI	GGNNCC	2 cut(s)	199, 1132
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	3 cut(s)	151, 154, 567
BpiI	GAAGAC	1 cut(s)	996
BplI	GAGNNNNNCTC	2 cut(s)	102, 134
BpmI	CTGGAG	2 cut(s)	129, 1014
Bpu14I	TTCGAA	1 cut(s)	939
Bsa29I	ATCGAT	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	1085
BsaJI	CCNNGG	2 cut(s)	744, 1205
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 51, 837
Bse118I	RCCGGY	1 cut(s)	252
Bse1I	ACTGG	3 cut(s)	527, 997, 1115
Bse21I	CCTNAGG	1 cut(s)	968
BseBI	CCWGG	1 cut(s)	108
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	744, 1205
BseLI	CCNNNNNNNGG	3 cut(s)	50, 51, 837
BseMII	CTCAG	4 cut(s)	744, 797, 836, 982
BseNI	ACTGG	3 cut(s)	527, 997, 1115
BseXI	GCAGC	2 cut(s)	245, 584
BsgI	GTGCAG	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	5 cut(s)	224, 256, 269, 659, 1210
BshNI	GGYRCC	1 cut(s)	1130
BshVI	ATCGAT	1 cut(s)	645
BsiSI	CCGG	2 cut(s)	253, 671
BslFI	GGGAC	3 cut(s)	211, 437, 796
BslI	CCNNNNNNNGG	3 cut(s)	50, 51, 837
BsmFI	GGGAC	3 cut(s)	211, 437, 796
BsnI	GGCC	5 cut(s)	224, 256, 269, 659, 1210
Bsp119I	TTCGAA	1 cut(s)	939
Bsp143I	GATC	3 cut(s)	349, 771, 997
BspACI	CCGC	2 cut(s)	266, 660
BspANI	GGCC	5 cut(s)	224, 256, 269, 659, 1210
BspCNI	CTCAG	4 cut(s)	743, 798, 837, 981
BspDI	ATCGAT	1 cut(s)	645
BspFNI	CGCG	1 cut(s)	266
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	2 cut(s)	199, 1132
BspT104I	TTCGAA	1 cut(s)	939
BspT107I	GGYRCC	1 cut(s)	1130
BspTI	CTTAAG	1 cut(s)	1067
BsrFI	RCCGGY	1 cut(s)	252
BsrI	ACTGG	3 cut(s)	527, 997, 1115
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	744, 1205
BssMI	GATC	3 cut(s)	349, 771, 997
BssT1I	CCWWGG	2 cut(s)	744, 1205
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	4 cut(s)	67, 343, 815, 929
BstAFI	CTTAAG	1 cut(s)	1067
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	1085
BstBI	TTCGAA	1 cut(s)	939
BstC8I	GCNNGC	2 cut(s)	13, 520
BstDEI	CTNAG	7 cut(s)	71, 306, 730, 806, 819, 845, 968
BstFNI	CGCG	1 cut(s)	266
BstKTI	GATC	3 cut(s)	352, 774, 1000
BstMBI	GATC	3 cut(s)	349, 771, 997
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 230, 680, 824
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	2 cut(s)	245, 584
BstV2I	GAAGAC	1 cut(s)	996
BstX2I	RGATCY	2 cut(s)	349, 997
BstYI	RGATCY	2 cut(s)	349, 997
Bsu15I	ATCGAT	1 cut(s)	645
Bsu36I	CCTNAGG	1 cut(s)	968
BsuI	GTATCC	1 cut(s)	1090
BsuRI	GGCC	5 cut(s)	224, 256, 269, 659, 1210
BsuTUI	ATCGAT	1 cut(s)	645
BtsIMutI	CAGTG	3 cut(s)	348, 820, 1014
Cac8I	GCNNGC	2 cut(s)	13, 520
CciI	TCATGA	1 cut(s)	708
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	2 cut(s)	198, 371
ClaI	ATCGAT	1 cut(s)	645
Csp6I	GTAC	1 cut(s)	1166
CviAII	CATG	2 cut(s)	226, 709
CviQI	GTAC	1 cut(s)	1166
DdeI	CTNAG	7 cut(s)	71, 306, 730, 806, 819, 845, 968
DpnI	GATC	3 cut(s)	351, 773, 999
DpnII	GATC	3 cut(s)	349, 771, 997
EaeI	YGGCCR	4 cut(s)	222, 254, 267, 657
Eco130I	CCWWGG	2 cut(s)	744, 1205
Eco47I	GGWCC	2 cut(s)	198, 371
Eco57I	CTGAAG	3 cut(s)	125, 711, 990
Eco81I	CCTNAGG	1 cut(s)	968
EcoRI	GAATTC	1 cut(s)	883
EcoRII	CCWGG	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	744, 1205
ErhI	CCWWGG	2 cut(s)	744, 1205
FaeI	CATG	2 cut(s)	229, 712
FalI	AAGNNNNNCTT	4 cut(s)	1016, 1048, 1131, 1163
FaqI	GGGAC	3 cut(s)	211, 437, 796
FatI	CATG	2 cut(s)	225, 708
FbaI	TGATCA	1 cut(s)	771
Fnu4HI	GCNGC	4 cut(s)	234, 267, 573, 660
Fsp4HI	GCNGC	4 cut(s)	234, 267, 573, 660
FspBI	CTAG	4 cut(s)	149, 353, 870, 1043
GluI	GCNGC	4 cut(s)	234, 267, 573, 660
GsuI	CTGGAG	2 cut(s)	129, 1014
HaeIII	GGCC	5 cut(s)	224, 256, 269, 659, 1210
HapII	CCGG	2 cut(s)	253, 671
Hin1II	CATG	2 cut(s)	229, 712
HinfI	GANTC	7 cut(s)	55, 99, 131, 718, 841, 1090, 1193
HpaII	CCGG	2 cut(s)	253, 671
HphI	GGTGA	2 cut(s)	167, 1194
Hpy166II	GTNNAC	1 cut(s)	803
Hpy188I	TCNGA	9 cut(s)	216, 465, 550, 563, 733, 846, 907, 955, 1174
Hpy188III	TCNNGA	8 cut(s)	149, 324, 478, 532, 709, 722, 970, 1094
Hpy8I	GTNNAC	1 cut(s)	803
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	956, 1207
HpyCH4III	ACNGT	4 cut(s)	67, 343, 815, 929
HpyCH4IV	ACGT	3 cut(s)	453, 776, 1084
HpyCH4V	TGCA	6 cut(s)	11, 164, 173, 397, 558, 1160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 230, 680, 824
HpyF3I	CTNAG	7 cut(s)	71, 306, 730, 806, 819, 845, 968
HpySE526I	ACGT	3 cut(s)	453, 776, 1084
Hsp92II	CATG	2 cut(s)	229, 712
Ksp22I	TGATCA	1 cut(s)	771
Kzo9I	GATC	3 cut(s)	349, 771, 997
Lsp1109I	GCAGC	2 cut(s)	245, 584
LweI	GCATC	3 cut(s)	151, 154, 567
MaeI	CTAG	4 cut(s)	149, 353, 870, 1043
MaeII	ACGT	3 cut(s)	453, 776, 1084
MaeIII	GTNAC	2 cut(s)	343, 694
MalI	GATC	3 cut(s)	351, 773, 999
MboI	GATC	3 cut(s)	349, 771, 997
MboII	GAAGA	5 cut(s)	107, 170, 479, 996, 1151
MflI	RGATCY	2 cut(s)	349, 997
MluCI	AATT	2 cut(s)	90, 883
MlyI	GAGTC	1 cut(s)	1202
MmeI	TCCRAC	2 cut(s)	488, 1033
MnlI	CCTC	7 cut(s)	31, 51, 80, 320, 650, 727, 977
MroXI	GAANNNNTTC	3 cut(s)	762, 945, 1146
MseI	TTAA	3 cut(s)	357, 636, 1068
MslI	CAYNNNNRTG	2 cut(s)	150, 927
MspCI	CTTAAG	1 cut(s)	1067
MspI	CCGG	2 cut(s)	253, 671
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	4 cut(s)	170, 230, 680, 824
NdeII	GATC	3 cut(s)	349, 771, 997
NlaIII	CATG	2 cut(s)	229, 712
NlaIV	GGNNCC	2 cut(s)	199, 1132
NmuCI	GTSAC	2 cut(s)	343, 694
NspV	TTCGAA	1 cut(s)	939
OliI	CACNNNNGTG	1 cut(s)	927
PagI	TCATGA	1 cut(s)	708
PdmI	GAANNNNTTC	3 cut(s)	762, 945, 1146
PfeI	GAWTC	6 cut(s)	55, 99, 131, 718, 841, 1090
PfoI	TCCNGGA	1 cut(s)	106
PkrI	GCNGC	4 cut(s)	235, 268, 574, 661
PleI	GAGTC	1 cut(s)	1201
PpsI	GAGTC	1 cut(s)	1201
Ppu21I	YACGTR	1 cut(s)	1085
PsiI	TTATAA	2 cut(s)	62, 891
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	199, 1132
PspPI	GGNCC	2 cut(s)	198, 371
PsrI	GAACNNNNNNTAC	2 cut(s)	750, 782
PsuI	RGATCY	2 cut(s)	349, 997
RsaI	GTAC	1 cut(s)	1167
RsaNI	GTAC	1 cut(s)	1166
RseI	CAYNNNNRTG	2 cut(s)	150, 927
SaqAI	TTAA	3 cut(s)	357, 636, 1068
SatI	GCNGC	4 cut(s)	234, 267, 573, 660
Sau3AI	GATC	3 cut(s)	349, 771, 997
Sau96I	GGNCC	2 cut(s)	198, 371
SchI	GAGTC	1 cut(s)	1202
ScrFI	CCNGG	1 cut(s)	108
SfaNI	GCATC	3 cut(s)	151, 154, 567
SfuI	TTCGAA	1 cut(s)	939
SinI	GGWCC	2 cut(s)	198, 371
SmiMI	CAYNNNNRTG	2 cut(s)	150, 927
SmlI	CTYRAG	1 cut(s)	1067
SmoI	CTYRAG	1 cut(s)	1067
Sse9I	AATT	2 cut(s)	90, 883
SsiI	CCGC	2 cut(s)	266, 660
SspMI	CTAG	4 cut(s)	149, 353, 870, 1043
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	2 cut(s)	744, 1205
TaaI	ACNGT	4 cut(s)	67, 343, 815, 929
TaiI	ACGT	3 cut(s)	456, 779, 1087
TaqI	TCGA	5 cut(s)	183, 471, 645, 939, 1196
TasI	AATT	2 cut(s)	90, 883
TauI	GCSGC	2 cut(s)	269, 662
TfiI	GAWTC	6 cut(s)	55, 99, 131, 718, 841, 1090
Tru1I	TTAA	3 cut(s)	357, 636, 1068
Tru9I	TTAA	3 cut(s)	357, 636, 1068
TscAI	CASTG	3 cut(s)	348, 820, 1014
TseFI	GTSAC	2 cut(s)	343, 694
TseI	GCWGC	2 cut(s)	233, 572
Tsp45I	GTSAC	2 cut(s)	343, 694
TspDTI	ATGAA	5 cut(s)	909, 1103, 1125, 1152, 1191
TspRI	CASTG	3 cut(s)	348, 820, 1014
Vha464I	CTTAAG	1 cut(s)	1067
VpaK11BI	GGWCC	2 cut(s)	198, 371
XapI	RAATTY	1 cut(s)	883
XbaI	TCTAGA	1 cut(s)	148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmnI	GAANNNNTTC	3 cut(s)	762, 945, 1146
XspI	CTAG	4 cut(s)	149, 353, 870, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.